Wall clock time and date at job start Mon Mar 30 2020 07:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47178 * 2 1 4 4 C 1.53002 * 109.47050 * 239.99335 * 2 1 3 5 5 C 1.50707 * 109.46706 * 176.07721 * 4 2 1 6 6 H 1.07989 * 120.00168 * 3.39739 * 5 4 2 7 7 C 1.37879 * 119.99529 * 183.39439 * 5 4 2 8 8 N 1.31516 * 120.00004 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99999 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46938 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47322 * 119.99824 * 9 7 5 12 12 H 1.48497 * 109.47231 * 240.00133 * 9 7 5 13 13 N 1.46906 * 109.46971 * 119.99569 * 2 1 3 14 14 C 1.46780 * 110.99836 * 290.38669 * 13 2 1 15 15 C 1.53007 * 109.87663 * 188.90175 * 14 13 2 16 16 C 1.53327 * 109.20558 * 297.73857 * 15 14 13 17 17 C 1.53238 * 108.49800 * 54.29605 * 16 15 14 18 18 C 1.52788 * 117.72198 * 93.88475 * 17 16 15 19 19 C 1.52763 * 117.77440 * 162.82160 * 17 16 15 20 20 F 1.39910 * 117.50039 * 359.79193 * 19 17 16 21 21 F 1.39894 * 117.50976 * 144.84141 * 19 17 16 22 22 C 1.47053 * 110.99696 * 54.60791 * 13 2 1 23 23 H 1.08997 * 109.47006 * 60.00679 * 1 2 3 24 24 H 1.08994 * 109.47313 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47033 * 300.00630 * 1 2 3 26 26 H 1.08992 * 109.47149 * 296.07807 * 4 2 1 27 27 H 1.09001 * 109.46951 * 56.08292 * 4 2 1 28 28 H 0.97000 * 119.99857 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.40418 * 68.78154 * 14 13 2 30 30 H 1.09000 * 109.40915 * 309.02599 * 14 13 2 31 31 H 1.09004 * 109.51593 * 177.82009 * 15 14 13 32 32 H 1.09002 * 109.55695 * 57.68421 * 15 14 13 33 33 H 1.09000 * 109.63159 * 294.59296 * 16 15 14 34 34 H 1.09000 * 109.63231 * 173.99582 * 16 15 14 35 35 H 1.09003 * 117.50212 * 215.23733 * 18 17 16 36 36 H 1.08995 * 117.50675 * 0.25886 * 18 17 16 37 37 H 1.08995 * 109.56980 * 57.98222 * 22 13 2 38 38 H 1.08995 * 109.56887 * 297.62036 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5439 -0.6377 -1.2987 6 1 4.0856 -0.1698 -0.4901 7 6 4.2282 -1.1587 -2.3764 8 7 3.5684 -1.7281 -3.3613 9 14 6.0923 -1.0557 -2.4375 10 1 6.5907 -0.3735 -1.2162 11 1 6.6618 -2.4254 -2.5060 12 1 6.5065 -0.2868 -3.6385 13 7 2.0196 -0.6924 1.1995 14 6 1.7449 0.0926 2.4090 15 6 2.4540 -0.5368 3.6099 16 6 1.9009 -1.9483 3.8394 17 6 2.0287 -2.7389 2.5329 18 6 3.2773 -3.5986 2.3417 19 6 1.9238 -4.2611 2.6088 20 9 1.7219 -4.8326 3.8698 21 9 1.3051 -4.9201 1.5411 22 6 1.4456 -2.0426 1.2998 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.7352 -1.7673 -1.2146 27 1 1.6204 -0.2498 -2.1378 28 1 4.0498 -2.0943 -4.1196 29 1 0.6705 0.1116 2.5920 30 1 2.1053 1.1117 2.2690 31 1 2.2779 0.0719 4.4968 32 1 3.5246 -0.5928 3.4133 33 1 0.8520 -1.8879 4.1297 34 1 2.4733 -2.4429 4.6242 35 1 3.6855 -3.6761 1.3340 36 1 4.0106 -3.6076 3.1480 37 1 1.6964 -2.6132 0.4057 38 1 0.3624 -1.9723 1.3983 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844438800.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:52 Heat of formation + Delta-G solvation = -91.514242 kcal Electronic energy + Delta-G solvation = -20740.475866 eV Core-core repulsion = 17446.486404 eV Total energy + Delta-G solvation = -3293.989462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.67882 -48.35911 -40.58764 -37.54112 -35.11590 -33.94742 -31.20189 -29.26493 -28.71222 -25.76016 -24.80107 -23.67238 -22.63403 -21.02456 -19.58929 -18.62037 -18.30032 -17.96117 -17.00717 -16.51590 -15.97775 -15.85638 -15.48512 -15.06562 -15.02246 -14.75982 -14.63133 -14.45628 -14.21903 -13.83214 -13.65818 -13.56184 -13.12192 -13.04485 -12.71851 -12.61050 -12.33118 -12.02544 -11.93602 -11.76539 -11.56440 -11.29408 -11.04022 -10.90895 -10.60829 -10.45831 -8.91131 -8.07651 -6.12237 1.42252 1.43861 1.56408 1.96099 2.16765 2.48967 3.09800 3.26991 3.30649 3.38190 3.65740 3.83990 4.13297 4.20613 4.24102 4.40834 4.44617 4.54678 4.59810 4.65910 4.70286 4.78245 4.86321 4.92794 4.95331 5.05787 5.09674 5.21176 5.23232 5.26983 5.48513 5.51957 5.72976 5.92010 6.31340 6.43511 6.54930 7.02942 7.53897 9.04641 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.007482 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.476738 B = 3741.531278 C = 4254.467760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.095 3.905 3 H 0.072 0.928 4 C 0.034 3.966 5 C -0.493 4.493 6 H 0.063 0.937 7 C -0.007 4.007 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.261 1.261 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.522 5.522 14 C 0.047 3.953 15 C -0.104 4.104 16 C -0.078 4.078 17 C -0.105 4.105 18 C -0.149 4.149 19 C 0.179 3.821 20 F -0.162 7.162 21 F -0.178 7.178 22 C 0.096 3.904 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.069 0.931 26 H -0.009 1.009 27 H -0.008 1.008 28 H 0.257 0.743 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.146 0.854 37 H 0.055 0.945 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 0.654 16.413 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.013 4.013 3 H 0.090 0.910 4 C -0.003 4.003 5 C -0.531 4.531 6 H 0.081 0.919 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.780 3.220 10 H -0.185 1.185 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.245 5.245 14 C -0.081 4.081 15 C -0.142 4.142 16 C -0.116 4.116 17 C -0.106 4.106 18 C -0.187 4.187 19 C 0.142 3.858 20 F -0.143 7.143 21 F -0.158 7.158 22 C -0.032 4.032 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.009 0.991 27 H 0.010 0.990 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.164 0.836 37 H 0.074 0.926 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.009 0.510 16.231 16.515 hybrid contribution -0.207 -0.568 -0.922 1.102 sum -3.216 -0.058 15.309 15.643 Atomic orbital electron populations 1.22406 0.97489 1.01388 1.02192 1.21640 0.91859 0.97424 0.90342 0.91004 1.19069 0.95526 0.94029 0.91645 1.21518 0.92875 1.35164 1.03564 0.91867 1.25862 1.02729 0.95860 0.95770 1.70113 1.36925 1.41407 1.09985 0.85551 0.80874 0.77462 0.78071 1.18475 1.21200 1.21131 1.61925 1.59024 1.01284 1.02292 1.22214 0.98424 0.97485 0.89940 1.21547 1.00521 0.94678 0.97415 1.21282 1.02708 0.95470 0.92097 1.22940 0.99751 0.88244 0.99708 1.24429 0.91025 0.96983 1.06259 1.20453 1.02118 0.90664 0.72586 1.92977 1.96054 1.86566 1.38655 1.92981 1.84616 1.83176 1.55072 1.21467 0.95897 0.91003 0.94815 0.92445 0.93514 0.91219 0.99127 0.99014 0.93444 0.94385 0.90555 0.88347 0.91561 0.90222 0.89306 0.87478 0.83622 0.92644 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.75 8.46 71.98 0.61 -5.14 16 2 C 0.10 3.74 2.27 44.91 0.10 3.84 16 3 H 0.07 2.81 7.95 -2.39 -0.02 2.79 16 4 C 0.03 1.77 4.34 29.85 0.13 1.90 16 5 C -0.49 -27.31 8.81 25.60 0.23 -27.09 16 6 H 0.06 3.44 7.73 -2.92 -0.02 3.41 16 7 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 8 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 9 Si 0.95 44.88 29.54 68.60 2.03 46.90 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 13 N -0.52 -18.24 4.28 -870.57 -3.73 -21.97 16 14 C 0.05 1.22 4.97 86.33 0.43 1.65 16 15 C -0.10 -2.17 6.11 30.71 0.19 -1.98 16 16 C -0.08 -1.66 5.43 30.78 0.17 -1.49 16 17 C -0.10 -2.97 2.11 -52.20 -0.11 -3.08 16 18 C -0.15 -4.18 9.89 30.54 0.30 -3.88 16 19 C 0.18 5.30 5.15 30.53 0.16 5.46 16 20 F -0.16 -4.47 17.09 44.97 0.77 -3.70 16 21 F -0.18 -6.24 17.07 44.97 0.77 -5.47 16 22 C 0.10 3.33 4.05 86.32 0.35 3.68 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.05 1.57 6.38 -2.39 -0.02 1.56 16 25 H 0.07 1.88 6.87 -2.39 -0.02 1.86 16 26 H -0.01 -0.53 6.32 -2.39 -0.02 -0.55 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.04 0.91 6.99 -2.39 -0.02 0.89 16 30 H 0.08 1.93 7.95 -2.39 -0.02 1.91 16 31 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.59 8.00 -2.39 -0.02 1.57 16 35 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.15 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.06 2.38 6.11 -2.39 -0.01 2.36 16 38 H 0.04 1.40 6.37 -2.39 -0.02 1.39 16 Total: -1.00 -64.11 305.63 4.17 -59.94 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.04 Total: 7.83 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 3.01 Total: -26.04 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -3.44 Total: -79.46 kcal Atomic # 9 Polarization: -10.71 SS G_CDS: 1.54 Total: -9.18 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.11 4.17 -59.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844438800.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.572 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds