Wall clock time and date at job start Mon Mar 30 2020 07:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99901 * 2 1 4 4 H 1.48507 * 109.47063 * 270.00149 * 3 2 1 5 5 H 1.48498 * 109.47367 * 30.00000 * 3 2 1 6 6 H 1.48497 * 109.47332 * 150.00188 * 3 2 1 7 7 C 1.37880 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99558 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00201 * 179.97438 * 7 2 1 10 10 C 1.50706 * 109.47350 * 179.97438 * 9 7 2 11 11 C 1.38283 * 119.92045 * 89.99817 * 10 9 7 12 12 C 1.38110 * 120.07007 * 180.02562 * 11 10 9 13 13 C 1.38911 * 119.92610 * 359.97438 * 12 11 10 14 14 N 1.39675 * 120.07168 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99822 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47267 * 180.02562 * 15 14 13 17 17 C 1.53005 * 109.47277 * 180.02562 * 16 15 14 18 18 C 1.53004 * 109.46983 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.49710 * 243.74225 * 18 17 16 20 20 C 1.53004 * 117.49594 * 175.08623 * 18 17 16 21 21 C 1.38909 * 119.85090 * 0.25797 * 13 12 11 22 22 C 1.38114 * 119.92453 * 359.50985 * 21 13 12 23 23 H 0.96994 * 120.00059 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46948 * 59.99831 * 9 7 2 25 25 H 1.08995 * 109.47196 * 299.99689 * 9 7 2 26 26 H 1.08003 * 119.96586 * 0.02713 * 11 10 9 27 27 H 1.08003 * 120.03111 * 179.97438 * 12 11 10 28 28 H 0.96999 * 120.00193 * 0.02562 * 14 13 12 29 29 H 1.09004 * 109.47024 * 300.00458 * 15 14 13 30 30 H 1.09005 * 109.47136 * 60.00074 * 15 14 13 31 31 H 1.09004 * 109.47330 * 300.00096 * 16 15 14 32 32 H 1.09005 * 109.47124 * 59.99892 * 16 15 14 33 33 H 1.08997 * 109.46785 * 299.99511 * 17 16 15 34 34 H 1.08992 * 109.47085 * 59.99748 * 17 16 15 35 35 H 1.08997 * 115.55270 * 29.41524 * 18 17 16 36 36 H 1.09007 * 117.49752 * 0.02562 * 19 18 17 37 37 H 1.08997 * 117.49921 * 145.02252 * 19 18 17 38 38 H 1.08994 * 117.49757 * 214.97907 * 20 18 17 39 39 H 1.09002 * 117.49648 * 359.97438 * 20 18 17 40 40 H 1.08001 * 120.04024 * 179.74717 * 21 13 12 41 41 H 1.07991 * 119.96226 * 180.23198 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0140 -2.6148 -0.0010 11 6 4.2435 -3.2654 -1.1995 12 6 4.7034 -4.5677 -1.2030 13 6 4.9360 -5.2237 -0.0008 14 7 5.4007 -6.5409 -0.0008 15 6 5.6449 -7.2314 1.2679 16 6 6.1458 -8.6497 0.9885 17 6 6.4002 -9.3712 2.3136 18 6 6.9018 -10.7894 2.0340 19 6 6.0221 -11.9533 2.4948 20 6 7.3247 -11.6385 3.2345 21 6 4.6999 -4.5688 1.2012 22 6 4.2445 -3.2649 1.1976 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8746 -0.6800 -0.8911 26 1 4.0629 -2.7546 -2.1338 27 1 4.8820 -5.0753 -2.1394 28 1 5.5617 -6.9984 -0.8408 29 1 6.3968 -6.6868 1.8391 30 1 4.7182 -7.2791 1.8400 31 1 5.3942 -9.1946 0.4171 32 1 7.0726 -8.6017 0.4167 33 1 7.1517 -8.8266 2.8852 34 1 5.4733 -9.4191 2.8849 35 1 7.4594 -10.9165 1.1062 36 1 5.0859 -11.7087 2.9967 37 1 6.0013 -12.8464 1.8702 38 1 8.1604 -12.3245 3.0962 39 1 7.2461 -11.1866 4.2233 40 1 4.8758 -5.0773 2.1376 41 1 4.0643 -2.7539 2.1317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902226248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:46 Heat of formation + Delta-G solvation = 27.739316 kcal Electronic energy + Delta-G solvation = -17803.742356 eV Core-core repulsion = 15069.153647 eV Total energy + Delta-G solvation = -2734.588710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.98920 -38.12528 -36.05261 -33.44921 -32.33864 -30.34220 -30.19600 -27.32155 -25.47008 -22.88745 -22.66440 -22.41086 -21.09304 -20.78423 -19.86432 -16.87266 -16.67768 -16.09944 -15.72864 -15.41120 -14.76685 -14.47953 -14.01841 -13.57524 -13.54216 -13.23480 -12.77007 -12.50891 -12.32422 -12.12745 -12.05373 -11.89667 -11.54078 -11.46819 -11.29277 -11.15242 -10.58361 -10.53439 -10.23331 -10.19426 -10.08470 -9.87564 -9.39215 -9.04995 -8.51057 -8.24191 -6.73809 -6.00017 -3.97778 2.11606 2.35049 3.33529 3.40639 3.40917 3.44846 3.63349 4.29333 4.48109 4.54566 4.56383 4.60823 4.75046 4.84953 5.00482 5.27310 5.29200 5.32194 5.43706 5.48892 5.49932 5.55109 5.56952 5.59526 5.74499 5.82634 5.95774 5.98981 6.02178 6.12572 6.27581 6.42008 6.67582 6.83583 7.10266 7.12870 7.22741 7.45267 7.77452 7.77668 7.85949 8.06425 8.60013 9.06948 9.61213 11.13179 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.048668 B = 0.002769 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.185589 B =10109.465377 C =10245.213790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.073 0.927 9 C 0.020 3.980 10 C -0.082 4.082 11 C -0.078 4.078 12 C -0.193 4.193 13 C 0.184 3.816 14 N -0.758 5.758 15 C 0.129 3.871 16 C -0.126 4.126 17 C -0.086 4.086 18 C -0.152 4.152 19 C -0.182 4.182 20 C -0.183 4.183 21 C -0.194 4.194 22 C -0.078 4.078 23 H 0.263 0.737 24 H 0.024 0.976 25 H 0.020 0.980 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.393 0.607 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.160 -20.123 3.419 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.546 4.546 8 H 0.091 0.909 9 C -0.018 4.018 10 C -0.083 4.083 11 C -0.096 4.096 12 C -0.216 4.216 13 C 0.085 3.915 14 N -0.391 5.391 15 C 0.004 3.996 16 C -0.164 4.164 17 C -0.124 4.124 18 C -0.170 4.170 19 C -0.219 4.219 20 C -0.220 4.220 21 C -0.217 4.217 22 C -0.096 4.096 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.135 0.865 27 H 0.127 0.873 28 H 0.227 0.773 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.015 -20.049 3.628 25.310 hybrid contribution 0.283 0.617 -0.341 0.760 sum 15.299 -19.432 3.288 24.949 Atomic orbital electron populations 1.69909 1.06251 1.26807 1.51251 1.25027 0.94738 0.99021 0.94727 0.86800 0.80408 0.83709 0.78554 1.20261 1.21389 1.18934 1.21024 0.88642 0.94500 1.50473 0.90912 1.18703 0.97131 0.89008 0.96914 1.20042 0.97835 0.98344 0.92110 1.20801 0.97209 0.93512 0.98096 1.20457 1.09367 0.96301 0.95443 1.17634 0.95543 0.84360 0.94008 1.44414 1.75906 1.11786 1.07015 1.21198 0.99717 0.91629 0.87013 1.21724 1.01709 0.94945 0.98011 1.21093 1.01191 0.93026 0.97126 1.22345 1.03692 0.92220 0.98777 1.23061 0.95079 0.99714 1.04047 1.22982 0.98566 1.03623 0.96862 1.20506 1.09339 0.96220 0.95611 1.20814 0.97210 0.93550 0.98070 0.92753 0.95796 0.96224 0.86517 0.87310 0.77347 0.92814 0.92739 0.91317 0.91448 0.91267 0.91450 0.87853 0.88701 0.88993 0.88950 0.88756 0.87246 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.51 -14.80 9.65 -34.44 -0.33 -15.13 16 8 H 0.07 2.32 7.98 -52.49 -0.42 1.91 16 9 C 0.02 0.48 4.17 -29.03 -0.12 0.36 16 10 C -0.08 -1.79 5.07 -104.59 -0.53 -2.32 16 11 C -0.08 -1.54 9.69 -39.61 -0.38 -1.92 16 12 C -0.19 -3.31 9.90 -39.38 -0.39 -3.70 16 13 C 0.18 3.01 6.65 -83.79 -0.56 2.46 16 14 N -0.76 -9.53 5.73 -58.63 -0.34 -9.87 16 15 C 0.13 1.34 4.91 -4.05 -0.02 1.32 16 16 C -0.13 -0.98 5.29 -26.73 -0.14 -1.12 16 17 C -0.09 -0.61 5.50 -26.73 -0.15 -0.76 16 18 C -0.15 -1.04 5.73 -90.62 -0.52 -1.56 16 19 C -0.18 -1.20 10.18 -26.70 -0.27 -1.47 16 20 C -0.18 -1.16 10.25 -26.69 -0.27 -1.44 16 21 C -0.19 -3.37 9.31 -39.38 -0.37 -3.74 16 22 C -0.08 -1.55 9.69 -39.61 -0.38 -1.93 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 25 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 26 H 0.12 2.22 8.06 -52.48 -0.42 1.79 16 27 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 28 H 0.39 4.23 8.49 -40.82 -0.35 3.88 16 29 H 0.05 0.57 7.96 -51.93 -0.41 0.15 16 30 H 0.05 0.60 7.94 -51.93 -0.41 0.19 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.49 7.88 -51.93 -0.41 0.08 16 35 H 0.10 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.09 0.62 8.03 -51.92 -0.42 0.20 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.11 1.65 6.74 -52.49 -0.35 1.29 16 41 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -31.56 338.45 -10.59 -42.15 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.92 Total: 1.98 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -4.54 Total: -29.12 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.44 Total: -37.28 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.56 -10.59 -42.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902226248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.891 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds