Wall clock time and date at job start Mon Mar 30 2020 07:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47199 * 2 1 4 4 C 1.53001 * 109.47269 * 239.99800 * 2 1 3 5 5 C 1.50699 * 109.47045 * 175.93497 * 4 2 1 6 6 H 1.08002 * 119.99947 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99691 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00137 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99894 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47100 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.46940 * 120.00272 * 9 7 5 12 12 H 1.48498 * 109.47634 * 240.00039 * 9 7 5 13 13 N 1.46903 * 109.47065 * 119.99700 * 2 1 3 14 14 C 1.46793 * 110.99737 * 53.33674 * 13 2 1 15 15 C 1.53051 * 110.05610 * 171.19121 * 14 13 2 16 16 C 1.53333 * 109.16732 * 61.96958 * 15 14 13 17 17 C 1.53234 * 108.67678 * 306.00322 * 16 15 14 18 18 C 1.52785 * 117.72608 * 266.01709 * 17 16 15 19 19 C 1.52756 * 117.77863 * 197.06955 * 17 16 15 20 20 F 1.39898 * 117.50608 * 215.16085 * 19 17 16 21 21 F 1.39899 * 117.50427 * 0.21507 * 19 17 16 22 22 C 1.47052 * 111.00057 * 289.12986 * 13 2 1 23 23 H 1.08997 * 109.47045 * 300.00295 * 1 2 3 24 24 H 1.09000 * 109.46851 * 60.00048 * 1 2 3 25 25 H 1.08996 * 109.47370 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47095 * 295.93627 * 4 2 1 27 27 H 1.08995 * 109.46681 * 55.93055 * 4 2 1 28 28 H 0.96999 * 119.99970 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.40129 * 291.23099 * 14 13 2 30 30 H 1.08995 * 109.40142 * 51.05719 * 14 13 2 31 31 H 1.09001 * 109.36934 * 302.16257 * 15 14 13 32 32 H 1.08996 * 109.69511 * 181.97322 * 15 14 13 33 33 H 1.09006 * 109.62826 * 186.20167 * 16 15 14 34 34 H 1.08999 * 109.62845 * 65.81417 * 16 15 14 35 35 H 1.08997 * 117.51055 * 359.69395 * 18 17 16 36 36 H 1.09004 * 117.50981 * 144.72968 * 18 17 16 37 37 H 1.09003 * 109.56414 * 62.35647 * 22 13 2 38 38 H 1.08997 * 109.56399 * 302.01023 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5437 -0.6346 -1.3006 6 1 4.0817 -0.1165 -0.5204 7 6 4.2325 -1.2168 -2.3435 8 7 3.5773 -1.8473 -3.2936 9 14 6.0963 -1.1088 -2.4075 10 1 6.5890 -0.3514 -1.2291 11 1 6.6722 -2.4776 -2.3919 12 1 6.5093 -0.4122 -3.6523 13 7 2.0197 -0.6924 1.1995 14 6 1.4235 -2.0288 1.3156 15 6 2.1055 -2.8120 2.4399 16 6 1.8799 -2.0831 3.7699 17 6 2.3473 -0.6316 3.6194 18 6 3.7765 -0.2975 4.0439 19 6 2.5942 0.1726 4.8945 20 9 2.2817 1.5360 4.8691 21 9 2.3808 -0.4730 6.1171 22 6 1.7712 0.1075 2.4081 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.7374 -1.7678 -1.2135 27 1 1.6184 -0.2513 -2.1376 28 1 4.0619 -2.2571 -4.0271 29 1 0.3607 -1.9331 1.5379 30 1 1.5497 -2.5646 0.3748 31 1 3.1746 -2.8778 2.2376 32 1 1.6826 -3.8148 2.4979 33 1 2.4529 -2.5725 4.5575 34 1 0.8197 -2.1021 4.0225 35 1 4.3879 -1.1097 4.4369 36 1 4.3109 0.4552 3.4642 37 1 0.6980 0.2447 2.5408 38 1 2.2555 1.0788 2.3089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844438799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:50 Heat of formation + Delta-G solvation = -91.307301 kcal Electronic energy + Delta-G solvation = -20526.854973 eV Core-core repulsion = 17232.874485 eV Total energy + Delta-G solvation = -3293.980488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.66133 -48.34088 -40.57371 -37.63278 -34.95582 -33.88023 -31.58370 -29.12303 -28.58095 -25.74183 -24.55180 -23.78465 -23.10665 -20.68865 -19.62986 -18.60714 -18.31589 -17.77345 -17.01449 -16.53440 -16.31581 -15.63708 -15.41315 -15.30399 -15.00417 -14.75344 -14.60504 -14.32666 -14.19155 -13.92662 -13.62367 -13.42151 -13.12970 -13.04805 -12.78489 -12.62670 -12.34375 -12.17744 -11.83060 -11.79218 -11.37409 -11.28033 -11.10926 -11.04455 -10.53675 -10.44349 -8.91100 -8.07022 -6.11026 1.42941 1.44619 1.56886 1.96875 2.17007 2.49833 3.09358 3.27954 3.29996 3.37507 3.67246 3.83845 4.11322 4.19457 4.24652 4.41410 4.45160 4.55031 4.58217 4.63977 4.69037 4.74696 4.85142 4.90086 4.95439 5.03160 5.07576 5.20682 5.22787 5.29824 5.47002 5.55076 5.72551 5.93329 6.33604 6.43793 6.52993 7.03157 7.54726 9.05279 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.022618 B = 0.006168 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.678684 B = 4538.204657 C = 4924.739599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.064 0.936 4 C 0.037 3.963 5 C -0.493 4.493 6 H 0.059 0.941 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.953 3.047 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.520 5.520 14 C 0.054 3.946 15 C -0.105 4.105 16 C -0.077 4.077 17 C -0.112 4.112 18 C -0.147 4.147 19 C 0.187 3.813 20 F -0.172 7.172 21 F -0.165 7.165 22 C 0.090 3.910 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.000 1.000 27 H -0.009 1.009 28 H 0.257 0.743 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.045 0.955 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.541 0.971 16.150 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.013 4.013 3 H 0.082 0.918 4 C -0.001 4.001 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.201 4.201 8 N -0.584 5.584 9 Si 0.780 3.220 10 H -0.187 1.187 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.244 5.244 14 C -0.073 4.073 15 C -0.143 4.143 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.184 4.184 19 C 0.150 3.850 20 F -0.152 7.152 21 F -0.146 7.146 22 C -0.037 4.037 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.018 0.982 27 H 0.009 0.991 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.156 0.844 36 H 0.141 0.859 37 H 0.063 0.937 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.019 0.856 15.993 16.297 hybrid contribution -0.065 0.285 -0.382 0.480 sum -3.084 1.141 15.611 15.953 Atomic orbital electron populations 1.22398 0.97308 1.01791 1.01876 1.21619 0.91982 0.97230 0.90491 0.91785 1.19055 0.95304 0.94444 0.91256 1.21505 0.93031 1.32337 1.06303 0.92236 1.25819 1.02633 0.95819 0.95782 1.70098 1.36878 1.38514 1.12884 0.85563 0.80996 0.77566 0.77879 1.18749 1.21046 1.21167 1.61929 1.59159 1.02476 1.00845 1.22051 0.95909 0.90131 0.99235 1.21529 1.01481 0.98520 0.92790 1.21220 1.02081 0.89876 0.98266 1.22875 0.99423 0.97333 0.91724 1.24484 0.91835 1.04236 0.97871 1.20375 1.08301 0.75648 0.80684 1.92981 1.94101 1.31600 1.96549 1.92982 1.95845 1.80154 1.45605 1.21603 0.98474 0.95878 0.87790 0.91866 0.92437 0.92756 0.98225 0.99079 0.93382 0.94463 0.92560 0.92008 0.89448 0.89461 0.90347 0.84374 0.85926 0.93705 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 8.44 71.98 0.61 -5.07 16 2 C 0.09 3.72 2.26 44.92 0.10 3.82 16 3 H 0.06 2.56 8.03 -2.38 -0.02 2.55 16 4 C 0.04 1.85 4.38 29.85 0.13 1.98 16 5 C -0.49 -27.24 8.81 25.60 0.23 -27.02 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -56.97 13.29 21.45 0.28 -56.69 16 9 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 10 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 13 N -0.52 -18.32 4.30 -870.45 -3.74 -22.06 16 14 C 0.05 1.77 4.35 86.34 0.38 2.14 16 15 C -0.11 -2.74 6.13 30.72 0.19 -2.55 16 16 C -0.08 -1.69 5.42 30.78 0.17 -1.52 16 17 C -0.11 -2.77 2.12 -52.21 -0.11 -2.88 16 18 C -0.15 -3.28 9.89 30.54 0.30 -2.98 16 19 C 0.19 4.53 5.15 30.53 0.16 4.69 16 20 F -0.17 -4.61 17.07 44.97 0.77 -3.85 16 21 F -0.17 -4.03 17.09 44.97 0.77 -3.26 16 22 C 0.09 2.62 4.64 86.32 0.40 3.02 16 23 H 0.06 1.76 6.77 -2.39 -0.02 1.74 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.05 1.75 6.52 -2.39 -0.02 1.73 16 26 H 0.00 -0.03 6.24 -2.39 -0.01 -0.04 16 27 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.04 1.10 6.75 -2.39 -0.02 1.08 16 30 H 0.06 2.21 6.07 -2.39 -0.01 2.19 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.09 1.63 8.00 -2.38 -0.02 1.62 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 37 H 0.04 1.24 6.76 -2.39 -0.02 1.22 16 38 H 0.07 2.20 7.91 -2.39 -0.02 2.18 16 Total: -1.00 -62.13 305.76 4.16 -57.97 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 1.04 Total: 7.37 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 3.01 Total: -26.19 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -3.45 Total: -78.75 kcal Atomic # 9 Polarization: -8.64 SS G_CDS: 1.54 Total: -7.10 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -62.13 4.16 -57.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844438799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.334 kcal (2) G-P(sol) polarization free energy of solvation -62.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds