Wall clock time and date at job start Mon Mar 30 2020 07:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47178 * 2 1 4 4 C 1.53002 * 109.47050 * 239.99335 * 2 1 3 5 5 C 1.50707 * 109.46706 * 176.07721 * 4 2 1 6 6 H 1.07989 * 120.00168 * 3.39739 * 5 4 2 7 7 C 1.37879 * 119.99529 * 183.39439 * 5 4 2 8 8 N 1.31516 * 120.00004 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99999 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46938 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47322 * 119.99824 * 9 7 5 12 12 H 1.48497 * 109.47231 * 240.00133 * 9 7 5 13 13 N 1.46906 * 109.46971 * 119.99569 * 2 1 3 14 14 C 1.46780 * 110.99836 * 290.38669 * 13 2 1 15 15 C 1.53007 * 109.87663 * 188.90175 * 14 13 2 16 16 C 1.53327 * 109.20558 * 297.73857 * 15 14 13 17 17 C 1.53238 * 108.49800 * 54.29605 * 16 15 14 18 18 C 1.52788 * 117.72198 * 93.88475 * 17 16 15 19 19 C 1.52763 * 117.77440 * 162.82160 * 17 16 15 20 20 F 1.39910 * 117.50039 * 359.79193 * 19 17 16 21 21 F 1.39894 * 117.50976 * 144.84141 * 19 17 16 22 22 C 1.47053 * 110.99696 * 54.60791 * 13 2 1 23 23 H 1.08997 * 109.47006 * 60.00679 * 1 2 3 24 24 H 1.08994 * 109.47313 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47033 * 300.00630 * 1 2 3 26 26 H 1.08992 * 109.47149 * 296.07807 * 4 2 1 27 27 H 1.09001 * 109.46951 * 56.08292 * 4 2 1 28 28 H 0.97000 * 119.99857 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.40418 * 68.78154 * 14 13 2 30 30 H 1.09000 * 109.40915 * 309.02599 * 14 13 2 31 31 H 1.09004 * 109.51593 * 177.82009 * 15 14 13 32 32 H 1.09002 * 109.55695 * 57.68421 * 15 14 13 33 33 H 1.09000 * 109.63159 * 294.59296 * 16 15 14 34 34 H 1.09000 * 109.63231 * 173.99582 * 16 15 14 35 35 H 1.09003 * 117.50212 * 215.23733 * 18 17 16 36 36 H 1.08995 * 117.50675 * 0.25886 * 18 17 16 37 37 H 1.08995 * 109.56980 * 57.98222 * 22 13 2 38 38 H 1.08995 * 109.56887 * 297.62036 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5439 -0.6377 -1.2987 6 1 4.0856 -0.1698 -0.4901 7 6 4.2282 -1.1587 -2.3764 8 7 3.5684 -1.7281 -3.3613 9 14 6.0923 -1.0557 -2.4375 10 1 6.5907 -0.3735 -1.2162 11 1 6.6618 -2.4254 -2.5060 12 1 6.5065 -0.2868 -3.6385 13 7 2.0196 -0.6924 1.1995 14 6 1.7449 0.0926 2.4090 15 6 2.4540 -0.5368 3.6099 16 6 1.9009 -1.9483 3.8394 17 6 2.0287 -2.7389 2.5329 18 6 3.2773 -3.5986 2.3417 19 6 1.9238 -4.2611 2.6088 20 9 1.7219 -4.8326 3.8698 21 9 1.3051 -4.9201 1.5411 22 6 1.4456 -2.0426 1.2998 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.7352 -1.7673 -1.2146 27 1 1.6204 -0.2498 -2.1378 28 1 4.0498 -2.0943 -4.1196 29 1 0.6705 0.1116 2.5920 30 1 2.1053 1.1117 2.2690 31 1 2.2779 0.0719 4.4968 32 1 3.5246 -0.5928 3.4133 33 1 0.8520 -1.8879 4.1297 34 1 2.4733 -2.4429 4.6242 35 1 3.6855 -3.6761 1.3340 36 1 4.0106 -3.6076 3.1480 37 1 1.6964 -2.6132 0.4057 38 1 0.3624 -1.9723 1.3983 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844438800.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:53 Heat of formation + Delta-G solvation = -75.070273 kcal Electronic energy + Delta-G solvation = -20739.762802 eV Core-core repulsion = 17446.486404 eV Total energy + Delta-G solvation = -3293.276398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.43876 -47.10664 -39.30207 -36.16540 -33.50538 -32.26686 -29.72116 -27.68906 -27.24269 -24.35468 -23.02931 -22.44531 -21.41578 -19.54355 -18.33795 -17.35908 -16.69372 -16.16459 -15.76305 -14.73846 -14.61622 -14.44569 -14.19398 -13.78066 -13.68548 -13.51576 -13.36464 -12.99445 -12.92205 -12.44940 -12.09650 -12.05506 -11.70847 -11.40066 -11.16773 -10.90747 -10.84582 -10.58190 -10.49400 -10.25932 -10.09761 -10.00886 -9.40359 -9.17956 -8.97602 -8.27712 -7.52928 -5.89943 -3.87962 3.17417 3.35700 3.36487 3.44553 3.49258 4.37387 4.47263 4.54606 4.58469 4.84678 5.00114 5.19017 5.31687 5.46824 5.53366 5.72363 5.73275 5.77644 5.81695 5.82683 5.95084 5.96143 6.01693 6.04240 6.12395 6.23888 6.33624 6.47848 6.54891 6.67749 6.94310 7.49520 7.64702 7.85377 7.97829 8.11157 8.56872 9.19196 9.74020 11.21960 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.007482 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.476738 B = 3741.531278 C = 4254.467760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.087 3.913 3 H 0.073 0.927 4 C 0.028 3.972 5 C -0.490 4.490 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.902 5.902 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.505 5.505 14 C 0.050 3.950 15 C -0.111 4.111 16 C -0.083 4.083 17 C -0.107 4.107 18 C -0.153 4.153 19 C 0.185 3.815 20 F -0.168 7.168 21 F -0.160 7.160 22 C 0.091 3.909 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.040 0.960 26 H 0.016 0.984 27 H 0.021 0.979 28 H 0.257 0.743 29 H 0.025 0.975 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -0.314 13.723 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.020 4.020 3 H 0.091 0.909 4 C -0.009 4.009 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.149 4.149 8 N -0.543 5.543 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.228 5.228 14 C -0.078 4.078 15 C -0.148 4.148 16 C -0.121 4.121 17 C -0.108 4.108 18 C -0.191 4.191 19 C 0.148 3.852 20 F -0.149 7.149 21 F -0.141 7.141 22 C -0.037 4.037 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.565 -0.468 13.519 13.989 hybrid contribution 0.004 -0.257 -0.070 0.267 sum -3.561 -0.726 13.449 13.931 Atomic orbital electron populations 1.22540 0.99749 1.01381 1.00816 1.21952 0.90071 0.98411 0.91581 0.90920 1.19219 0.96527 0.95178 0.89933 1.21211 0.91564 1.36132 1.03934 0.91911 1.25016 0.97928 0.96000 0.95969 1.69974 1.35051 1.40081 1.09230 0.86606 0.86569 0.77491 0.77739 1.19757 1.21359 1.21425 1.62037 1.58461 1.00839 1.01482 1.22076 0.97218 0.97645 0.90896 1.21553 1.01516 0.94457 0.97305 1.21211 1.01535 0.95840 0.93493 1.22888 1.00047 0.88526 0.99363 1.24388 0.90696 0.97524 1.06443 1.20347 1.01589 0.90436 0.72801 1.92970 1.96038 1.86610 1.39251 1.93017 1.84236 1.82771 1.54057 1.21673 0.95478 0.91341 0.95235 0.92380 0.92851 0.94099 0.96590 0.96028 0.93368 0.95654 0.90990 0.91673 0.90615 0.91359 0.91265 0.85154 0.86614 0.88420 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.11 8.46 37.16 0.31 -2.80 16 2 C 0.09 1.71 2.27 -67.71 -0.15 1.56 16 3 H 0.07 1.44 7.95 -51.93 -0.41 1.03 16 4 C 0.03 0.70 4.34 -27.88 -0.12 0.58 16 5 C -0.49 -13.30 8.81 -34.44 -0.30 -13.60 16 6 H 0.06 1.70 7.73 -52.49 -0.41 1.30 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 N -0.50 -9.04 4.28 -226.52 -0.97 -10.02 16 14 C 0.05 0.73 4.97 -3.89 -0.02 0.71 16 15 C -0.11 -1.37 6.11 -26.56 -0.16 -1.53 16 16 C -0.08 -1.04 5.43 -26.44 -0.14 -1.18 16 17 C -0.11 -1.59 2.11 -154.54 -0.33 -1.92 16 18 C -0.15 -2.21 9.89 -26.82 -0.27 -2.48 16 19 C 0.19 2.83 5.15 -26.83 -0.14 2.69 16 20 F -0.17 -2.49 17.09 2.25 0.04 -2.45 16 21 F -0.16 -2.75 17.07 2.25 0.04 -2.71 16 22 C 0.09 1.57 4.05 -3.66 -0.01 1.55 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.90 6.38 -51.93 -0.33 0.57 16 25 H 0.04 0.60 6.87 -51.93 -0.36 0.24 16 26 H 0.02 0.42 6.32 -51.93 -0.33 0.09 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.03 0.35 6.99 -51.93 -0.36 -0.01 16 30 H 0.07 1.02 7.95 -51.93 -0.41 0.61 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.78 8.00 -51.93 -0.42 0.36 16 35 H 0.13 2.09 8.14 -51.93 -0.42 1.66 16 36 H 0.12 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.10 1.98 6.11 -51.93 -0.32 1.67 16 38 H 0.04 0.63 6.37 -51.93 -0.33 0.30 16 LS Contribution 305.63 15.07 4.61 4.61 Total: -1.00 -29.07 305.63 -7.77 -36.84 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.77 Total: -1.71 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.43 Total: -15.10 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.23 Total: -36.10 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.08 Total: -5.17 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.07 -7.77 -36.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844438800.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.230 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds