Wall clock time and date at job start Mon Mar 30 2020 07:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47199 * 2 1 4 4 C 1.53001 * 109.47269 * 239.99800 * 2 1 3 5 5 C 1.50699 * 109.47045 * 175.93497 * 4 2 1 6 6 H 1.08002 * 119.99947 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99691 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00137 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99894 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47100 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.46940 * 120.00272 * 9 7 5 12 12 H 1.48498 * 109.47634 * 240.00039 * 9 7 5 13 13 N 1.46903 * 109.47065 * 119.99700 * 2 1 3 14 14 C 1.46793 * 110.99737 * 53.33674 * 13 2 1 15 15 C 1.53051 * 110.05610 * 171.19121 * 14 13 2 16 16 C 1.53333 * 109.16732 * 61.96958 * 15 14 13 17 17 C 1.53234 * 108.67678 * 306.00322 * 16 15 14 18 18 C 1.52785 * 117.72608 * 266.01709 * 17 16 15 19 19 C 1.52756 * 117.77863 * 197.06955 * 17 16 15 20 20 F 1.39898 * 117.50608 * 215.16085 * 19 17 16 21 21 F 1.39899 * 117.50427 * 0.21507 * 19 17 16 22 22 C 1.47052 * 111.00057 * 289.12986 * 13 2 1 23 23 H 1.08997 * 109.47045 * 300.00295 * 1 2 3 24 24 H 1.09000 * 109.46851 * 60.00048 * 1 2 3 25 25 H 1.08996 * 109.47370 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47095 * 295.93627 * 4 2 1 27 27 H 1.08995 * 109.46681 * 55.93055 * 4 2 1 28 28 H 0.96999 * 119.99970 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.40129 * 291.23099 * 14 13 2 30 30 H 1.08995 * 109.40142 * 51.05719 * 14 13 2 31 31 H 1.09001 * 109.36934 * 302.16257 * 15 14 13 32 32 H 1.08996 * 109.69511 * 181.97322 * 15 14 13 33 33 H 1.09006 * 109.62826 * 186.20167 * 16 15 14 34 34 H 1.08999 * 109.62845 * 65.81417 * 16 15 14 35 35 H 1.08997 * 117.51055 * 359.69395 * 18 17 16 36 36 H 1.09004 * 117.50981 * 144.72968 * 18 17 16 37 37 H 1.09003 * 109.56414 * 62.35647 * 22 13 2 38 38 H 1.08997 * 109.56399 * 302.01023 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5437 -0.6346 -1.3006 6 1 4.0817 -0.1165 -0.5204 7 6 4.2325 -1.2168 -2.3435 8 7 3.5773 -1.8473 -3.2936 9 14 6.0963 -1.1088 -2.4075 10 1 6.5890 -0.3514 -1.2291 11 1 6.6722 -2.4776 -2.3919 12 1 6.5093 -0.4122 -3.6523 13 7 2.0197 -0.6924 1.1995 14 6 1.4235 -2.0288 1.3156 15 6 2.1055 -2.8120 2.4399 16 6 1.8799 -2.0831 3.7699 17 6 2.3473 -0.6316 3.6194 18 6 3.7765 -0.2975 4.0439 19 6 2.5942 0.1726 4.8945 20 9 2.2817 1.5360 4.8691 21 9 2.3808 -0.4730 6.1171 22 6 1.7712 0.1075 2.4081 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.7374 -1.7678 -1.2135 27 1 1.6184 -0.2513 -2.1376 28 1 4.0619 -2.2571 -4.0271 29 1 0.3607 -1.9331 1.5379 30 1 1.5497 -2.5646 0.3748 31 1 3.1746 -2.8778 2.2376 32 1 1.6826 -3.8148 2.4979 33 1 2.4529 -2.5725 4.5575 34 1 0.8197 -2.1021 4.0225 35 1 4.3879 -1.1097 4.4369 36 1 4.3109 0.4552 3.4642 37 1 0.6980 0.2447 2.5408 38 1 2.2555 1.0788 2.3089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844438799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:51 Heat of formation + Delta-G solvation = -75.278201 kcal Electronic energy + Delta-G solvation = -20526.159899 eV Core-core repulsion = 17232.874485 eV Total energy + Delta-G solvation = -3293.285414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.60368 -47.27857 -39.32093 -36.32325 -33.23474 -32.32341 -30.07196 -27.50690 -27.22321 -24.29145 -22.74827 -22.71512 -21.93164 -19.29254 -18.38767 -17.54557 -16.62771 -16.15457 -15.92991 -15.05520 -14.51438 -14.36796 -14.22495 -14.02625 -13.93261 -13.53353 -13.39982 -13.11782 -12.83323 -12.47992 -12.20611 -11.89166 -11.76131 -11.46896 -11.22987 -10.89801 -10.80376 -10.57286 -10.37368 -10.34843 -10.21670 -9.89933 -9.61634 -9.16745 -8.96098 -8.27524 -7.52793 -5.90392 -3.87987 3.04028 3.18354 3.36569 3.44434 3.49245 4.25501 4.32125 4.52144 4.55659 4.75894 4.92815 5.21976 5.35945 5.46390 5.54664 5.60751 5.69300 5.73244 5.79712 5.83096 5.88690 5.90475 5.98659 6.03058 6.08396 6.18605 6.41068 6.55667 6.60091 6.69535 6.94879 7.50781 7.62329 7.86752 7.97629 8.10750 8.56313 9.18184 9.73814 11.21657 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.022618 B = 0.006168 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.678684 B = 4538.204657 C = 4924.739599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.030 3.970 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.504 5.504 14 C 0.053 3.947 15 C -0.112 4.112 16 C -0.084 4.084 17 C -0.103 4.103 18 C -0.153 4.153 19 C 0.185 3.815 20 F -0.164 7.164 21 F -0.166 7.166 22 C 0.087 3.913 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.257 0.743 29 H 0.024 0.976 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.038 0.962 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 0.958 14.206 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.020 4.020 3 H 0.088 0.912 4 C -0.007 4.007 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.227 5.227 14 C -0.075 4.075 15 C -0.150 4.150 16 C -0.121 4.121 17 C -0.104 4.104 18 C -0.191 4.191 19 C 0.148 3.852 20 F -0.144 7.144 21 F -0.146 7.146 22 C -0.041 4.041 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.056 0.944 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.444 0.835 14.029 14.469 hybrid contribution 0.102 0.277 0.228 0.373 sum -3.342 1.112 14.257 14.686 Atomic orbital electron populations 1.22534 0.99673 1.01432 1.00746 1.21938 0.90116 0.98388 0.91600 0.91169 1.19208 0.96456 0.95327 0.89693 1.21196 0.91604 1.33149 1.06707 0.92064 1.25001 0.97963 0.95952 0.95981 1.69971 1.35063 1.37331 1.12136 0.86594 0.86531 0.77516 0.77668 1.19796 1.21365 1.21434 1.62055 1.58451 1.01715 1.00468 1.22088 0.94756 0.90840 0.99782 1.21583 1.02736 0.97657 0.92976 1.21234 1.01109 0.90891 0.98905 1.22866 0.98403 0.96795 0.92382 1.24367 0.92166 1.03889 0.98692 1.20384 1.07824 0.76135 0.80901 1.92995 1.93983 1.30933 1.96522 1.92980 1.95792 1.80218 1.45631 1.21642 0.97896 0.96262 0.88317 0.94195 0.92417 0.92751 0.96214 0.96267 0.93382 0.95792 0.89082 0.90438 0.91483 0.91301 0.91353 0.86337 0.85757 0.94410 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 8.44 37.16 0.31 -2.76 16 2 C 0.09 1.70 2.26 -67.71 -0.15 1.55 16 3 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16 4 C 0.03 0.74 4.38 -27.88 -0.12 0.62 16 5 C -0.49 -13.26 8.81 -34.44 -0.30 -13.57 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 N -0.50 -9.03 4.30 -226.48 -0.97 -10.00 16 14 C 0.05 0.88 4.35 -3.86 -0.02 0.86 16 15 C -0.11 -1.55 6.13 -26.53 -0.16 -1.72 16 16 C -0.08 -1.05 5.42 -26.44 -0.14 -1.19 16 17 C -0.10 -1.40 2.12 -154.55 -0.33 -1.73 16 18 C -0.15 -1.91 9.89 -26.82 -0.27 -2.18 16 19 C 0.18 2.47 5.15 -26.83 -0.14 2.33 16 20 F -0.16 -2.36 17.07 2.25 0.04 -2.32 16 21 F -0.17 -2.25 17.09 2.25 0.04 -2.21 16 22 C 0.09 1.34 4.64 -3.67 -0.02 1.32 16 23 H 0.04 0.59 6.77 -51.93 -0.35 0.24 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.89 6.52 -51.93 -0.34 0.55 16 26 H 0.02 0.51 6.24 -51.93 -0.32 0.19 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.02 0.37 6.75 -51.93 -0.35 0.02 16 30 H 0.09 1.74 6.07 -51.93 -0.32 1.43 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.78 8.00 -51.93 -0.42 0.36 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.12 1.55 8.14 -51.93 -0.42 1.12 16 37 H 0.04 0.57 6.76 -51.93 -0.35 0.22 16 38 H 0.08 1.22 7.91 -51.93 -0.41 0.81 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -28.94 305.76 -7.78 -36.72 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.77 Total: -2.26 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -1.43 Total: -15.14 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.24 Total: -36.03 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.08 Total: -4.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.94 -7.78 -36.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844438799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.559 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds