Wall clock time and date at job start Mon Mar 30 2020 07:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 112.85260 * 2 1 4 4 C 1.53787 * 113.61325 * 131.19939 * 2 1 3 5 5 C 1.53784 * 87.07802 * 139.98179 * 4 2 1 6 6 C 1.53010 * 113.61200 * 219.93166 * 5 4 2 7 7 N 1.46496 * 109.46940 * 183.47137 * 6 5 4 8 8 C 1.38858 * 119.99739 * 179.97438 * 7 6 5 9 9 C 1.39561 * 119.84338 * 359.73400 * 8 7 6 10 10 C 1.36337 * 120.16097 * 179.71684 * 9 8 7 11 11 C 1.40889 * 119.83667 * 0.55084 * 10 9 8 12 12 C 1.41141 * 120.15402 * 179.70176 * 11 10 9 13 13 H 1.08000 * 119.99488 * 204.62208 * 12 11 10 14 14 C 1.39863 * 120.00152 * 24.62319 * 12 11 10 15 15 N 1.30902 * 120.00427 * 17.96223 * 14 12 11 16 16 Si 1.86801 * 119.99898 * 197.96676 * 14 12 11 17 17 H 1.48505 * 109.47015 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47317 * 119.99496 * 16 14 12 19 19 H 1.48495 * 109.47308 * 240.00019 * 16 14 12 20 20 C 1.40881 * 119.68607 * 359.71602 * 11 10 9 21 21 C 1.36331 * 119.83779 * 0.02562 * 20 11 10 22 22 C 1.53782 * 87.08356 * 334.56683 * 5 4 2 23 23 H 1.08992 * 109.46984 * 288.80158 * 1 2 3 24 24 H 1.09003 * 109.47293 * 48.80226 * 1 2 3 25 25 H 1.08996 * 109.47021 * 168.80090 * 1 2 3 26 26 H 1.08997 * 109.47049 * 191.19247 * 3 2 1 27 27 H 1.08993 * 109.47220 * 311.20334 * 3 2 1 28 28 H 1.09009 * 109.46565 * 71.19743 * 3 2 1 29 29 H 1.08997 * 113.61594 * 25.43472 * 4 2 1 30 30 H 1.08998 * 113.61234 * 254.52298 * 4 2 1 31 31 H 1.09002 * 113.61746 * 89.11800 * 5 4 2 32 32 H 1.08998 * 109.46726 * 303.47375 * 6 5 4 33 33 H 1.08995 * 109.46715 * 63.47374 * 6 5 4 34 34 H 0.97006 * 120.00355 * 0.02562 * 7 6 5 35 35 H 1.08005 * 119.92085 * 359.97190 * 9 8 7 36 36 H 1.08005 * 120.08040 * 180.27269 * 10 9 8 37 37 H 0.96995 * 120.00490 * 180.02562 * 15 14 12 38 38 H 1.08004 * 120.07705 * 179.97438 * 20 11 10 39 39 H 1.08011 * 119.91859 * 179.97438 * 21 20 11 40 40 H 1.08996 * 113.61136 * 139.98642 * 22 5 4 41 41 H 1.09000 * 113.61167 * 270.88465 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0602 5 6 3.1923 -1.3136 0.0012 6 6 3.5476 -2.8019 0.0039 7 7 4.6059 -3.0530 -0.9774 8 6 5.0969 -4.3397 -1.1550 9 6 4.5836 -5.3902 -0.3929 10 6 5.0569 -6.6570 -0.5661 11 6 6.0747 -6.9024 -1.5088 12 6 6.5740 -8.2102 -1.6890 13 1 7.5701 -8.3588 -2.0790 14 6 5.7788 -9.3135 -1.3626 15 7 4.4842 -9.1712 -1.2309 16 14 6.5642 -10.9901 -1.1146 17 1 8.0312 -10.8847 -1.3193 18 1 6.2895 -11.4662 0.2650 19 1 5.9963 -11.9524 -2.0926 20 6 6.5920 -5.8360 -2.2705 21 6 6.1055 -4.5753 -2.0905 22 6 2.1460 -0.9300 -1.0585 23 1 -0.3633 0.3312 0.9728 24 1 -0.3634 0.6769 -0.7733 25 1 -0.3633 -1.0081 -0.1996 26 1 3.1942 1.3532 -0.1995 27 1 1.6415 2.0076 -0.7731 28 1 1.9600 1.8733 0.9729 29 1 1.4945 -1.7524 1.3506 30 1 2.5651 -0.3971 1.9149 31 1 4.0711 -0.6687 0.0006 32 1 3.8957 -3.0904 0.9957 33 1 2.6651 -3.3865 -0.2558 34 1 4.9643 -2.3204 -1.5026 35 1 3.8067 -5.1999 0.3328 36 1 4.6556 -7.4698 0.0213 37 1 3.9328 -9.9363 -1.0042 38 1 7.3726 -6.0169 -2.9947 39 1 6.5014 -3.7567 -2.6735 40 1 2.5650 -0.4007 -1.9142 41 1 1.4945 -1.7548 -1.3474 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723589478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:35 Heat of formation + Delta-G solvation = 23.652742 kcal Electronic energy + Delta-G solvation = -18584.014026 eV Core-core repulsion = 15849.248109 eV Total energy + Delta-G solvation = -2734.765917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.92224 -37.79132 -34.96401 -33.03656 -31.06646 -29.41203 -28.59038 -27.61762 -25.96402 -25.74869 -23.74951 -21.54141 -20.39623 -19.74984 -18.34061 -17.16454 -16.07950 -15.59212 -14.95379 -14.85812 -14.38813 -14.06074 -13.79155 -13.68205 -12.96460 -12.85135 -12.63746 -12.50057 -12.14480 -11.97225 -11.84032 -11.71342 -11.42984 -11.23620 -11.06466 -10.95823 -10.65643 -10.55717 -10.40562 -10.11608 -9.96460 -9.64692 -9.24396 -9.16934 -8.46481 -7.44897 -6.60299 -6.33025 -3.98969 2.93749 3.14191 3.17722 3.23158 3.39000 4.08531 4.23084 4.40768 4.57336 4.59841 4.80765 4.91205 5.06799 5.33871 5.42881 5.44513 5.57825 5.64096 5.70168 5.75673 5.78136 5.83647 5.86402 5.95993 6.00384 6.15366 6.17604 6.32087 6.35829 6.39319 6.52567 6.98297 6.99699 7.24645 7.40161 7.60808 7.73665 7.89391 8.19705 8.34443 8.55186 8.76733 8.85832 9.10249 9.19999 10.41313 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.044029 B = 0.003473 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.797931 B = 8059.669313 C = 8441.290390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 C -0.127 4.127 4 C -0.123 4.123 5 C -0.119 4.119 6 C 0.150 3.850 7 N -0.761 5.761 8 C 0.094 3.906 9 C -0.165 4.165 10 C -0.124 4.124 11 C 0.073 3.927 12 C -0.467 4.467 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.808 5.808 16 Si 0.902 3.098 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.277 1.277 20 C -0.186 4.186 21 C -0.161 4.161 22 C -0.124 4.124 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.383 0.617 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.275 0.725 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 15.006 3.472 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 C -0.184 4.184 4 C -0.161 4.161 5 C -0.137 4.137 6 C 0.024 3.976 7 N -0.396 5.396 8 C -0.003 4.003 9 C -0.187 4.187 10 C -0.144 4.144 11 C 0.070 3.930 12 C -0.498 4.498 13 H 0.090 0.910 14 C -0.141 4.141 15 N -0.436 5.436 16 Si 0.727 3.273 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.203 1.203 20 C -0.206 4.206 21 C -0.183 4.183 22 C -0.161 4.161 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.215 0.785 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.553 14.799 3.655 16.593 hybrid contribution 0.353 -0.592 -0.125 0.700 sum -6.200 14.207 3.530 15.898 Atomic orbital electron populations 1.21727 0.94347 1.01805 1.01363 1.21800 0.95101 0.94745 0.97642 1.21581 1.00647 0.94619 1.01557 1.23028 0.97708 0.99025 0.96328 1.22695 0.97157 0.96644 0.97221 1.20983 0.90885 0.93173 0.92549 1.43857 1.43454 1.06687 1.45622 1.17376 0.98327 0.84292 1.00338 1.20092 1.03010 0.93209 1.02392 1.20934 0.99762 0.94510 0.99176 1.17494 0.92297 0.92602 0.90624 1.19389 1.01013 0.90284 1.39137 0.90957 1.25788 0.94327 1.00878 0.93070 1.69865 1.04697 1.32368 1.36671 0.86379 0.80600 0.81848 0.78496 1.18658 1.19994 1.20316 1.20540 1.04579 0.92928 1.02582 1.19806 1.00411 0.96651 1.01452 1.23131 0.97804 0.98843 0.96327 0.92777 0.92847 0.92452 0.92413 0.92586 0.92568 0.89855 0.91568 0.89229 0.93708 0.93544 0.78507 0.89479 0.86427 0.91440 0.89109 0.89675 0.91762 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.19 37.16 0.34 -0.82 16 2 C -0.09 -0.87 1.39 -153.69 -0.21 -1.08 16 3 C -0.13 -1.05 9.07 37.16 0.34 -0.71 16 4 C -0.12 -1.25 6.79 -25.91 -0.18 -1.42 16 5 C -0.12 -1.38 3.40 -89.80 -0.31 -1.68 16 6 C 0.15 2.28 4.72 -4.04 -0.02 2.26 16 7 N -0.76 -13.58 5.70 -58.50 -0.33 -13.91 16 8 C 0.09 2.10 6.67 -83.69 -0.56 1.54 16 9 C -0.17 -3.98 9.23 -39.77 -0.37 -4.35 16 10 C -0.12 -3.32 8.64 -39.26 -0.34 -3.66 16 11 C 0.07 2.01 5.57 -106.79 -0.60 1.41 16 12 C -0.47 -12.92 9.03 -37.87 -0.34 -13.26 16 13 H 0.07 1.94 7.91 -52.49 -0.41 1.52 16 14 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 15 N -0.81 -21.82 10.96 55.54 0.61 -21.21 16 16 Si 0.90 19.51 29.60 -169.99 -5.03 14.48 16 17 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 C -0.19 -4.72 9.74 -39.27 -0.38 -5.10 16 21 C -0.16 -3.71 9.82 -39.77 -0.39 -4.10 16 22 C -0.12 -1.35 6.75 -25.92 -0.17 -1.53 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 26 H 0.06 0.49 7.35 -51.93 -0.38 0.11 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 29 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 30 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.09 1.02 7.66 -51.93 -0.40 0.62 16 32 H 0.04 0.72 7.91 -51.93 -0.41 0.31 16 33 H 0.05 0.76 7.67 -51.93 -0.40 0.36 16 34 H 0.38 6.12 8.47 -40.82 -0.35 5.77 16 35 H 0.09 1.93 6.68 -52.48 -0.35 1.58 16 36 H 0.12 3.27 6.16 -52.48 -0.32 2.94 16 37 H 0.27 6.77 8.30 -40.82 -0.34 6.43 16 38 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 39 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.08 0.98 7.74 -51.93 -0.40 0.58 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -28.36 329.46 -9.83 -38.20 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.77 Total: 8.12 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: -3.27 Total: -30.65 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.28 Total: -35.12 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.36 -9.83 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723589478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.850 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds