Wall clock time and date at job start Mon Mar 30 2020 07:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46655 * 2 1 4 4 C 1.53001 * 109.46888 * 119.99857 * 2 1 3 5 5 C 1.50695 * 109.46812 * 182.74797 * 4 2 1 6 6 H 1.08002 * 120.00344 * 5.23346 * 5 4 2 7 7 C 1.37884 * 119.99991 * 185.22886 * 5 4 2 8 8 N 1.31515 * 119.99665 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00173 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47012 * 60.00097 * 9 7 5 11 11 H 1.48501 * 109.46907 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47206 * 300.00205 * 9 7 5 13 13 N 1.46891 * 109.47189 * 240.00396 * 2 1 3 14 14 C 1.46781 * 111.00760 * 70.22790 * 13 2 1 15 15 C 1.52988 * 109.90391 * 171.10763 * 14 13 2 16 16 C 1.53331 * 109.19786 * 62.25734 * 15 14 13 17 17 C 1.53228 * 108.51924 * 305.73670 * 16 15 14 18 18 C 1.52794 * 117.72203 * 266.06477 * 17 16 15 19 19 C 1.52866 * 117.76441 * 197.15183 * 17 16 15 20 20 F 1.39903 * 117.49848 * 0.21328 * 19 17 16 21 21 F 1.39904 * 117.52678 * 215.13735 * 19 17 16 22 22 C 1.47042 * 111.00160 * 306.01194 * 13 2 1 23 23 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47331 * 300.00238 * 1 2 3 25 25 H 1.09002 * 109.46955 * 60.00113 * 1 2 3 26 26 H 1.08999 * 109.47002 * 302.75207 * 4 2 1 27 27 H 1.08997 * 109.46691 * 62.74996 * 4 2 1 28 28 H 0.97000 * 120.00109 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.39819 * 50.96928 * 14 13 2 30 30 H 1.09003 * 109.32497 * 291.19691 * 14 13 2 31 31 H 1.09002 * 109.51632 * 302.34465 * 15 14 13 32 32 H 1.09000 * 109.51827 * 182.17644 * 15 14 13 33 33 H 1.08998 * 109.63139 * 186.02458 * 16 15 14 34 34 H 1.09004 * 109.78740 * 65.53889 * 16 15 14 35 35 H 1.08998 * 117.50385 * 144.76358 * 18 17 16 36 36 H 1.09004 * 117.50479 * 359.74124 * 18 17 16 37 37 H 1.09006 * 109.56335 * 62.33217 * 22 13 2 38 38 H 1.09007 * 109.56549 * 301.99453 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5454 -0.6625 1.2838 6 1 4.0807 -0.0898 0.5409 7 6 4.2395 -1.3398 2.2639 8 7 3.5877 -2.0375 3.1684 9 14 6.1056 -1.2676 2.3063 10 1 6.5429 0.1424 2.4665 11 1 6.6063 -2.0744 3.4481 12 1 6.6511 -1.8140 1.0378 13 7 2.0197 -0.6924 -1.1994 14 6 1.7581 0.0991 -2.4075 15 6 2.4673 -0.5319 -3.6073 16 6 1.9029 -1.9376 -3.8445 17 6 2.0166 -2.7342 -2.5405 18 6 3.2557 -3.6068 -2.3464 19 6 1.8976 -4.2560 -2.6230 20 9 1.6969 -4.8207 -3.8872 21 9 1.2676 -4.9138 -1.5610 22 6 1.4344 -2.0369 -1.3076 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6369 -0.2366 2.1385 27 1 1.7174 -1.7621 1.2249 28 1 4.0759 -2.5143 3.8577 29 1 2.1267 1.1145 -2.2619 30 1 0.6847 0.1271 -2.5950 31 1 3.5363 -0.5981 -3.4049 32 1 2.3009 0.0816 -4.4927 33 1 2.4748 -2.4345 -4.6282 34 1 0.8564 -1.8697 -4.1421 35 1 3.6582 -3.6920 -1.3370 36 1 3.9929 -3.6200 -3.1492 37 1 0.3522 -1.9567 -1.4106 38 1 1.6760 -2.6132 -0.4143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844438802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:57 Heat of formation + Delta-G solvation = -91.186438 kcal Electronic energy + Delta-G solvation = -20784.747128 eV Core-core repulsion = 17490.771881 eV Total energy + Delta-G solvation = -3293.975247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.68266 -48.36376 -40.58273 -37.53766 -35.11023 -33.94096 -31.20663 -29.24561 -28.72172 -25.75833 -24.78944 -23.67686 -22.63947 -21.02183 -19.58843 -18.62419 -18.29234 -17.96373 -17.01219 -16.50742 -15.97857 -15.85622 -15.48279 -15.06682 -15.02767 -14.76143 -14.63217 -14.44273 -14.21918 -13.83015 -13.67292 -13.55343 -13.12976 -13.00319 -12.71766 -12.54628 -12.39079 -12.02459 -11.98382 -11.76031 -11.55204 -11.30020 -11.06547 -10.89958 -10.60552 -10.43966 -8.89612 -8.06463 -6.10922 1.43852 1.45857 1.53222 1.95094 2.16263 2.49581 3.09906 3.27910 3.30260 3.38374 3.65278 3.83946 4.13379 4.20234 4.24244 4.40754 4.44541 4.55089 4.59995 4.65063 4.70418 4.78377 4.86174 4.92585 4.95134 5.06027 5.09682 5.21157 5.23958 5.27533 5.48745 5.51577 5.72434 5.91754 6.31748 6.43951 6.55860 7.02667 7.54563 9.05358 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.007762 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.734823 B = 3606.409918 C = 4150.344713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.095 3.905 3 H 0.072 0.928 4 C 0.034 3.966 5 C -0.492 4.492 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.941 5.941 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.292 1.292 12 H -0.268 1.268 13 N -0.521 5.521 14 C 0.047 3.953 15 C -0.104 4.104 16 C -0.078 4.078 17 C -0.104 4.104 18 C -0.150 4.150 19 C 0.179 3.821 20 F -0.162 7.162 21 F -0.178 7.178 22 C 0.097 3.903 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.069 0.931 26 H -0.012 1.012 27 H -0.006 1.006 28 H 0.257 0.743 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.145 0.855 37 H 0.043 0.957 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 1.299 -16.030 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.013 4.013 3 H 0.090 0.910 4 C -0.003 4.003 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.584 5.584 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.218 1.218 12 H -0.193 1.193 13 N -0.245 5.245 14 C -0.081 4.081 15 C -0.141 4.141 16 C -0.116 4.116 17 C -0.105 4.105 18 C -0.188 4.188 19 C 0.142 3.858 20 F -0.142 7.142 21 F -0.158 7.158 22 C -0.031 4.031 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.006 0.994 27 H 0.013 0.987 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.163 0.837 37 H 0.061 0.939 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.087 1.123 -15.852 16.188 hybrid contribution -0.180 -0.607 0.867 1.073 sum -3.267 0.516 -14.985 15.346 Atomic orbital electron populations 1.22408 0.97483 1.01366 1.02222 1.21637 0.91864 0.97371 0.90406 0.90954 1.19064 0.95475 0.94252 0.91507 1.21407 0.92694 1.28412 1.10568 0.92125 1.25826 1.02671 0.95754 0.95775 1.70098 1.36995 1.34109 1.17165 0.85682 0.80914 0.78114 0.77391 1.19550 1.21836 1.19324 1.61899 1.58889 1.01351 1.02326 1.22216 0.98470 0.97407 0.89958 1.21543 1.00451 0.94699 0.97456 1.21280 1.02742 0.95480 0.92061 1.22956 0.99631 0.88186 0.99745 1.24417 0.91068 0.97223 1.06079 1.20466 1.01751 0.90974 0.72620 1.92975 1.96061 1.86821 1.38352 1.92984 1.84133 1.83223 1.55504 1.21448 0.95779 0.91112 0.94731 0.93580 0.92357 0.91225 0.99351 0.98740 0.93465 0.90492 0.94391 0.91599 0.88284 0.89353 0.90157 0.87707 0.83665 0.93944 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.74 8.45 71.98 0.61 -5.14 16 2 C 0.10 3.73 2.28 44.92 0.10 3.83 16 3 H 0.07 2.80 7.94 -2.39 -0.02 2.78 16 4 C 0.03 1.76 4.34 29.85 0.13 1.88 16 5 C -0.49 -27.28 8.78 25.60 0.22 -27.06 16 6 H 0.06 3.28 7.75 -2.91 -0.02 3.26 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 8 N -0.94 -57.74 13.29 21.45 0.28 -57.45 16 9 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 N -0.52 -18.38 4.26 -870.65 -3.71 -22.09 16 14 C 0.05 1.23 4.99 86.32 0.43 1.66 16 15 C -0.10 -2.19 6.12 30.70 0.19 -2.00 16 16 C -0.08 -1.69 5.43 30.78 0.17 -1.52 16 17 C -0.10 -3.00 2.12 -52.17 -0.11 -3.11 16 18 C -0.15 -4.35 9.89 30.54 0.30 -4.05 16 19 C 0.18 5.43 5.15 30.57 0.16 5.58 16 20 F -0.16 -4.54 17.09 44.97 0.77 -3.77 16 21 F -0.18 -6.37 17.07 44.97 0.77 -5.60 16 22 C 0.10 3.43 4.04 86.32 0.35 3.77 16 23 H 0.05 1.56 6.38 -2.39 -0.02 1.55 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 1.87 6.89 -2.39 -0.02 1.86 16 26 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 27 H -0.01 -0.32 6.39 -2.39 -0.02 -0.34 16 28 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.08 1.95 7.94 -2.39 -0.02 1.93 16 30 H 0.04 0.91 7.01 -2.39 -0.02 0.90 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.62 8.00 -2.39 -0.02 1.60 16 34 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 36 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.04 1.42 6.36 -2.38 -0.02 1.41 16 38 H 0.05 2.36 6.16 -2.38 -0.01 2.35 16 Total: -1.00 -63.98 305.73 4.19 -59.79 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.04 Total: 8.19 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 3.01 Total: -25.93 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -3.42 Total: -79.54 kcal Atomic # 9 Polarization: -10.90 SS G_CDS: 1.54 Total: -9.37 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -63.98 4.19 -59.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844438802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.393 kcal (2) G-P(sol) polarization free energy of solvation -63.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds