Wall clock time and date at job start Mon Mar 30 2020 07:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99905 * 2 1 4 4 H 1.48502 * 109.46915 * 270.00041 * 3 2 1 5 5 H 1.48501 * 109.47157 * 29.99847 * 3 2 1 6 6 H 1.48502 * 109.47188 * 149.99726 * 3 2 1 7 7 C 1.37879 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00158 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99584 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.47002 * 180.02562 * 9 7 2 11 11 C 1.46905 * 111.00110 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46945 * 179.97438 * 11 10 9 13 13 C 1.38259 * 120.00222 * 270.23771 * 12 11 10 14 14 C 1.38211 * 119.99788 * 180.30553 * 13 12 11 15 15 C 1.38256 * 120.00062 * 359.45940 * 14 13 12 16 16 C 1.38214 * 120.00160 * 0.26318 * 15 14 13 17 17 C 1.50700 * 120.00249 * 179.97438 * 16 15 14 18 18 C 1.54265 * 110.03165 * 57.90630 * 17 16 15 19 19 C 1.54957 * 104.16341 * 217.13786 * 18 17 16 20 20 C 1.54888 * 102.77782 * 37.88526 * 19 18 17 21 21 C 1.53875 * 110.03104 * 300.68960 * 17 16 15 22 22 C 1.38212 * 119.99667 * 90.00730 * 12 11 10 23 23 H 0.96999 * 120.00161 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47237 * 60.00148 * 9 7 2 25 25 H 1.08998 * 109.47406 * 300.00020 * 9 7 2 26 26 H 1.00895 * 110.99922 * 303.95816 * 10 9 7 27 27 H 1.09004 * 109.46642 * 60.00133 * 11 10 9 28 28 H 1.08995 * 109.47409 * 300.00382 * 11 10 9 29 29 H 1.07998 * 119.99812 * 0.04290 * 13 12 11 30 30 H 1.08002 * 120.00200 * 179.74545 * 14 13 12 31 31 H 1.07999 * 120.00077 * 180.28382 * 15 14 13 32 32 H 1.09000 * 110.01596 * 179.29798 * 17 16 15 33 33 H 1.09006 * 110.48742 * 335.78839 * 18 17 16 34 34 H 1.09005 * 110.48696 * 98.42384 * 18 17 16 35 35 H 1.09004 * 110.71716 * 279.57946 * 19 18 17 36 36 H 1.08998 * 110.92559 * 156.29590 * 19 18 17 37 37 H 1.08991 * 110.49164 * 203.40609 * 20 19 18 38 38 H 1.09002 * 110.59581 * 80.81876 * 20 19 18 39 39 H 1.08993 * 110.03132 * 238.56652 * 21 17 16 40 40 H 1.09004 * 110.03310 * 359.95276 * 21 17 16 41 41 H 1.08002 * 120.00332 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5790 0.0010 11 6 5.4697 -2.6182 0.0009 12 6 5.9339 -4.0519 0.0015 13 6 6.1422 -4.7107 1.1990 14 6 6.5740 -6.0236 1.1994 15 6 6.7870 -6.6817 0.0023 16 6 6.5732 -6.0249 -1.1949 17 6 6.8059 -6.7420 -2.4998 18 6 5.9258 -8.0070 -2.5718 19 6 6.8195 -9.0503 -3.2887 20 6 8.2249 -8.7536 -2.7091 21 6 8.2671 -7.2162 -2.5874 22 6 6.1469 -4.7097 -1.1953 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 3.6254 -3.0955 0.7820 27 1 5.8466 -2.1143 0.8910 28 1 5.8466 -2.1141 -0.8889 29 1 5.9716 -4.1981 2.1341 30 1 6.7407 -6.5370 2.1349 31 1 7.1200 -7.7091 0.0026 32 1 6.5774 -6.0801 -3.3351 33 1 5.6680 -8.3499 -1.5698 34 1 5.0244 -7.8120 -3.1529 35 1 6.8057 -8.8937 -4.3674 36 1 6.5068 -10.0652 -3.0431 37 1 9.0003 -9.1037 -3.3903 38 1 8.3413 -9.2171 -1.7294 39 1 8.7475 -6.7853 -3.4657 40 1 8.8082 -6.9270 -1.6864 41 1 5.9802 -4.1964 -2.1308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825722145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:59 Heat of formation + Delta-G solvation = -17.256525 kcal Electronic energy + Delta-G solvation = -18499.530080 eV Core-core repulsion = 15762.990205 eV Total energy + Delta-G solvation = -2736.539876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.81530 -38.63341 -36.96077 -34.67761 -32.74470 -32.27329 -29.52227 -29.38650 -28.31914 -25.91028 -23.24743 -23.12394 -22.52483 -21.40790 -20.07058 -18.97024 -17.64840 -17.09373 -16.66633 -16.20026 -16.03896 -15.60572 -15.57751 -15.01511 -14.61550 -14.32136 -14.24301 -14.04795 -13.59830 -13.42809 -13.14332 -12.82037 -12.61198 -12.51577 -12.18527 -11.93370 -11.91690 -11.88481 -11.83545 -11.61520 -11.47579 -11.36371 -11.29872 -10.83202 -9.68200 -9.49994 -9.15017 -8.32314 -6.37579 0.45738 0.54404 1.34014 1.35668 1.46843 2.32405 2.82217 3.01449 3.62957 3.66103 3.73583 3.86761 3.98847 4.09536 4.21777 4.30347 4.41884 4.56069 4.58068 4.61675 4.68075 4.70308 4.72212 4.75626 4.87796 4.91442 5.02934 5.03672 5.12535 5.15958 5.20232 5.31878 5.36095 5.43548 5.47831 5.51290 5.61612 5.74928 5.80566 5.90381 6.16936 6.50811 6.59836 6.71777 7.27352 8.84569 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032608 B = 0.003569 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.467331 B = 7842.684737 C = 8125.600104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.250 1.250 7 C -0.531 4.531 8 H 0.035 0.965 9 C 0.174 3.826 10 N -0.684 5.684 11 C 0.096 3.904 12 C -0.085 4.085 13 C -0.131 4.131 14 C -0.119 4.119 15 C -0.119 4.119 16 C -0.076 4.076 17 C -0.055 4.055 18 C -0.119 4.119 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.114 4.114 22 C -0.115 4.115 23 H 0.269 0.731 24 H -0.010 1.010 25 H 0.026 0.974 26 H 0.336 0.664 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.123 0.877 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.395 -16.681 -2.745 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.174 1.174 7 C -0.569 4.569 8 H 0.053 0.947 9 C 0.046 3.954 10 N -0.315 5.315 11 C -0.033 4.033 12 C -0.086 4.086 13 C -0.150 4.150 14 C -0.137 4.137 15 C -0.137 4.137 16 C -0.076 4.076 17 C -0.074 4.074 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.134 4.134 23 H 0.078 0.922 24 H 0.007 0.993 25 H 0.044 0.956 26 H 0.153 0.847 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.141 0.859 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 20.198 -16.615 -3.434 26.378 hybrid contribution -0.317 1.349 0.895 1.650 sum 19.881 -15.267 -2.539 25.194 Atomic orbital electron populations 1.70054 1.08218 1.28337 1.52138 1.25912 0.95688 1.03413 0.93991 0.85617 0.79273 0.78106 0.79325 1.18972 1.20454 1.17369 1.21319 0.91349 0.93443 1.50788 0.94695 1.19780 0.93750 0.86954 0.94913 1.60426 1.06330 1.14778 1.49944 1.20920 0.88323 0.93185 1.00851 1.19836 0.99144 0.95527 0.94052 1.21206 1.00623 0.95881 0.97287 1.21354 0.99054 0.94155 0.99102 1.21152 1.00616 1.00433 0.91478 1.20036 0.98389 0.93349 0.95866 1.20826 0.96562 0.96572 0.93408 1.22512 0.97840 0.94205 1.01085 1.22512 0.94812 0.98679 0.99914 1.22369 0.97237 0.94740 1.01457 1.22230 0.94350 0.96497 1.02089 1.21037 0.99915 0.94973 0.97433 0.92248 0.99274 0.95636 0.84700 0.94530 0.90848 0.85876 0.83821 0.84290 0.91034 0.91441 0.92227 0.91253 0.90651 0.90668 0.91157 0.91332 0.91788 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 2 C 0.01 0.45 5.47 84.66 0.46 0.91 16 3 Si 0.95 44.63 27.47 68.60 1.88 46.51 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 7 C -0.53 -31.72 9.87 25.60 0.25 -31.47 16 8 H 0.03 2.32 8.06 -2.91 -0.02 2.30 16 9 C 0.17 8.61 4.51 85.56 0.39 9.00 16 10 N -0.68 -29.55 6.48 -521.97 -3.38 -32.93 16 11 C 0.10 3.31 5.81 85.56 0.50 3.81 16 12 C -0.09 -2.61 5.39 -19.87 -0.11 -2.71 16 13 C -0.13 -3.52 9.70 22.27 0.22 -3.30 16 14 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 15 C -0.12 -2.55 8.11 22.27 0.18 -2.37 16 16 C -0.08 -1.83 4.69 -19.86 -0.09 -1.93 16 17 C -0.06 -1.09 3.13 -10.82 -0.03 -1.12 16 18 C -0.12 -2.14 6.27 31.69 0.20 -1.94 16 19 C -0.12 -1.65 6.91 31.91 0.22 -1.43 16 20 C -0.12 -1.51 6.83 31.67 0.22 -1.30 16 21 C -0.11 -1.80 6.24 31.32 0.20 -1.60 16 22 C -0.11 -3.33 9.33 22.27 0.21 -3.13 16 23 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 24 H -0.01 -0.50 7.20 -2.39 -0.02 -0.52 16 25 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 26 H 0.34 14.43 8.71 -89.70 -0.78 13.65 16 27 H 0.04 1.20 8.09 -2.38 -0.02 1.18 16 28 H 0.07 2.48 8.09 -2.39 -0.02 2.46 16 29 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.14 2.31 7.78 -2.91 -0.02 2.29 16 32 H 0.07 1.50 7.91 -2.39 -0.02 1.48 16 33 H 0.07 1.25 6.91 -2.38 -0.02 1.23 16 34 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 1.06 7.28 -2.38 -0.02 1.04 16 41 H 0.11 3.34 7.96 -2.91 -0.02 3.32 16 Total: -1.00 -67.17 329.80 1.98 -65.19 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.15 Total: 22.12 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 3.02 Total: -41.00 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -3.08 Total: -92.81 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -67.17 1.98 -65.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825722145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.934 kcal (2) G-P(sol) polarization free energy of solvation -67.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds