Wall clock time and date at job start Mon Mar 30 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00387 * 2 1 4 4 H 1.48502 * 109.46998 * 239.99721 * 3 2 1 5 5 H 1.48497 * 109.46789 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47031 * 119.99718 * 3 2 1 7 7 C 1.37879 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47299 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47047 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46783 * 184.43165 * 11 10 9 13 13 C 1.46787 * 111.00273 * 302.61337 * 12 11 10 14 14 C 1.53006 * 109.87268 * 188.90153 * 13 12 11 15 15 C 1.53334 * 109.19955 * 297.72318 * 14 13 12 16 16 C 1.53237 * 108.50607 * 54.31143 * 15 14 13 17 17 C 1.52788 * 117.74109 * 93.87200 * 16 15 14 18 18 C 1.52758 * 117.79664 * 162.82221 * 16 15 14 19 19 F 1.39901 * 117.49899 * 359.78090 * 18 16 15 20 20 F 1.39893 * 117.50417 * 144.82553 * 18 16 15 21 21 C 1.47049 * 111.00052 * 66.82762 * 12 11 10 22 22 H 0.97007 * 119.99824 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47559 * 59.99951 * 9 7 2 24 24 H 1.09001 * 109.47265 * 299.99601 * 9 7 2 25 25 H 1.09000 * 109.46815 * 59.99545 * 10 9 7 26 26 H 1.09001 * 109.46676 * 300.00011 * 10 9 7 27 27 H 1.09001 * 109.47003 * 64.43874 * 11 10 9 28 28 H 1.08994 * 109.47619 * 304.43200 * 11 10 9 29 29 H 1.08992 * 109.40609 * 309.02823 * 13 12 11 30 30 H 1.08999 * 109.40230 * 68.78252 * 13 12 11 31 31 H 1.08999 * 109.52058 * 177.80741 * 14 13 12 32 32 H 1.08997 * 109.56230 * 57.66428 * 14 13 12 33 33 H 1.09001 * 109.62975 * 294.61217 * 15 14 13 34 34 H 1.08994 * 109.79975 * 174.11372 * 15 14 13 35 35 H 1.09005 * 117.50501 * 215.25493 * 17 16 15 36 36 H 1.09004 * 117.50727 * 0.28012 * 17 16 15 37 37 H 1.08998 * 109.56407 * 297.63299 * 21 12 11 38 38 H 1.08999 * 109.56301 * 57.96986 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4310 -6.1016 0.1082 13 6 3.4092 -6.0654 -0.9856 14 6 4.2436 -7.3479 -0.9800 15 6 5.0252 -7.4352 0.3363 16 6 4.0351 -7.3099 1.4992 17 6 3.4831 -8.5991 2.1053 18 6 4.5004 -7.7606 2.8826 19 9 5.8011 -8.2634 2.9946 20 9 4.0343 -7.0402 3.9874 21 6 3.0983 -6.1010 1.4186 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8717 -3.6044 -0.8895 27 1 0.9140 -5.0803 -0.9257 28 1 0.7954 -5.0110 0.8490 29 1 2.8852 -5.9784 -1.9373 30 1 4.0662 -5.2054 -0.8555 31 1 4.9412 -7.3323 -1.8173 32 1 3.5853 -8.2119 -1.0704 33 1 5.7519 -6.6242 0.3851 34 1 5.5412 -8.3934 0.3964 35 1 2.4507 -8.5894 2.4548 36 1 3.8269 -9.5425 1.6809 37 1 3.6756 -5.1836 1.5338 38 1 2.3505 -6.1653 2.2090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844439154.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:55 Heat of formation + Delta-G solvation = -85.136147 kcal Electronic energy + Delta-G solvation = -19817.645065 eV Core-core repulsion = 16523.932178 eV Total energy + Delta-G solvation = -3293.712887 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.72822 -47.40131 -39.49626 -36.26002 -33.75035 -32.63446 -30.71867 -27.93398 -26.68797 -24.40968 -22.93101 -22.39516 -21.52453 -20.30885 -18.62988 -17.67962 -16.97163 -16.27509 -16.02034 -15.15231 -14.70384 -14.62288 -14.47089 -14.13399 -14.02340 -13.79220 -13.65358 -13.42599 -13.07267 -12.72757 -12.38806 -12.23321 -11.91550 -11.20955 -11.17260 -11.09017 -10.90708 -10.74424 -10.68191 -10.53661 -10.44400 -9.79231 -9.63743 -9.43970 -9.20486 -8.35855 -7.93967 -6.00855 -4.03613 2.87963 2.98472 3.32118 3.36601 3.39070 4.01947 4.10264 4.25874 4.44965 4.54519 4.69311 4.95114 5.06925 5.24189 5.33841 5.34596 5.47741 5.57662 5.62726 5.66958 5.71079 5.72820 5.79224 5.95005 5.98110 6.06527 6.21295 6.27619 6.55375 6.73501 7.01116 7.25678 7.35099 7.64460 7.79104 7.98192 8.41420 9.02939 9.60558 11.10146 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.004327 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.065326 B = 6470.076082 C = 6801.579468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.025 3.975 10 C -0.146 4.146 11 C 0.053 3.947 12 N -0.533 5.533 13 C 0.049 3.951 14 C -0.110 4.110 15 C -0.086 4.086 16 C -0.108 4.108 17 C -0.157 4.157 18 C 0.191 3.809 19 F -0.164 7.164 20 F -0.160 7.160 21 C 0.086 3.914 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.054 0.946 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.923 -18.311 1.293 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.185 4.185 11 C -0.074 4.074 12 N -0.256 5.256 13 C -0.079 4.079 14 C -0.148 4.148 15 C -0.124 4.124 16 C -0.110 4.110 17 C -0.195 4.195 18 C 0.154 3.846 19 F -0.144 7.144 20 F -0.141 7.141 21 C -0.042 4.042 22 H 0.071 0.929 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.072 0.928 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.518 -18.626 1.283 20.127 hybrid contribution 1.050 1.810 0.402 2.131 sum 8.568 -16.815 1.685 18.947 Atomic orbital electron populations 1.69951 1.06031 1.26706 1.50754 1.25015 0.94840 0.99203 0.95303 0.86677 0.79623 0.83222 0.78604 1.20271 1.21219 1.20268 1.21207 0.92873 0.91196 1.50730 0.92988 1.19014 0.93838 0.91204 0.97196 1.22242 1.00034 0.95901 1.00275 1.22354 0.94397 0.88114 1.02541 1.62266 1.17215 1.45015 1.01150 1.22079 0.94160 0.96579 0.95115 1.21568 0.98320 0.98932 0.96000 1.21242 0.95917 1.02628 0.92582 1.22890 0.99253 0.97423 0.91417 1.24381 0.99354 0.96768 0.99016 1.20252 0.80125 0.99895 0.84313 1.92994 1.37528 1.87329 1.96559 1.93024 1.87599 1.78329 1.55108 1.21646 0.95507 0.94012 0.93056 0.92935 0.96572 0.96613 0.93415 0.93201 0.90730 0.90948 0.90492 0.93986 0.91132 0.90950 0.90818 0.91018 0.85886 0.86323 0.92753 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.51 16 10 C -0.15 -2.93 4.41 -26.73 -0.12 -3.05 16 11 C 0.05 0.88 5.34 -3.82 -0.02 0.86 16 12 N -0.53 -7.52 4.86 -234.50 -1.14 -8.66 16 13 C 0.05 0.62 4.63 -3.88 -0.02 0.61 16 14 C -0.11 -1.11 6.11 -26.56 -0.16 -1.27 16 15 C -0.09 -0.88 5.44 -26.44 -0.14 -1.02 16 16 C -0.11 -1.23 2.11 -154.54 -0.33 -1.56 16 17 C -0.16 -1.49 9.89 -26.82 -0.27 -1.76 16 18 C 0.19 2.28 5.15 -26.84 -0.14 2.14 16 19 F -0.16 -2.03 17.09 2.25 0.04 -1.99 16 20 F -0.16 -2.19 17.07 2.25 0.04 -2.15 16 21 C 0.09 1.17 4.59 -3.66 -0.02 1.15 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.97 6.44 -51.93 -0.33 0.64 16 26 H 0.05 1.00 6.82 -51.93 -0.35 0.64 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 29 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 30 H 0.04 0.59 6.87 -51.93 -0.36 0.24 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.64 7.99 -51.93 -0.42 0.22 16 35 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.83 6.53 -51.93 -0.34 0.49 16 38 H 0.08 1.14 7.95 -51.93 -0.41 0.72 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -30.02 310.34 -8.40 -38.42 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.98 Total: -3.82 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -1.76 Total: -17.00 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: -0.40 Total: -34.90 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.08 Total: -4.14 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.02 -8.40 -38.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844439154.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.715 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds