Wall clock time and date at job start Mon Mar 30 2020 07:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99905 * 2 1 4 4 H 1.48502 * 109.46915 * 270.00041 * 3 2 1 5 5 H 1.48501 * 109.47157 * 29.99847 * 3 2 1 6 6 H 1.48502 * 109.47188 * 149.99726 * 3 2 1 7 7 C 1.37879 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00158 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99584 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.47002 * 180.02562 * 9 7 2 11 11 C 1.46905 * 111.00110 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46945 * 179.97438 * 11 10 9 13 13 C 1.38259 * 120.00222 * 270.23771 * 12 11 10 14 14 C 1.38211 * 119.99788 * 180.30553 * 13 12 11 15 15 C 1.38256 * 120.00062 * 359.45940 * 14 13 12 16 16 C 1.38214 * 120.00160 * 0.26318 * 15 14 13 17 17 C 1.50700 * 120.00249 * 179.97438 * 16 15 14 18 18 C 1.54265 * 110.03165 * 57.90630 * 17 16 15 19 19 C 1.54957 * 104.16341 * 217.13786 * 18 17 16 20 20 C 1.54888 * 102.77782 * 37.88526 * 19 18 17 21 21 C 1.53875 * 110.03104 * 300.68960 * 17 16 15 22 22 C 1.38212 * 119.99667 * 90.00730 * 12 11 10 23 23 H 0.96999 * 120.00161 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47237 * 60.00148 * 9 7 2 25 25 H 1.08998 * 109.47406 * 300.00020 * 9 7 2 26 26 H 1.00895 * 110.99922 * 303.95816 * 10 9 7 27 27 H 1.09004 * 109.46642 * 60.00133 * 11 10 9 28 28 H 1.08995 * 109.47409 * 300.00382 * 11 10 9 29 29 H 1.07998 * 119.99812 * 0.04290 * 13 12 11 30 30 H 1.08002 * 120.00200 * 179.74545 * 14 13 12 31 31 H 1.07999 * 120.00077 * 180.28382 * 15 14 13 32 32 H 1.09000 * 110.01596 * 179.29798 * 17 16 15 33 33 H 1.09006 * 110.48742 * 335.78839 * 18 17 16 34 34 H 1.09005 * 110.48696 * 98.42384 * 18 17 16 35 35 H 1.09004 * 110.71716 * 279.57946 * 19 18 17 36 36 H 1.08998 * 110.92559 * 156.29590 * 19 18 17 37 37 H 1.08991 * 110.49164 * 203.40609 * 20 19 18 38 38 H 1.09002 * 110.59581 * 80.81876 * 20 19 18 39 39 H 1.08993 * 110.03132 * 238.56652 * 21 17 16 40 40 H 1.09004 * 110.03310 * 359.95276 * 21 17 16 41 41 H 1.08002 * 120.00332 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5790 0.0010 11 6 5.4697 -2.6182 0.0009 12 6 5.9339 -4.0519 0.0015 13 6 6.1422 -4.7107 1.1990 14 6 6.5740 -6.0236 1.1994 15 6 6.7870 -6.6817 0.0023 16 6 6.5732 -6.0249 -1.1949 17 6 6.8059 -6.7420 -2.4998 18 6 5.9258 -8.0070 -2.5718 19 6 6.8195 -9.0503 -3.2887 20 6 8.2249 -8.7536 -2.7091 21 6 8.2671 -7.2162 -2.5874 22 6 6.1469 -4.7097 -1.1953 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 3.6254 -3.0955 0.7820 27 1 5.8466 -2.1143 0.8910 28 1 5.8466 -2.1141 -0.8889 29 1 5.9716 -4.1981 2.1341 30 1 6.7407 -6.5370 2.1349 31 1 7.1200 -7.7091 0.0026 32 1 6.5774 -6.0801 -3.3351 33 1 5.6680 -8.3499 -1.5698 34 1 5.0244 -7.8120 -3.1529 35 1 6.8057 -8.8937 -4.3674 36 1 6.5068 -10.0652 -3.0431 37 1 9.0003 -9.1037 -3.3903 38 1 8.3413 -9.2171 -1.7294 39 1 8.7475 -6.7853 -3.4657 40 1 8.8082 -6.9270 -1.6864 41 1 5.9802 -4.1964 -2.1308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825722145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:00 Heat of formation + Delta-G solvation = 0.217220 kcal Electronic energy + Delta-G solvation = -18498.772362 eV Core-core repulsion = 15762.990205 eV Total energy + Delta-G solvation = -2735.782157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85614 -37.72010 -35.37236 -32.65223 -31.69156 -30.94706 -28.83149 -27.79783 -27.24765 -24.38101 -22.23307 -21.56403 -21.07871 -20.76242 -19.10636 -16.94740 -16.55614 -16.02096 -15.37987 -15.06934 -14.84675 -14.17126 -14.03083 -13.64346 -13.53467 -13.20226 -13.01529 -12.64145 -12.38742 -11.92028 -11.70654 -11.64327 -11.39568 -11.29615 -11.22031 -10.98118 -10.82166 -10.78999 -10.60229 -10.47845 -10.35027 -9.85455 -9.30040 -8.61388 -8.58866 -8.44554 -7.46909 -6.05860 -4.03986 1.50618 1.58474 3.28706 3.35709 3.37972 3.87320 4.41739 4.43580 4.51498 4.56070 4.96790 5.02285 5.05828 5.23968 5.26501 5.29133 5.39874 5.41293 5.42945 5.48900 5.49691 5.62766 5.66513 5.72884 5.73273 5.87805 5.92996 6.02716 6.07774 6.11533 6.18339 6.27050 6.30160 6.62397 6.73069 6.75605 6.90505 7.00905 7.18601 7.59051 7.87658 8.31699 8.64609 9.02417 9.55744 11.07451 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032608 B = 0.003569 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.467331 B = 7842.684737 C = 8125.600104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.674 5.674 11 C 0.091 3.909 12 C -0.066 4.066 13 C -0.120 4.120 14 C -0.121 4.121 15 C -0.123 4.123 16 C -0.077 4.077 17 C -0.053 4.053 18 C -0.117 4.117 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.096 4.096 23 H 0.264 0.736 24 H -0.015 1.015 25 H 0.023 0.977 26 H 0.337 0.663 27 H 0.028 0.972 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.964 -16.029 -2.900 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.305 5.305 11 C -0.038 4.038 12 C -0.066 4.066 13 C -0.139 4.139 14 C -0.139 4.139 15 C -0.141 4.141 16 C -0.077 4.077 17 C -0.071 4.071 18 C -0.155 4.155 19 C -0.163 4.163 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.115 4.115 23 H 0.074 0.926 24 H 0.002 0.998 25 H 0.041 0.959 26 H 0.154 0.846 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.746 -15.941 -3.587 24.123 hybrid contribution 0.475 1.285 0.955 1.670 sum 18.221 -14.657 -2.632 23.532 Atomic orbital electron populations 1.69900 1.06163 1.26887 1.50964 1.24910 0.94761 0.98954 0.94729 0.86815 0.80237 0.83804 0.78605 1.20115 1.21196 1.19262 1.21056 0.88892 0.94846 1.50626 0.90282 1.20029 0.96706 0.84895 0.94801 1.60531 1.03489 1.16730 1.49718 1.20929 0.91099 0.91271 1.00498 1.19948 0.97330 0.96362 0.92962 1.21048 1.00275 0.94947 0.97635 1.21024 1.00301 0.94829 0.97704 1.20843 1.01770 0.99471 0.91995 1.19798 0.99388 0.94049 0.94439 1.20772 0.95111 0.96502 0.94756 1.22511 0.97881 0.93981 1.01109 1.22523 0.95100 0.98806 0.99909 1.22370 0.97161 0.95898 1.00770 1.22255 0.95788 0.95421 1.02013 1.20956 0.98759 0.93848 0.97918 0.92632 0.99786 0.95948 0.84586 0.95396 0.90918 0.86498 0.86528 0.86656 0.90305 0.91128 0.91382 0.91566 0.91691 0.91917 0.91780 0.91807 0.91445 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -15.02 9.87 -34.44 -0.34 -15.36 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.16 4.04 4.51 -4.97 -0.02 4.02 16 10 N -0.67 -14.40 6.48 -116.33 -0.75 -15.15 16 11 C 0.09 1.59 5.81 -4.97 -0.03 1.56 16 12 C -0.07 -1.01 5.39 -104.62 -0.56 -1.58 16 13 C -0.12 -1.68 9.70 -39.58 -0.38 -2.06 16 14 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 15 C -0.12 -1.45 8.11 -39.58 -0.32 -1.77 16 16 C -0.08 -0.96 4.69 -104.62 -0.49 -1.45 16 17 C -0.05 -0.55 3.13 -90.65 -0.28 -0.83 16 18 C -0.12 -1.13 6.27 -25.04 -0.16 -1.29 16 19 C -0.13 -0.99 6.91 -24.70 -0.17 -1.17 16 20 C -0.12 -0.95 6.83 -25.07 -0.17 -1.12 16 21 C -0.12 -1.04 6.24 -25.61 -0.16 -1.20 16 22 C -0.10 -1.40 9.33 -39.58 -0.37 -1.77 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H -0.02 -0.38 7.20 -51.93 -0.37 -0.76 16 25 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 26 H 0.34 7.07 8.71 -39.29 -0.34 6.73 16 27 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 29 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.15 7.78 -52.49 -0.41 0.74 16 32 H 0.08 0.83 7.91 -51.93 -0.41 0.42 16 33 H 0.07 0.71 6.91 -51.93 -0.36 0.35 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.63 7.28 -51.93 -0.38 0.25 16 41 H 0.12 1.72 7.96 -52.49 -0.42 1.30 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -30.83 329.80 -10.53 -41.36 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.89 Total: 2.90 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -3.96 Total: -23.99 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.02 Total: -42.33 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.83 -10.53 -41.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825722145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.581 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds