Wall clock time and date at job start Mon Mar 30 2020 07:04:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09004 * 109.47199 * 2 1
4 4 C 1.53001 * 109.47269 * 239.99800 * 2 1 3
5 5 C 1.50699 * 109.47045 * 175.93497 * 4 2 1
6 6 H 1.08002 * 119.99947 * 359.97438 * 5 4 2
7 7 C 1.37876 * 119.99691 * 179.97438 * 5 4 2
8 8 N 1.31516 * 120.00137 * 0.02562 * 7 5 4
9 9 Si 1.86800 * 119.99894 * 179.97438 * 7 5 4
10 10 H 1.48500 * 109.47100 * 0.02562 * 9 7 5
11 11 H 1.48510 * 109.46940 * 120.00272 * 9 7 5
12 12 H 1.48498 * 109.47634 * 240.00039 * 9 7 5
13 13 N 1.46903 * 109.47065 * 119.99700 * 2 1 3
14 14 C 1.46793 * 110.99737 * 53.33674 * 13 2 1
15 15 C 1.53051 * 110.05610 * 171.19121 * 14 13 2
16 16 C 1.53333 * 109.16732 * 61.96958 * 15 14 13
17 17 C 1.53234 * 108.67678 * 306.00322 * 16 15 14
18 18 C 1.52785 * 117.72608 * 266.01709 * 17 16 15
19 19 C 1.52756 * 117.77863 * 197.06955 * 17 16 15
20 20 F 1.39898 * 117.50608 * 215.16085 * 19 17 16
21 21 F 1.39899 * 117.50427 * 0.21507 * 19 17 16
22 22 C 1.47052 * 111.00057 * 289.12986 * 13 2 1
23 23 H 1.08997 * 109.47045 * 300.00295 * 1 2 3
24 24 H 1.09000 * 109.46851 * 60.00048 * 1 2 3
25 25 H 1.08996 * 109.47370 * 180.02562 * 1 2 3
26 26 H 1.08999 * 109.47095 * 295.93627 * 4 2 1
27 27 H 1.08995 * 109.46681 * 55.93055 * 4 2 1
28 28 H 0.96999 * 119.99970 * 180.02562 * 8 7 5
29 29 H 1.09001 * 109.40129 * 291.23099 * 14 13 2
30 30 H 1.08995 * 109.40142 * 51.05719 * 14 13 2
31 31 H 1.09001 * 109.36934 * 302.16257 * 15 14 13
32 32 H 1.08996 * 109.69511 * 181.97322 * 15 14 13
33 33 H 1.09006 * 109.62826 * 186.20167 * 16 15 14
34 34 H 1.08999 * 109.62845 * 65.81417 * 16 15 14
35 35 H 1.08997 * 117.51055 * 359.69395 * 18 17 16
36 36 H 1.09004 * 117.50981 * 144.72968 * 18 17 16
37 37 H 1.09003 * 109.56414 * 62.35647 * 22 13 2
38 38 H 1.08997 * 109.56399 * 302.01023 * 22 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 3.5437 -0.6346 -1.3006
6 1 4.0817 -0.1165 -0.5204
7 6 4.2325 -1.2168 -2.3435
8 7 3.5773 -1.8473 -3.2936
9 14 6.0963 -1.1088 -2.4075
10 1 6.5890 -0.3514 -1.2291
11 1 6.6722 -2.4776 -2.3919
12 1 6.5093 -0.4122 -3.6523
13 7 2.0197 -0.6924 1.1995
14 6 1.4235 -2.0288 1.3156
15 6 2.1055 -2.8120 2.4399
16 6 1.8799 -2.0831 3.7699
17 6 2.3473 -0.6316 3.6194
18 6 3.7765 -0.2975 4.0439
19 6 2.5942 0.1726 4.8945
20 9 2.2817 1.5360 4.8691
21 9 2.3808 -0.4730 6.1171
22 6 1.7712 0.1075 2.4081
23 1 -0.3633 0.5139 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0276 0.0005
26 1 1.7374 -1.7678 -1.2135
27 1 1.6184 -0.2513 -2.1376
28 1 4.0619 -2.2571 -4.0271
29 1 0.3607 -1.9331 1.5379
30 1 1.5497 -2.5646 0.3748
31 1 3.1746 -2.8778 2.2376
32 1 1.6826 -3.8148 2.4979
33 1 2.4529 -2.5725 4.5575
34 1 0.8197 -2.1021 4.0225
35 1 4.3879 -1.1097 4.4369
36 1 4.3109 0.4552 3.4642
37 1 0.6980 0.2447 2.5408
38 1 2.2555 1.0788 2.3089
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000844438799.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:04:51
Heat of formation + Delta-G solvation = -75.278201 kcal
Electronic energy + Delta-G solvation = -20526.159899 eV
Core-core repulsion = 17232.874485 eV
Total energy + Delta-G solvation = -3293.285414 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.144 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-48.60368 -47.27857 -39.32093 -36.32325 -33.23474 -32.32341 -30.07196 -27.50690
-27.22321 -24.29145 -22.74827 -22.71512 -21.93164 -19.29254 -18.38767 -17.54557
-16.62771 -16.15457 -15.92991 -15.05520 -14.51438 -14.36796 -14.22495 -14.02625
-13.93261 -13.53353 -13.39982 -13.11782 -12.83323 -12.47992 -12.20611 -11.89166
-11.76131 -11.46896 -11.22987 -10.89801 -10.80376 -10.57286 -10.37368 -10.34843
-10.21670 -9.89933 -9.61634 -9.16745 -8.96098 -8.27524 -7.52793 -5.90392
-3.87987 3.04028 3.18354 3.36569 3.44434 3.49245 4.25501 4.32125
4.52144 4.55659 4.75894 4.92815 5.21976 5.35945 5.46390 5.54664
5.60751 5.69300 5.73244 5.79712 5.83096 5.88690 5.90475 5.98659
6.03058 6.08396 6.18605 6.41068 6.55667 6.60091 6.69535 6.94879
7.50781 7.62329 7.86752 7.97629 8.10750 8.56313 9.18184 9.73814
11.21657
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.022618 B = 0.006168 C = 0.005684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1237.678684 B = 4538.204657 C = 4924.739599
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.087 3.913
3 H 0.070 0.930
4 C 0.030 3.970
5 C -0.488 4.488
6 H 0.061 0.939
7 C 0.050 3.950
8 N -0.904 5.904
9 Si 0.888 3.112
10 H -0.273 1.273
11 H -0.287 1.287
12 H -0.288 1.288
13 N -0.504 5.504
14 C 0.053 3.947
15 C -0.112 4.112
16 C -0.084 4.084
17 C -0.103 4.103
18 C -0.153 4.153
19 C 0.185 3.815
20 F -0.164 7.164
21 F -0.166 7.166
22 C 0.087 3.913
23 H 0.039 0.961
24 H 0.057 0.943
25 H 0.053 0.947
26 H 0.020 0.980
27 H 0.019 0.981
28 H 0.257 0.743
29 H 0.024 0.976
30 H 0.091 0.909
31 H 0.077 0.923
32 H 0.067 0.933
33 H 0.068 0.932
34 H 0.068 0.932
35 H 0.118 0.882
36 H 0.124 0.876
37 H 0.038 0.962
38 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.968 0.958 14.206 14.781
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.244 4.244
2 C -0.020 4.020
3 H 0.088 0.912
4 C -0.007 4.007
5 C -0.527 4.527
6 H 0.079 0.921
7 C -0.149 4.149
8 N -0.545 5.545
9 Si 0.717 3.283
10 H -0.198 1.198
11 H -0.214 1.214
12 H -0.214 1.214
13 N -0.227 5.227
14 C -0.075 4.075
15 C -0.150 4.150
16 C -0.121 4.121
17 C -0.104 4.104
18 C -0.191 4.191
19 C 0.148 3.852
20 F -0.144 7.144
21 F -0.146 7.146
22 C -0.041 4.041
23 H 0.058 0.942
24 H 0.076 0.924
25 H 0.072 0.928
26 H 0.038 0.962
27 H 0.037 0.963
28 H 0.066 0.934
29 H 0.042 0.958
30 H 0.109 0.891
31 H 0.096 0.904
32 H 0.085 0.915
33 H 0.087 0.913
34 H 0.086 0.914
35 H 0.137 0.863
36 H 0.142 0.858
37 H 0.056 0.944
38 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -3.444 0.835 14.029 14.469
hybrid contribution 0.102 0.277 0.228 0.373
sum -3.342 1.112 14.257 14.686
Atomic orbital electron populations
1.22534 0.99673 1.01432 1.00746 1.21938 0.90116 0.98388 0.91600
0.91169 1.19208 0.96456 0.95327 0.89693 1.21196 0.91604 1.33149
1.06707 0.92064 1.25001 0.97963 0.95952 0.95981 1.69971 1.35063
1.37331 1.12136 0.86594 0.86531 0.77516 0.77668 1.19796 1.21365
1.21434 1.62055 1.58451 1.01715 1.00468 1.22088 0.94756 0.90840
0.99782 1.21583 1.02736 0.97657 0.92976 1.21234 1.01109 0.90891
0.98905 1.22866 0.98403 0.96795 0.92382 1.24367 0.92166 1.03889
0.98692 1.20384 1.07824 0.76135 0.80901 1.92995 1.93983 1.30933
1.96522 1.92980 1.95792 1.80218 1.45631 1.21642 0.97896 0.96262
0.88317 0.94195 0.92417 0.92751 0.96214 0.96267 0.93382 0.95792
0.89082 0.90438 0.91483 0.91301 0.91353 0.86337 0.85757 0.94410
0.90298
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.08 8.44 37.16 0.31 -2.76 16
2 C 0.09 1.70 2.26 -67.71 -0.15 1.55 16
3 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16
4 C 0.03 0.74 4.38 -27.88 -0.12 0.62 16
5 C -0.49 -13.26 8.81 -34.44 -0.30 -13.57 16
6 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16
7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16
8 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16
9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16
10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
13 N -0.50 -9.03 4.30 -226.48 -0.97 -10.00 16
14 C 0.05 0.88 4.35 -3.86 -0.02 0.86 16
15 C -0.11 -1.55 6.13 -26.53 -0.16 -1.72 16
16 C -0.08 -1.05 5.42 -26.44 -0.14 -1.19 16
17 C -0.10 -1.40 2.12 -154.55 -0.33 -1.73 16
18 C -0.15 -1.91 9.89 -26.82 -0.27 -2.18 16
19 C 0.18 2.47 5.15 -26.83 -0.14 2.33 16
20 F -0.16 -2.36 17.07 2.25 0.04 -2.32 16
21 F -0.17 -2.25 17.09 2.25 0.04 -2.21 16
22 C 0.09 1.34 4.64 -3.67 -0.02 1.32 16
23 H 0.04 0.59 6.77 -51.93 -0.35 0.24 16
24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
25 H 0.05 0.89 6.52 -51.93 -0.34 0.55 16
26 H 0.02 0.51 6.24 -51.93 -0.32 0.19 16
27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16
28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16
29 H 0.02 0.37 6.75 -51.93 -0.35 0.02 16
30 H 0.09 1.74 6.07 -51.93 -0.32 1.43 16
31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.07 0.78 8.00 -51.93 -0.42 0.36 16
34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
35 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16
36 H 0.12 1.55 8.14 -51.93 -0.42 1.12 16
37 H 0.04 0.57 6.76 -51.93 -0.35 0.22 16
38 H 0.08 1.22 7.91 -51.93 -0.41 0.81 16
LS Contribution 305.76 15.07 4.61 4.61
Total: -1.00 -28.94 305.76 -7.78 -36.72
By element:
Atomic # 1 Polarization: 3.52 SS G_CDS: -5.77 Total: -2.26 kcal
Atomic # 6 Polarization: -13.71 SS G_CDS: -1.43 Total: -15.14 kcal
Atomic # 7 Polarization: -35.80 SS G_CDS: -0.24 Total: -36.03 kcal
Atomic # 9 Polarization: -4.61 SS G_CDS: 0.08 Total: -4.54 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Total LS contribution 4.61 Total: 4.61 kcal
Total: -28.94 -7.78 -36.72 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000844438799.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.559 kcal
(2) G-P(sol) polarization free energy of solvation -28.939 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.498 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.278 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds