Wall clock time and date at job start Mon Mar 30 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00387 * 2 1 4 4 H 1.48502 * 109.46998 * 239.99721 * 3 2 1 5 5 H 1.48497 * 109.46789 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47031 * 119.99718 * 3 2 1 7 7 C 1.37879 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47299 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47047 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46783 * 184.43165 * 11 10 9 13 13 C 1.46787 * 111.00273 * 302.61337 * 12 11 10 14 14 C 1.53006 * 109.87268 * 188.90153 * 13 12 11 15 15 C 1.53334 * 109.19955 * 297.72318 * 14 13 12 16 16 C 1.53237 * 108.50607 * 54.31143 * 15 14 13 17 17 C 1.52788 * 117.74109 * 93.87200 * 16 15 14 18 18 C 1.52758 * 117.79664 * 162.82221 * 16 15 14 19 19 F 1.39901 * 117.49899 * 359.78090 * 18 16 15 20 20 F 1.39893 * 117.50417 * 144.82553 * 18 16 15 21 21 C 1.47049 * 111.00052 * 66.82762 * 12 11 10 22 22 H 0.97007 * 119.99824 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47559 * 59.99951 * 9 7 2 24 24 H 1.09001 * 109.47265 * 299.99601 * 9 7 2 25 25 H 1.09000 * 109.46815 * 59.99545 * 10 9 7 26 26 H 1.09001 * 109.46676 * 300.00011 * 10 9 7 27 27 H 1.09001 * 109.47003 * 64.43874 * 11 10 9 28 28 H 1.08994 * 109.47619 * 304.43200 * 11 10 9 29 29 H 1.08992 * 109.40609 * 309.02823 * 13 12 11 30 30 H 1.08999 * 109.40230 * 68.78252 * 13 12 11 31 31 H 1.08999 * 109.52058 * 177.80741 * 14 13 12 32 32 H 1.08997 * 109.56230 * 57.66428 * 14 13 12 33 33 H 1.09001 * 109.62975 * 294.61217 * 15 14 13 34 34 H 1.08994 * 109.79975 * 174.11372 * 15 14 13 35 35 H 1.09005 * 117.50501 * 215.25493 * 17 16 15 36 36 H 1.09004 * 117.50727 * 0.28012 * 17 16 15 37 37 H 1.08998 * 109.56407 * 297.63299 * 21 12 11 38 38 H 1.08999 * 109.56301 * 57.96986 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4310 -6.1016 0.1082 13 6 3.4092 -6.0654 -0.9856 14 6 4.2436 -7.3479 -0.9800 15 6 5.0252 -7.4352 0.3363 16 6 4.0351 -7.3099 1.4992 17 6 3.4831 -8.5991 2.1053 18 6 4.5004 -7.7606 2.8826 19 9 5.8011 -8.2634 2.9946 20 9 4.0343 -7.0402 3.9874 21 6 3.0983 -6.1010 1.4186 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8717 -3.6044 -0.8895 27 1 0.9140 -5.0803 -0.9257 28 1 0.7954 -5.0110 0.8490 29 1 2.8852 -5.9784 -1.9373 30 1 4.0662 -5.2054 -0.8555 31 1 4.9412 -7.3323 -1.8173 32 1 3.5853 -8.2119 -1.0704 33 1 5.7519 -6.6242 0.3851 34 1 5.5412 -8.3934 0.3964 35 1 2.4507 -8.5894 2.4548 36 1 3.8269 -9.5425 1.6809 37 1 3.6756 -5.1836 1.5338 38 1 2.3505 -6.1653 2.2090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844439154.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:54 Heat of formation + Delta-G solvation = -102.439409 kcal Electronic energy + Delta-G solvation = -19818.395391 eV Core-core repulsion = 16523.932178 eV Total energy + Delta-G solvation = -3294.463212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.67418 -48.36346 -40.53756 -37.43986 -35.51748 -33.99082 -32.37322 -29.05358 -28.24019 -25.96997 -23.81675 -23.65212 -22.91178 -21.72176 -19.65685 -18.63633 -18.55401 -17.81226 -17.00714 -16.57923 -16.34236 -15.78877 -15.61842 -15.35422 -15.05485 -15.01812 -14.63695 -14.57793 -14.28910 -13.97620 -13.78193 -13.52278 -13.33673 -12.92994 -12.69066 -12.51859 -12.46216 -12.07933 -12.07216 -11.63154 -11.50923 -11.36173 -11.33587 -11.21714 -10.61975 -10.57302 -9.22839 -8.22070 -6.34109 1.36930 1.39577 1.47770 1.96934 2.14259 2.38133 2.99272 3.10076 3.25568 3.30286 3.64822 3.77459 4.05342 4.11662 4.16786 4.34263 4.38328 4.48312 4.59601 4.62378 4.66527 4.76447 4.81068 4.87830 4.92329 4.95756 5.05887 5.09714 5.20106 5.22097 5.40399 5.46927 5.68411 5.81728 6.03349 6.12675 6.23164 6.82026 7.35142 8.88624 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.004327 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.065326 B = 6470.076082 C = 6801.579468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.028 3.972 10 C -0.128 4.128 11 C 0.063 3.937 12 N -0.522 5.522 13 C 0.043 3.957 14 C -0.101 4.101 15 C -0.085 4.085 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.172 3.828 19 F -0.168 7.168 20 F -0.177 7.177 21 C 0.085 3.915 22 H 0.264 0.736 23 H -0.005 1.005 24 H -0.009 1.009 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.024 0.976 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.147 0.853 37 H 0.030 0.970 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.057 -19.621 0.714 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.167 4.167 11 C -0.065 4.065 12 N -0.245 5.245 13 C -0.085 4.085 14 C -0.138 4.138 15 C -0.122 4.122 16 C -0.118 4.118 17 C -0.166 4.166 18 C 0.135 3.865 19 F -0.148 7.148 20 F -0.157 7.157 21 C -0.043 4.043 22 H 0.073 0.927 23 H 0.014 0.986 24 H 0.009 0.991 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.043 0.957 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.149 0.851 36 H 0.165 0.835 37 H 0.049 0.951 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.667 -19.954 0.702 21.767 hybrid contribution 0.685 2.223 0.593 2.400 sum 9.352 -17.731 1.295 20.088 Atomic orbital electron populations 1.70077 1.07686 1.27872 1.51427 1.25945 0.95774 1.03215 0.94648 0.85552 0.78379 0.78344 0.79098 1.19141 1.20514 1.19466 1.21646 0.93243 0.92691 1.50897 0.92852 1.18917 0.94275 0.92812 0.94920 1.22018 0.98835 0.95871 0.99963 1.22163 0.94584 0.87086 1.02633 1.62319 1.17474 1.42825 1.01883 1.22220 0.93919 0.97820 0.94563 1.21532 0.98309 0.97361 0.96629 1.21283 0.95501 1.03437 0.91994 1.22861 0.99498 0.97611 0.91787 1.24529 0.99066 0.96707 0.96296 1.20579 0.80709 1.01326 0.83923 1.92980 1.37965 1.87331 1.96549 1.92986 1.87788 1.78963 1.55991 1.21605 0.95577 0.94454 0.92660 0.92680 0.98620 0.99054 0.94042 0.93083 0.90287 0.91321 0.90233 0.95718 0.89139 0.89846 0.91772 0.88875 0.85082 0.83459 0.95137 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.55 -31.72 9.11 25.60 0.23 -31.49 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.13 -5.27 4.41 30.60 0.13 -5.13 16 11 C 0.06 2.10 5.34 86.30 0.46 2.57 16 12 N -0.52 -14.26 4.86 -895.83 -4.35 -18.61 16 13 C 0.04 1.03 4.63 86.33 0.40 1.43 16 14 C -0.10 -1.73 6.11 30.71 0.19 -1.54 16 15 C -0.08 -1.52 5.44 30.79 0.17 -1.35 16 16 C -0.12 -2.45 2.11 -52.20 -0.11 -2.56 16 17 C -0.13 -2.06 9.89 30.54 0.30 -1.76 16 18 C 0.17 3.84 5.15 30.53 0.16 3.99 16 19 F -0.17 -3.90 17.09 44.97 0.77 -3.13 16 20 F -0.18 -4.79 17.07 44.97 0.77 -4.03 16 21 C 0.09 2.30 4.59 86.32 0.40 2.69 16 22 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 23 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 25 H 0.04 1.74 6.44 -2.39 -0.02 1.72 16 26 H 0.05 2.07 6.82 -2.39 -0.02 2.05 16 27 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.07 2.33 8.10 -2.39 -0.02 2.31 16 29 H 0.08 1.89 8.09 -2.39 -0.02 1.87 16 30 H 0.02 0.68 6.87 -2.39 -0.02 0.67 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.31 7.99 -2.39 -0.02 1.29 16 35 H 0.13 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.15 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.03 0.96 6.53 -2.39 -0.02 0.95 16 38 H 0.08 2.16 7.95 -2.39 -0.02 2.14 16 Total: -1.00 -65.26 310.34 3.46 -61.80 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 1.03 Total: 4.80 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 2.94 Total: -30.88 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -4.07 Total: -75.37 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 1.54 Total: -7.15 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.26 3.46 -61.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844439154.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.640 kcal (2) G-P(sol) polarization free energy of solvation -65.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds