Wall clock time and date at job start Mon Mar 30 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38035 * 119.82666 * 2 1 4 4 C 1.38793 * 120.15488 * 180.23385 * 3 2 1 5 5 N 1.39321 * 120.09694 * 179.76381 * 4 3 2 6 6 C 1.46897 * 110.99671 * 63.34229 * 5 4 3 7 7 C 1.46898 * 111.00305 * 299.38793 * 5 4 3 8 8 H 1.08995 * 109.46900 * 62.80558 * 7 5 4 9 9 C 1.53002 * 109.47323 * 182.80822 * 7 5 4 10 10 C 1.50700 * 109.46726 * 302.80932 * 7 5 4 11 11 H 1.08001 * 120.00311 * 359.97438 * 10 7 5 12 12 C 1.37879 * 119.99805 * 179.72335 * 10 7 5 13 13 N 1.31516 * 120.00213 * 0.27636 * 12 10 7 14 14 Si 1.86798 * 120.00007 * 180.27232 * 12 10 7 15 15 H 1.48498 * 109.47361 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46936 * 120.00323 * 14 12 10 17 17 H 1.48504 * 109.47273 * 239.99816 * 14 12 10 18 18 C 1.40338 * 119.80564 * 359.48993 * 4 3 2 19 19 C 1.43202 * 120.17100 * 180.23419 * 18 4 3 20 20 N 4.81434 * 136.84456 * 359.97438 * 3 1 2 21 21 C 1.39698 * 119.65568 * 0.24903 * 18 4 3 22 22 C 1.38430 * 119.84067 * 0.02562 * 21 18 4 23 23 N 1.40020 * 119.90260 * 179.97438 * 22 21 18 24 24 H 1.08998 * 109.47057 * 270.27841 * 1 2 3 25 25 H 1.08991 * 109.46854 * 30.28010 * 1 2 3 26 26 H 1.09005 * 109.46893 * 150.27807 * 1 2 3 27 27 H 1.07996 * 119.91983 * 359.97254 * 3 2 1 28 28 H 1.09004 * 109.47303 * 296.04083 * 6 5 4 29 29 H 1.08996 * 109.47364 * 56.04816 * 6 5 4 30 30 H 1.09011 * 109.47261 * 176.04604 * 6 5 4 31 31 H 1.09002 * 109.46895 * 174.42284 * 9 7 5 32 32 H 1.08999 * 109.46828 * 294.42353 * 9 7 5 33 33 H 1.09000 * 109.46872 * 54.41983 * 9 7 5 34 34 H 0.97000 * 120.00275 * 180.02562 * 13 12 10 35 35 H 1.07999 * 120.08060 * 179.97438 * 21 18 4 36 36 H 0.97001 * 120.00223 * 0.02562 * 23 22 21 37 37 H 0.97001 * 119.99730 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.1975 0.0000 4 6 3.5814 1.2055 -0.0049 5 7 4.2732 2.4148 -0.0099 6 6 4.0047 3.1798 1.2151 7 6 3.9462 3.2035 -1.2053 8 1 2.8857 3.4550 -1.1957 9 6 4.7753 4.4893 -1.2105 10 6 4.2603 2.3981 -2.4397 11 1 4.6630 1.4004 -2.3456 12 6 4.0288 2.9331 -3.6892 13 7 3.5389 4.1482 -3.8039 14 14 4.4111 1.9320 -5.2192 15 1 4.9486 0.6060 -4.8218 16 1 3.1689 1.7448 -6.0114 17 1 5.4188 2.6491 -6.0411 18 6 4.2860 -0.0082 0.0010 19 6 5.7180 -0.0091 0.0011 20 7 6.8540 -0.0099 0.0015 21 6 3.5831 -1.2155 0.0065 22 6 2.1988 -1.2066 0.0055 23 7 1.4930 -2.4159 0.0104 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8874 -0.5181 26 1 -0.3633 -0.8925 -0.5095 27 1 1.6494 2.1304 -0.0004 28 1 2.9489 3.4485 1.2517 29 1 4.2554 2.5727 2.0849 30 1 4.6105 4.0860 1.2178 31 1 4.6070 5.0264 -2.1440 32 1 4.4770 5.1174 -0.3711 33 1 5.8326 4.2402 -1.1201 34 1 3.3757 4.5244 -4.6829 35 1 4.1184 -2.1535 0.0106 36 1 1.9740 -3.2582 0.0149 37 1 0.5230 -2.4112 0.0102 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721071235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:09 Heat of formation + Delta-G solvation = 44.341191 kcal Electronic energy + Delta-G solvation = -19532.860091 eV Core-core repulsion = 16695.450949 eV Total energy + Delta-G solvation = -2837.409142 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08462 -38.54136 -37.42298 -35.25543 -34.14846 -33.44788 -31.04681 -29.20281 -28.33530 -27.20574 -25.90996 -23.65463 -22.82316 -21.05963 -19.64132 -18.51619 -17.86915 -17.22262 -16.36858 -16.25989 -15.74290 -15.55740 -15.07447 -14.86018 -14.77194 -14.28235 -13.93886 -13.85257 -13.77466 -13.69693 -13.19930 -12.96540 -12.85415 -12.72899 -12.61718 -12.48743 -12.33743 -12.24799 -12.07381 -11.78140 -11.07498 -10.87421 -10.50874 -9.59459 -9.07581 -8.17835 -8.08503 -6.18343 -0.00034 0.67616 1.36099 1.39642 1.50387 1.87886 2.16858 2.41850 2.93374 3.08804 3.19204 3.25144 3.45033 4.00382 4.13169 4.40336 4.52010 4.61212 4.71757 4.78876 4.85144 4.91764 4.97832 4.99712 5.08902 5.11532 5.18092 5.20975 5.40462 5.51209 5.67822 5.74916 5.83590 5.86514 6.28817 6.50866 6.65368 6.69476 6.81171 6.99698 7.17283 7.49135 8.95630 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015269 B = 0.008367 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.337981 B = 3345.585938 C = 3609.749079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.121 4.121 3 C -0.112 4.112 4 C 0.116 3.884 5 N -0.528 5.528 6 C 0.033 3.967 7 C 0.227 3.773 8 H -0.014 1.014 9 C -0.126 4.126 10 C -0.503 4.503 11 H 0.046 0.954 12 C 0.019 3.981 13 N -0.915 5.915 14 Si 0.942 3.058 15 H -0.277 1.277 16 H -0.274 1.274 17 H -0.283 1.283 18 C -0.006 4.006 19 C 0.297 3.703 20 N -0.478 5.478 21 C -0.143 4.143 22 C 0.206 3.794 23 N -0.864 5.864 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.022 0.978 34 H 0.261 0.739 35 H 0.149 0.851 36 H 0.408 0.592 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.716 -10.753 9.262 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.132 4.132 4 C 0.017 3.983 5 N -0.250 5.250 6 C -0.114 4.114 7 C 0.122 3.878 8 H 0.004 0.996 9 C -0.184 4.184 10 C -0.542 4.542 11 H 0.064 0.936 12 C -0.179 4.179 13 N -0.555 5.555 14 Si 0.769 3.231 15 H -0.202 1.202 16 H -0.199 1.199 17 H -0.209 1.209 18 C -0.012 4.012 19 C -0.017 4.017 20 N -0.155 5.155 21 C -0.169 4.169 22 C 0.101 3.899 23 N -0.407 5.407 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.135 0.865 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.166 0.834 36 H 0.238 0.762 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -7.488 -10.679 9.112 15.910 hybrid contribution -0.804 0.047 -1.152 1.406 sum -8.293 -10.631 7.960 15.657 Atomic orbital electron populations 1.20723 0.88875 1.03358 1.03286 1.19709 0.97516 0.90839 1.04623 1.21226 0.93417 0.98280 1.00323 1.18485 0.90570 0.89904 0.99341 1.59565 1.57579 1.03953 1.03859 1.22393 0.99445 0.98300 0.91264 1.19094 0.92453 0.90362 0.85897 0.99625 1.21704 0.98012 0.97952 1.00720 1.21276 1.41299 1.00575 0.91015 0.93609 1.25473 0.95383 0.95900 1.01176 1.69973 1.45951 1.15601 1.23973 0.85743 0.77984 0.79021 0.80385 1.20176 1.19939 1.20922 1.15893 0.83422 0.94026 1.07810 1.25756 0.92915 0.91108 0.91954 1.81043 1.13305 1.10066 1.11089 1.20496 0.92691 0.96279 1.07429 1.17204 0.90029 0.87326 0.95366 1.42394 1.09304 1.03867 1.85118 0.89434 0.91913 0.90001 0.86457 0.95081 0.91090 0.91327 0.91646 0.94666 0.95880 0.92957 0.83366 0.76228 0.76039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 9.56 71.24 0.68 -1.30 16 2 C -0.12 -3.23 5.90 -19.71 -0.12 -3.34 16 3 C -0.11 -3.81 8.26 22.35 0.18 -3.63 16 4 C 0.12 4.53 3.51 38.60 0.14 4.66 16 5 N -0.53 -22.78 3.98 -699.25 -2.78 -25.57 16 6 C 0.03 1.15 8.90 127.69 1.14 2.29 16 7 C 0.23 11.38 1.79 44.17 0.08 11.46 16 8 H -0.01 -0.73 7.24 -2.39 -0.02 -0.75 16 9 C -0.13 -6.21 8.59 71.98 0.62 -5.59 16 10 C -0.50 -27.94 8.05 25.60 0.21 -27.74 16 11 H 0.05 2.65 6.99 -2.91 -0.02 2.63 16 12 C 0.02 1.08 5.29 84.65 0.45 1.53 16 13 N -0.91 -52.11 11.30 21.45 0.24 -51.87 16 14 Si 0.94 44.95 29.54 68.60 2.03 46.97 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 16 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 18 C -0.01 -0.24 5.39 -21.17 -0.11 -0.35 16 19 C 0.30 12.23 14.80 88.33 1.31 13.54 16 20 N -0.48 -21.20 18.54 19.00 0.35 -20.85 16 21 C -0.14 -4.02 9.60 22.67 0.22 -3.81 16 22 C 0.21 4.97 6.73 38.08 0.26 5.23 16 23 N -0.86 -12.78 9.00 -51.34 -0.46 -13.24 16 24 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.30 8.08 -2.39 -0.02 1.28 16 26 H 0.08 1.16 6.52 -2.38 -0.02 1.14 16 27 H 0.12 4.10 7.05 -2.91 -0.02 4.08 16 28 H 0.03 1.02 7.43 -2.38 -0.02 1.00 16 29 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 30 H 0.07 2.39 6.41 -2.38 -0.02 2.37 16 31 H 0.06 3.56 5.95 -2.39 -0.01 3.54 16 32 H 0.03 1.50 6.70 -2.39 -0.02 1.49 16 33 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 35 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.41 4.40 8.84 -92.71 -0.82 3.58 16 37 H 0.41 4.37 6.80 -92.71 -0.63 3.74 16 Total: -1.00 -67.34 308.82 4.08 -63.26 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -0.34 Total: 8.35 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 5.04 Total: -7.06 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -2.65 Total: -111.52 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.34 4.08 -63.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721071235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.604 kcal (2) G-P(sol) polarization free energy of solvation -67.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds