Wall clock time and date at job start Mon Mar 30 2020 06:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38034 * 119.82400 * 2 1 4 4 C 1.38789 * 120.15344 * 180.27786 * 3 2 1 5 5 N 1.39320 * 120.09960 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99907 * 296.35249 * 5 4 3 7 7 C 1.46905 * 110.99688 * 60.30205 * 5 4 3 8 8 H 1.09005 * 109.47262 * 295.56889 * 7 5 4 9 9 C 1.53004 * 109.46857 * 175.57254 * 7 5 4 10 10 C 1.50692 * 109.47368 * 55.57177 * 7 5 4 11 11 H 1.08005 * 119.99904 * 0.02562 * 10 7 5 12 12 C 1.37877 * 120.00103 * 179.97438 * 10 7 5 13 13 N 1.31508 * 120.00208 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 120.00027 * 179.97438 * 12 10 7 15 15 H 1.48499 * 109.46964 * 59.99970 * 14 12 10 16 16 H 1.48501 * 109.47212 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47214 * 300.00051 * 14 12 10 18 18 C 1.40336 * 119.80346 * 359.97438 * 4 3 2 19 19 C 1.43207 * 120.16880 * 180.02562 * 18 4 3 20 20 N 4.81426 * 136.84293 * 0.35244 * 3 1 2 21 21 C 1.39698 * 119.65879 * 0.02562 * 18 4 3 22 22 C 1.38426 * 119.84247 * 0.02562 * 21 18 4 23 23 N 1.40009 * 119.90612 * 179.97438 * 22 21 18 24 24 H 1.08993 * 109.47034 * 269.72212 * 1 2 3 25 25 H 1.09004 * 109.46989 * 29.72700 * 1 2 3 26 26 H 1.09006 * 109.46761 * 149.72118 * 1 2 3 27 27 H 1.08002 * 119.92126 * 0.28383 * 3 2 1 28 28 H 1.09000 * 109.47664 * 59.99590 * 6 5 4 29 29 H 1.09000 * 109.46809 * 180.02562 * 6 5 4 30 30 H 1.09007 * 109.46651 * 299.99344 * 6 5 4 31 31 H 1.09001 * 109.47063 * 65.97517 * 9 7 5 32 32 H 1.08995 * 109.46757 * 185.97533 * 9 7 5 33 33 H 1.09003 * 109.47103 * 305.97721 * 9 7 5 34 34 H 0.97002 * 120.00423 * 179.97438 * 13 12 10 35 35 H 1.08002 * 120.07610 * 180.02562 * 21 18 4 36 36 H 0.96998 * 120.00723 * 179.97438 * 23 22 21 37 37 H 0.97004 * 119.99731 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1936 1.1975 0.0000 4 6 3.5814 1.2055 -0.0058 5 7 4.2732 2.4148 -0.0064 6 6 4.0009 3.1765 -1.2327 7 6 3.9497 3.2068 1.1879 8 1 2.8954 3.4828 1.1664 9 6 4.8081 4.4732 1.2079 10 6 4.2301 2.3904 2.4231 11 1 4.6109 1.3840 2.3304 12 6 4.0015 2.9286 3.6718 13 7 3.5392 4.1546 3.7848 14 14 4.3483 1.9163 5.2030 15 1 5.7844 1.5393 5.2322 16 1 4.0215 2.7170 6.4102 17 1 3.5143 0.6878 5.1836 18 6 4.2859 -0.0082 -0.0112 19 6 5.7180 -0.0091 -0.0166 20 7 6.8539 -0.0099 -0.0203 21 6 3.5830 -1.2155 -0.0111 22 6 2.1988 -1.2066 -0.0064 23 7 1.4930 -2.4158 -0.0069 24 1 -0.3633 -0.0050 1.0276 25 1 -0.3633 0.8925 -0.5096 26 1 -0.3633 -0.8875 -0.5182 27 1 1.6494 2.1304 0.0046 28 1 2.9332 3.3845 -1.3018 29 1 4.5536 4.1156 -1.2072 30 1 4.3145 2.5941 -2.0991 31 1 4.5297 5.1140 0.3712 32 1 4.6461 5.0071 2.1442 33 1 5.8600 4.2006 1.1223 34 1 3.3780 4.5331 4.6633 35 1 4.1184 -2.1535 -0.0148 36 1 0.5230 -2.4113 -0.0031 37 1 1.9741 -3.2582 -0.0109 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721071240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:11 Heat of formation + Delta-G solvation = 44.719900 kcal Electronic energy + Delta-G solvation = -19540.420678 eV Core-core repulsion = 16703.027958 eV Total energy + Delta-G solvation = -2837.392720 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08575 -38.53884 -37.42392 -35.25213 -34.14872 -33.44703 -31.04750 -29.20773 -28.33251 -27.19895 -25.90583 -23.65447 -22.82314 -21.05971 -19.64190 -18.50600 -17.87383 -17.21584 -16.36240 -16.25840 -15.73207 -15.57819 -15.04206 -14.86545 -14.79318 -14.28909 -13.93007 -13.85509 -13.76785 -13.70006 -13.18823 -12.95489 -12.83209 -12.75788 -12.64301 -12.47717 -12.33638 -12.23552 -12.07323 -11.76922 -11.08255 -10.87404 -10.50197 -9.59442 -9.07655 -8.17571 -8.08009 -6.18025 0.00099 0.67992 1.38620 1.40793 1.47669 1.88061 2.16945 2.42127 2.92025 3.10604 3.19858 3.25481 3.44623 4.00477 4.13458 4.40524 4.52461 4.60607 4.72342 4.78941 4.85076 4.90575 4.97342 4.99756 5.09677 5.12347 5.18283 5.21232 5.40694 5.51255 5.67827 5.74825 5.84015 5.86612 6.28844 6.50571 6.65464 6.69528 6.80962 6.99824 7.17158 7.49300 8.95809 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.008436 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.997950 B = 3318.273308 C = 3602.876426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.117 3.883 5 N -0.528 5.528 6 C 0.032 3.968 7 C 0.227 3.773 8 H -0.014 1.014 9 C -0.126 4.126 10 C -0.505 4.505 11 H 0.046 0.954 12 C 0.020 3.980 13 N -0.915 5.915 14 Si 0.941 3.059 15 H -0.284 1.284 16 H -0.280 1.280 17 H -0.269 1.269 18 C -0.006 4.006 19 C 0.297 3.703 20 N -0.479 5.479 21 C -0.143 4.143 22 C 0.206 3.794 23 N -0.864 5.864 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.021 0.979 34 H 0.261 0.739 35 H 0.149 0.851 36 H 0.408 0.592 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 -10.766 -9.132 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.132 4.132 4 C 0.018 3.982 5 N -0.250 5.250 6 C -0.115 4.115 7 C 0.122 3.878 8 H 0.003 0.997 9 C -0.184 4.184 10 C -0.544 4.544 11 H 0.065 0.935 12 C -0.179 4.179 13 N -0.555 5.555 14 Si 0.768 3.232 15 H -0.210 1.210 16 H -0.205 1.205 17 H -0.194 1.194 18 C -0.012 4.012 19 C -0.017 4.017 20 N -0.155 5.155 21 C -0.169 4.169 22 C 0.101 3.899 23 N -0.407 5.407 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.167 0.833 36 H 0.239 0.761 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -7.475 -10.683 -8.987 15.836 hybrid contribution -0.805 0.033 1.141 1.397 sum -8.281 -10.650 -7.847 15.606 Atomic orbital electron populations 1.20723 0.88906 1.03853 1.02765 1.19710 0.97505 0.90864 1.04661 1.21222 0.93447 0.98255 1.00247 1.18477 0.90558 0.89897 0.99299 1.59575 1.57564 1.03961 1.03859 1.22406 0.99406 0.98415 0.91269 1.19080 0.92404 0.90362 0.85907 0.99660 1.21707 0.97957 0.97968 1.00765 1.21223 1.42432 0.99686 0.91043 0.93541 1.25468 0.95329 0.95899 1.01169 1.69956 1.46352 1.14998 1.24162 0.85866 0.78293 0.79314 0.79758 1.20982 1.20502 1.19373 1.15888 0.83418 0.94009 1.07840 1.25749 0.92898 0.91101 0.91959 1.81044 1.13302 1.10073 1.11090 1.20494 0.92667 0.96293 1.07445 1.17206 0.90058 0.87318 0.95368 1.42388 1.09299 1.03875 1.85124 0.91089 0.90969 0.89353 0.86466 0.94997 0.91291 0.91144 0.94702 0.91594 0.95941 0.92936 0.83335 0.76059 0.76220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 9.55 71.24 0.68 -1.32 16 2 C -0.12 -3.26 5.90 -19.71 -0.12 -3.38 16 3 C -0.11 -3.80 8.23 22.35 0.18 -3.61 16 4 C 0.12 4.55 3.46 38.59 0.13 4.69 16 5 N -0.53 -22.77 3.98 -699.24 -2.78 -25.56 16 6 C 0.03 1.12 9.10 127.69 1.16 2.28 16 7 C 0.23 11.40 1.76 44.17 0.08 11.48 16 8 H -0.01 -0.75 7.29 -2.38 -0.02 -0.77 16 9 C -0.13 -6.23 8.64 71.98 0.62 -5.60 16 10 C -0.51 -27.98 8.04 25.60 0.21 -27.78 16 11 H 0.05 2.66 6.90 -2.91 -0.02 2.64 16 12 C 0.02 1.12 5.29 84.66 0.45 1.57 16 13 N -0.91 -52.09 11.29 21.45 0.24 -51.85 16 14 Si 0.94 44.78 29.54 68.60 2.03 46.80 16 15 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 C -0.01 -0.24 5.35 -21.17 -0.11 -0.35 16 19 C 0.30 12.19 14.80 88.33 1.31 13.50 16 20 N -0.48 -21.14 18.54 19.01 0.35 -20.79 16 21 C -0.14 -4.02 9.60 22.67 0.22 -3.80 16 22 C 0.21 4.98 6.73 38.08 0.26 5.24 16 23 N -0.86 -12.87 9.00 -51.35 -0.46 -13.33 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 26 H 0.09 1.11 6.53 -2.38 -0.02 1.10 16 27 H 0.12 4.11 7.04 -2.91 -0.02 4.09 16 28 H 0.03 1.04 7.31 -2.39 -0.02 1.02 16 29 H 0.07 2.40 6.25 -2.39 -0.01 2.39 16 30 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.03 1.49 6.66 -2.39 -0.02 1.48 16 32 H 0.07 3.59 5.93 -2.39 -0.01 3.58 16 33 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.41 4.42 6.80 -92.71 -0.63 3.79 16 37 H 0.41 4.42 8.84 -92.71 -0.82 3.60 16 Total: -1.00 -67.08 308.51 4.11 -62.97 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -0.34 Total: 8.84 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 5.06 Total: -7.09 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -2.65 Total: -111.52 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -67.08 4.11 -62.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721071240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.691 kcal (2) G-P(sol) polarization free energy of solvation -67.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds