Wall clock time and date at job start Mon Mar 30 2020 07:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46655 * 2 1 4 4 C 1.53001 * 109.46888 * 119.99857 * 2 1 3 5 5 C 1.50695 * 109.46812 * 182.74797 * 4 2 1 6 6 H 1.08002 * 120.00344 * 5.23346 * 5 4 2 7 7 C 1.37884 * 119.99991 * 185.22886 * 5 4 2 8 8 N 1.31515 * 119.99665 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00173 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47012 * 60.00097 * 9 7 5 11 11 H 1.48501 * 109.46907 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47206 * 300.00205 * 9 7 5 13 13 N 1.46891 * 109.47189 * 240.00396 * 2 1 3 14 14 C 1.46781 * 111.00760 * 70.22790 * 13 2 1 15 15 C 1.52988 * 109.90391 * 171.10763 * 14 13 2 16 16 C 1.53331 * 109.19786 * 62.25734 * 15 14 13 17 17 C 1.53228 * 108.51924 * 305.73670 * 16 15 14 18 18 C 1.52794 * 117.72203 * 266.06477 * 17 16 15 19 19 C 1.52866 * 117.76441 * 197.15183 * 17 16 15 20 20 F 1.39903 * 117.49848 * 0.21328 * 19 17 16 21 21 F 1.39904 * 117.52678 * 215.13735 * 19 17 16 22 22 C 1.47042 * 111.00160 * 306.01194 * 13 2 1 23 23 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47331 * 300.00238 * 1 2 3 25 25 H 1.09002 * 109.46955 * 60.00113 * 1 2 3 26 26 H 1.08999 * 109.47002 * 302.75207 * 4 2 1 27 27 H 1.08997 * 109.46691 * 62.74996 * 4 2 1 28 28 H 0.97000 * 120.00109 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.39819 * 50.96928 * 14 13 2 30 30 H 1.09003 * 109.32497 * 291.19691 * 14 13 2 31 31 H 1.09002 * 109.51632 * 302.34465 * 15 14 13 32 32 H 1.09000 * 109.51827 * 182.17644 * 15 14 13 33 33 H 1.08998 * 109.63139 * 186.02458 * 16 15 14 34 34 H 1.09004 * 109.78740 * 65.53889 * 16 15 14 35 35 H 1.08998 * 117.50385 * 144.76358 * 18 17 16 36 36 H 1.09004 * 117.50479 * 359.74124 * 18 17 16 37 37 H 1.09006 * 109.56335 * 62.33217 * 22 13 2 38 38 H 1.09007 * 109.56549 * 301.99453 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5454 -0.6625 1.2838 6 1 4.0807 -0.0898 0.5409 7 6 4.2395 -1.3398 2.2639 8 7 3.5877 -2.0375 3.1684 9 14 6.1056 -1.2676 2.3063 10 1 6.5429 0.1424 2.4665 11 1 6.6063 -2.0744 3.4481 12 1 6.6511 -1.8140 1.0378 13 7 2.0197 -0.6924 -1.1994 14 6 1.7581 0.0991 -2.4075 15 6 2.4673 -0.5319 -3.6073 16 6 1.9029 -1.9376 -3.8445 17 6 2.0166 -2.7342 -2.5405 18 6 3.2557 -3.6068 -2.3464 19 6 1.8976 -4.2560 -2.6230 20 9 1.6969 -4.8207 -3.8872 21 9 1.2676 -4.9138 -1.5610 22 6 1.4344 -2.0369 -1.3076 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6369 -0.2366 2.1385 27 1 1.7174 -1.7621 1.2249 28 1 4.0759 -2.5143 3.8577 29 1 2.1267 1.1145 -2.2619 30 1 0.6847 0.1271 -2.5950 31 1 3.5363 -0.5981 -3.4049 32 1 2.3009 0.0816 -4.4927 33 1 2.4748 -2.4345 -4.6282 34 1 0.8564 -1.8697 -4.1421 35 1 3.6582 -3.6920 -1.3370 36 1 3.9929 -3.6200 -3.1492 37 1 0.3522 -1.9567 -1.4106 38 1 1.6760 -2.6132 -0.4143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844438802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:57 Heat of formation + Delta-G solvation = -74.864949 kcal Electronic energy + Delta-G solvation = -20784.039375 eV Core-core repulsion = 17490.771881 eV Total energy + Delta-G solvation = -3293.267494 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.41760 -47.08581 -39.28395 -36.14810 -33.49439 -32.25474 -29.71857 -27.66157 -27.24567 -24.34525 -23.01179 -22.42430 -21.40824 -19.53163 -18.32453 -17.33883 -16.67790 -16.15800 -15.74282 -14.73030 -14.58716 -14.44908 -14.17926 -13.76248 -13.67313 -13.51212 -13.34612 -12.97868 -12.90388 -12.43238 -12.08907 -12.02519 -11.71511 -11.39606 -11.14484 -10.89135 -10.80754 -10.58698 -10.51952 -10.22216 -10.08808 -10.04491 -9.39050 -9.16451 -8.99505 -8.26339 -7.50749 -5.88922 -3.86840 3.18811 3.38103 3.39486 3.44114 3.46827 4.39297 4.49464 4.55198 4.59930 4.86520 5.01789 5.20298 5.33193 5.47724 5.54836 5.72272 5.74314 5.79817 5.82500 5.84236 5.96194 5.97293 6.02253 6.04842 6.15585 6.24871 6.34624 6.49439 6.55398 6.67970 6.95264 7.49541 7.65095 7.86160 7.98804 8.11411 8.56688 9.18388 9.74456 11.22884 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.007762 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.734823 B = 3606.409918 C = 4150.344713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.088 3.912 3 H 0.071 0.929 4 C 0.029 3.971 5 C -0.489 4.489 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.504 5.504 14 C 0.050 3.950 15 C -0.110 4.110 16 C -0.083 4.083 17 C -0.106 4.106 18 C -0.152 4.152 19 C 0.185 3.815 20 F -0.168 7.168 21 F -0.160 7.160 22 C 0.091 3.909 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.016 0.984 27 H 0.022 0.978 28 H 0.258 0.742 29 H 0.071 0.929 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.130 0.870 36 H 0.115 0.885 37 H 0.037 0.963 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 0.207 -13.333 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.020 4.020 3 H 0.089 0.911 4 C -0.008 4.008 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.227 5.227 14 C -0.078 4.078 15 C -0.148 4.148 16 C -0.121 4.121 17 C -0.108 4.108 18 C -0.190 4.190 19 C 0.148 3.852 20 F -0.149 7.149 21 F -0.141 7.141 22 C -0.037 4.037 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.055 0.945 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.610 0.018 -13.132 13.619 hybrid contribution 0.020 -0.264 0.008 0.265 sum -3.590 -0.247 -13.124 13.608 Atomic orbital electron populations 1.22542 0.99753 1.01416 1.00782 1.21937 0.90063 0.98287 0.91721 0.91055 1.19208 0.96448 0.95504 0.89676 1.21087 0.91372 1.29205 1.11078 0.92243 1.24991 0.97889 0.95926 0.95992 1.69951 1.35199 1.32904 1.16301 0.86723 0.86549 0.77807 0.77241 1.20553 1.21712 1.20368 1.62015 1.58310 1.00918 1.01429 1.22076 0.97241 0.97562 0.90958 1.21546 1.01484 0.94490 0.97287 1.21205 1.01515 0.95841 0.93520 1.22897 1.00086 0.88467 0.99331 1.24391 0.90653 0.97543 1.06426 1.20370 1.01333 0.90700 0.72814 1.92966 1.96056 1.86867 1.38998 1.93020 1.83754 1.82811 1.54481 1.21666 0.95317 0.91417 0.95261 0.92800 0.92417 0.94110 0.96630 0.95966 0.93258 0.91014 0.95698 0.90598 0.91677 0.91301 0.91374 0.85136 0.86653 0.94477 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.11 8.45 37.16 0.31 -2.80 16 2 C 0.09 1.71 2.28 -67.71 -0.15 1.56 16 3 H 0.07 1.41 7.94 -51.93 -0.41 0.99 16 4 C 0.03 0.71 4.34 -27.88 -0.12 0.59 16 5 C -0.49 -13.26 8.78 -34.44 -0.30 -13.57 16 6 H 0.06 1.61 7.75 -52.49 -0.41 1.20 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.50 -9.09 4.26 -226.54 -0.96 -10.06 16 14 C 0.05 0.73 4.99 -3.90 -0.02 0.71 16 15 C -0.11 -1.38 6.12 -26.57 -0.16 -1.54 16 16 C -0.08 -1.05 5.43 -26.44 -0.14 -1.19 16 17 C -0.11 -1.61 2.12 -154.49 -0.33 -1.94 16 18 C -0.15 -2.27 9.89 -26.81 -0.27 -2.53 16 19 C 0.18 2.87 5.15 -26.77 -0.14 2.74 16 20 F -0.17 -2.53 17.09 2.25 0.04 -2.49 16 21 F -0.16 -2.80 17.07 2.25 0.04 -2.76 16 22 C 0.09 1.60 4.04 -3.67 -0.01 1.59 16 23 H 0.05 0.91 6.38 -51.93 -0.33 0.58 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.60 6.89 -51.93 -0.36 0.24 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.59 6.39 -51.93 -0.33 0.25 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 30 H 0.02 0.35 7.01 -51.93 -0.36 -0.02 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.79 8.00 -51.93 -0.42 0.37 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 36 H 0.12 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.04 0.63 6.36 -51.93 -0.33 0.30 16 38 H 0.10 2.03 6.16 -51.93 -0.32 1.71 16 LS Contribution 305.73 15.07 4.61 4.61 Total: -1.00 -28.94 305.73 -7.77 -36.71 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.78 Total: -1.55 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.43 Total: -15.05 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.23 Total: -36.10 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.08 Total: -5.25 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.94 -7.77 -36.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844438802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.154 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds