Wall clock time and date at job start Mon Mar 30 2020 06:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38034 * 119.82400 * 2 1 4 4 C 1.38789 * 120.15344 * 180.27786 * 3 2 1 5 5 N 1.39320 * 120.09960 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99907 * 296.35249 * 5 4 3 7 7 C 1.46905 * 110.99688 * 60.30205 * 5 4 3 8 8 H 1.09005 * 109.47262 * 295.56889 * 7 5 4 9 9 C 1.53004 * 109.46857 * 175.57254 * 7 5 4 10 10 C 1.50692 * 109.47368 * 55.57177 * 7 5 4 11 11 H 1.08005 * 119.99904 * 0.02562 * 10 7 5 12 12 C 1.37877 * 120.00103 * 179.97438 * 10 7 5 13 13 N 1.31508 * 120.00208 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 120.00027 * 179.97438 * 12 10 7 15 15 H 1.48499 * 109.46964 * 59.99970 * 14 12 10 16 16 H 1.48501 * 109.47212 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47214 * 300.00051 * 14 12 10 18 18 C 1.40336 * 119.80346 * 359.97438 * 4 3 2 19 19 C 1.43207 * 120.16880 * 180.02562 * 18 4 3 20 20 N 4.81426 * 136.84293 * 0.35244 * 3 1 2 21 21 C 1.39698 * 119.65879 * 0.02562 * 18 4 3 22 22 C 1.38426 * 119.84247 * 0.02562 * 21 18 4 23 23 N 1.40009 * 119.90612 * 179.97438 * 22 21 18 24 24 H 1.08993 * 109.47034 * 269.72212 * 1 2 3 25 25 H 1.09004 * 109.46989 * 29.72700 * 1 2 3 26 26 H 1.09006 * 109.46761 * 149.72118 * 1 2 3 27 27 H 1.08002 * 119.92126 * 0.28383 * 3 2 1 28 28 H 1.09000 * 109.47664 * 59.99590 * 6 5 4 29 29 H 1.09000 * 109.46809 * 180.02562 * 6 5 4 30 30 H 1.09007 * 109.46651 * 299.99344 * 6 5 4 31 31 H 1.09001 * 109.47063 * 65.97517 * 9 7 5 32 32 H 1.08995 * 109.46757 * 185.97533 * 9 7 5 33 33 H 1.09003 * 109.47103 * 305.97721 * 9 7 5 34 34 H 0.97002 * 120.00423 * 179.97438 * 13 12 10 35 35 H 1.08002 * 120.07610 * 180.02562 * 21 18 4 36 36 H 0.96998 * 120.00723 * 179.97438 * 23 22 21 37 37 H 0.97004 * 119.99731 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1936 1.1975 0.0000 4 6 3.5814 1.2055 -0.0058 5 7 4.2732 2.4148 -0.0064 6 6 4.0009 3.1765 -1.2327 7 6 3.9497 3.2068 1.1879 8 1 2.8954 3.4828 1.1664 9 6 4.8081 4.4732 1.2079 10 6 4.2301 2.3904 2.4231 11 1 4.6109 1.3840 2.3304 12 6 4.0015 2.9286 3.6718 13 7 3.5392 4.1546 3.7848 14 14 4.3483 1.9163 5.2030 15 1 5.7844 1.5393 5.2322 16 1 4.0215 2.7170 6.4102 17 1 3.5143 0.6878 5.1836 18 6 4.2859 -0.0082 -0.0112 19 6 5.7180 -0.0091 -0.0166 20 7 6.8539 -0.0099 -0.0203 21 6 3.5830 -1.2155 -0.0111 22 6 2.1988 -1.2066 -0.0064 23 7 1.4930 -2.4158 -0.0069 24 1 -0.3633 -0.0050 1.0276 25 1 -0.3633 0.8925 -0.5096 26 1 -0.3633 -0.8875 -0.5182 27 1 1.6494 2.1304 0.0046 28 1 2.9332 3.3845 -1.3018 29 1 4.5536 4.1156 -1.2072 30 1 4.3145 2.5941 -2.0991 31 1 4.5297 5.1140 0.3712 32 1 4.6461 5.0071 2.1442 33 1 5.8600 4.2006 1.1223 34 1 3.3780 4.5331 4.6633 35 1 4.1184 -2.1535 -0.0148 36 1 0.5230 -2.4113 -0.0031 37 1 1.9741 -3.2582 -0.0109 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721071240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:12 Heat of formation + Delta-G solvation = 64.095179 kcal Electronic energy + Delta-G solvation = -19539.580503 eV Core-core repulsion = 16703.027958 eV Total energy + Delta-G solvation = -2836.552544 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76381 -37.11027 -35.84375 -33.67317 -32.51643 -32.28732 -29.26718 -27.83290 -27.16947 -25.42613 -24.20890 -22.42417 -21.31022 -19.39601 -18.37913 -17.03699 -16.36954 -15.46121 -15.08496 -14.71295 -14.34856 -14.03794 -13.71198 -13.49495 -13.14927 -12.88332 -12.65318 -12.40360 -12.22248 -11.90032 -11.78680 -11.74083 -11.64199 -11.08361 -10.94558 -10.70646 -10.64200 -10.44174 -10.24492 -9.94055 -9.73707 -8.94795 -8.42979 -8.32836 -7.44138 -7.05004 -6.00642 -4.04212 1.31645 1.95255 3.34733 3.37760 3.43150 3.44020 3.58194 4.00321 4.42429 4.44354 4.66421 4.83315 5.10592 5.25880 5.32341 5.48647 5.75352 5.81176 5.89523 5.94340 6.06449 6.17613 6.25137 6.40284 6.41285 6.56341 6.79221 6.89690 7.00337 7.06730 7.13213 7.41629 7.61428 7.76843 7.82684 7.90176 8.22167 8.26134 8.31873 8.54181 9.01193 9.60559 11.05702 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.008436 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.997950 B = 3318.273308 C = 3602.876426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.124 4.124 3 C -0.098 4.098 4 C 0.148 3.852 5 N -0.515 5.515 6 C 0.030 3.970 7 C 0.219 3.781 8 H 0.007 0.993 9 C -0.136 4.136 10 C -0.498 4.498 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.016 3.984 19 C 0.286 3.714 20 N -0.440 5.440 21 C -0.147 4.147 22 C 0.193 3.807 23 N -0.884 5.884 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.126 0.874 28 H 0.021 0.979 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.010 0.990 32 H 0.090 0.910 33 H 0.033 0.967 34 H 0.261 0.739 35 H 0.124 0.876 36 H 0.395 0.605 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.934 -8.680 -8.683 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.130 4.130 3 C -0.119 4.119 4 C 0.049 3.951 5 N -0.237 5.237 6 C -0.117 4.117 7 C 0.115 3.885 8 H 0.025 0.975 9 C -0.194 4.194 10 C -0.537 4.537 11 H 0.078 0.922 12 C -0.138 4.138 13 N -0.533 5.533 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.011 3.989 19 C -0.029 4.029 20 N -0.116 5.116 21 C -0.173 4.173 22 C 0.091 3.909 23 N -0.426 5.426 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.144 0.856 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.142 0.858 36 H 0.224 0.776 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.680 -8.551 -8.524 13.343 hybrid contribution -1.253 -0.523 1.069 1.728 sum -6.933 -9.074 -7.454 13.637 Atomic orbital electron populations 1.20636 0.91597 1.01961 1.02108 1.19352 0.95568 0.91556 1.06508 1.21248 0.94215 0.97295 0.99148 1.18379 0.89623 0.90524 0.96618 1.59738 1.56606 1.03289 1.04061 1.22369 0.98705 0.98582 0.92012 1.19374 0.93872 0.90311 0.84962 0.97533 1.21869 0.98758 0.97646 1.01097 1.21049 1.42904 1.00039 0.89696 0.92152 1.24840 0.95174 0.94974 0.98844 1.69856 1.45594 1.14075 1.23746 0.86655 0.78979 0.80189 0.82285 1.20233 1.21318 1.20193 1.15709 0.84385 0.92949 1.05831 1.25306 0.92388 0.92131 0.93051 1.81059 1.12283 1.08892 1.09374 1.20255 0.91909 0.96569 1.08525 1.17171 0.90383 0.86153 0.97195 1.42432 1.08570 1.04730 1.86905 0.91327 0.91506 0.92432 0.85636 0.96039 0.91062 0.92809 0.97142 0.89120 0.94744 0.92928 0.85788 0.77576 0.77820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.55 36.01 0.34 -0.84 16 2 C -0.12 -1.82 5.90 -104.38 -0.62 -2.44 16 3 C -0.10 -1.72 8.23 -39.45 -0.32 -2.04 16 4 C 0.15 2.89 3.46 -83.46 -0.29 2.60 16 5 N -0.51 -10.98 3.98 -172.36 -0.69 -11.67 16 6 C 0.03 0.54 9.10 60.07 0.55 1.09 16 7 C 0.22 5.37 1.76 -68.86 -0.12 5.25 16 8 H 0.01 0.18 7.29 -51.93 -0.38 -0.19 16 9 C -0.14 -3.29 8.64 37.16 0.32 -2.97 16 10 C -0.50 -13.57 8.04 -34.44 -0.28 -13.85 16 11 H 0.06 1.70 6.90 -52.48 -0.36 1.34 16 12 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 13 N -0.89 -25.10 11.29 55.43 0.63 -24.47 16 14 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.02 0.30 5.35 -106.63 -0.57 -0.27 16 19 C 0.29 5.85 14.80 -22.47 -0.33 5.51 16 20 N -0.44 -9.59 18.54 41.84 0.78 -8.82 16 21 C -0.15 -2.23 9.60 -38.97 -0.37 -2.60 16 22 C 0.19 2.66 6.73 -83.74 -0.56 2.09 16 23 N -0.88 -8.58 9.00 32.42 0.29 -8.29 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 26 H 0.06 0.50 6.53 -51.93 -0.34 0.16 16 27 H 0.13 2.19 7.04 -52.49 -0.37 1.82 16 28 H 0.02 0.35 7.31 -51.93 -0.38 -0.03 16 29 H 0.07 1.25 6.25 -51.93 -0.32 0.92 16 30 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.01 0.21 6.66 -51.93 -0.35 -0.14 16 32 H 0.09 2.41 5.93 -51.93 -0.31 2.10 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.40 3.14 6.80 -40.82 -0.28 2.86 16 37 H 0.39 3.06 8.84 -40.82 -0.36 2.70 16 LS Contribution 308.51 15.07 4.65 4.65 Total: -1.00 -30.59 308.51 -6.40 -36.99 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.69 Total: 1.67 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.35 Total: -6.82 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 1.01 Total: -53.24 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.59 -6.40 -36.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721071240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.089 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds