Wall clock time and date at job start Mon Mar 30 2020 07:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99901 * 2 1 4 4 H 1.48507 * 109.47063 * 270.00149 * 3 2 1 5 5 H 1.48498 * 109.47367 * 30.00000 * 3 2 1 6 6 H 1.48497 * 109.47332 * 150.00188 * 3 2 1 7 7 C 1.37880 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99558 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00201 * 179.97438 * 7 2 1 10 10 C 1.50706 * 109.47350 * 179.97438 * 9 7 2 11 11 C 1.38283 * 119.92045 * 89.99817 * 10 9 7 12 12 C 1.38110 * 120.07007 * 180.02562 * 11 10 9 13 13 C 1.38911 * 119.92610 * 359.97438 * 12 11 10 14 14 N 1.39675 * 120.07168 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99822 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47267 * 180.02562 * 15 14 13 17 17 C 1.53005 * 109.47277 * 180.02562 * 16 15 14 18 18 C 1.53004 * 109.46983 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.49710 * 243.74225 * 18 17 16 20 20 C 1.53004 * 117.49594 * 175.08623 * 18 17 16 21 21 C 1.38909 * 119.85090 * 0.25797 * 13 12 11 22 22 C 1.38114 * 119.92453 * 359.50985 * 21 13 12 23 23 H 0.96994 * 120.00059 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46948 * 59.99831 * 9 7 2 25 25 H 1.08995 * 109.47196 * 299.99689 * 9 7 2 26 26 H 1.08003 * 119.96586 * 0.02713 * 11 10 9 27 27 H 1.08003 * 120.03111 * 179.97438 * 12 11 10 28 28 H 0.96999 * 120.00193 * 0.02562 * 14 13 12 29 29 H 1.09004 * 109.47024 * 300.00458 * 15 14 13 30 30 H 1.09005 * 109.47136 * 60.00074 * 15 14 13 31 31 H 1.09004 * 109.47330 * 300.00096 * 16 15 14 32 32 H 1.09005 * 109.47124 * 59.99892 * 16 15 14 33 33 H 1.08997 * 109.46785 * 299.99511 * 17 16 15 34 34 H 1.08992 * 109.47085 * 59.99748 * 17 16 15 35 35 H 1.08997 * 115.55270 * 29.41524 * 18 17 16 36 36 H 1.09007 * 117.49752 * 0.02562 * 19 18 17 37 37 H 1.08997 * 117.49921 * 145.02252 * 19 18 17 38 38 H 1.08994 * 117.49757 * 214.97907 * 20 18 17 39 39 H 1.09002 * 117.49648 * 359.97438 * 20 18 17 40 40 H 1.08001 * 120.04024 * 179.74717 * 21 13 12 41 41 H 1.07991 * 119.96226 * 180.23198 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0140 -2.6148 -0.0010 11 6 4.2435 -3.2654 -1.1995 12 6 4.7034 -4.5677 -1.2030 13 6 4.9360 -5.2237 -0.0008 14 7 5.4007 -6.5409 -0.0008 15 6 5.6449 -7.2314 1.2679 16 6 6.1458 -8.6497 0.9885 17 6 6.4002 -9.3712 2.3136 18 6 6.9018 -10.7894 2.0340 19 6 6.0221 -11.9533 2.4948 20 6 7.3247 -11.6385 3.2345 21 6 4.6999 -4.5688 1.2012 22 6 4.2445 -3.2649 1.1976 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8746 -0.6800 -0.8911 26 1 4.0629 -2.7546 -2.1338 27 1 4.8820 -5.0753 -2.1394 28 1 5.5617 -6.9984 -0.8408 29 1 6.3968 -6.6868 1.8391 30 1 4.7182 -7.2791 1.8400 31 1 5.3942 -9.1946 0.4171 32 1 7.0726 -8.6017 0.4167 33 1 7.1517 -8.8266 2.8852 34 1 5.4733 -9.4191 2.8849 35 1 7.4594 -10.9165 1.1062 36 1 5.0859 -11.7087 2.9967 37 1 6.0013 -12.8464 1.8702 38 1 8.1604 -12.3245 3.0962 39 1 7.2461 -11.1866 4.2233 40 1 4.8758 -5.0773 2.1376 41 1 4.0643 -2.7539 2.1317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902226248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:45 Heat of formation + Delta-G solvation = 10.972776 kcal Electronic energy + Delta-G solvation = -17804.469408 eV Core-core repulsion = 15069.153647 eV Total energy + Delta-G solvation = -2735.315761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.32583 -38.72672 -37.16887 -35.16052 -33.76998 -31.86740 -31.66471 -28.72771 -26.68822 -24.24593 -23.89553 -23.21362 -22.18168 -21.54342 -21.17430 -18.92548 -18.09384 -16.93036 -16.66740 -16.46876 -16.08589 -15.81942 -15.27390 -14.88297 -14.73965 -14.44441 -14.26687 -14.12339 -13.71040 -13.39607 -13.09170 -12.94974 -12.75362 -12.40399 -12.38455 -12.11229 -11.92088 -11.82323 -11.70253 -11.59944 -11.47050 -11.05895 -10.75943 -10.73865 -10.54708 -9.68688 -8.27729 -8.05382 -6.30975 0.66937 0.87673 1.37414 1.39387 1.52023 2.37865 2.58066 2.93748 3.07055 3.13112 3.70704 4.01344 4.04918 4.11475 4.15111 4.20319 4.23938 4.41091 4.44840 4.66081 4.70572 4.75863 4.79461 4.80029 4.82482 4.89502 5.01280 5.08077 5.12369 5.15976 5.22828 5.26659 5.33032 5.35449 5.46539 5.52770 5.61740 5.69476 6.05544 6.16190 6.32259 6.57625 6.75743 6.98191 7.32166 8.89830 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.048668 B = 0.002769 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.185589 B =10109.465377 C =10245.213790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.516 4.516 8 H 0.025 0.975 9 C 0.027 3.973 10 C -0.124 4.124 11 C -0.089 4.089 12 C -0.194 4.194 13 C 0.196 3.804 14 N -0.746 5.746 15 C 0.125 3.875 16 C -0.115 4.115 17 C -0.084 4.084 18 C -0.157 4.157 19 C -0.187 4.187 20 C -0.184 4.184 21 C -0.198 4.198 22 C -0.089 4.089 23 H 0.267 0.733 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.405 0.595 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.133 0.867 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.471 -21.182 3.351 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.554 4.554 8 H 0.043 0.957 9 C -0.010 4.010 10 C -0.126 4.126 11 C -0.108 4.108 12 C -0.216 4.216 13 C 0.093 3.907 14 N -0.378 5.378 15 C 0.001 3.999 16 C -0.152 4.152 17 C -0.122 4.122 18 C -0.175 4.175 19 C -0.224 4.224 20 C -0.221 4.221 21 C -0.221 4.221 22 C -0.108 4.108 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.134 0.866 27 H 0.156 0.844 28 H 0.241 0.759 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.150 0.850 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 17.355 -21.163 3.556 27.599 hybrid contribution -0.446 0.728 -0.301 0.905 sum 16.909 -20.435 3.255 26.723 Atomic orbital electron populations 1.70070 1.08293 1.28152 1.52741 1.26035 0.95661 1.03486 0.94163 0.85615 0.79433 0.78023 0.79338 1.18965 1.20807 1.17055 1.21256 0.91190 0.92786 1.50175 0.95698 1.18538 0.93944 0.91563 0.96942 1.19928 1.01217 0.97573 0.93862 1.20901 0.97677 0.94829 0.97366 1.20697 1.08488 0.95334 0.97116 1.17757 0.93835 0.85677 0.93395 1.44517 1.74278 1.10332 1.08682 1.21364 0.99701 0.92926 0.85934 1.21625 1.01963 0.93166 0.98478 1.21058 1.01179 0.93245 0.96696 1.22361 1.03933 0.91989 0.99186 1.23123 0.95136 0.99917 1.04262 1.23055 0.98685 1.03568 0.96782 1.20694 1.08870 0.95325 0.97180 1.20888 0.97760 0.94799 0.97360 0.92465 0.95656 0.95683 0.86569 0.84355 0.75948 0.92474 0.93234 0.91198 0.90597 0.91015 0.91744 0.87430 0.88898 0.88470 0.88236 0.88656 0.84952 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 2 C 0.00 0.17 5.47 84.66 0.46 0.64 16 3 Si 0.95 45.30 27.47 68.60 1.88 47.18 16 4 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 7 C -0.52 -31.17 9.65 25.60 0.25 -30.92 16 8 H 0.02 1.68 7.98 -2.91 -0.02 1.66 16 9 C 0.03 1.37 4.17 29.10 0.12 1.49 16 10 C -0.12 -5.51 5.07 -19.84 -0.10 -5.61 16 11 C -0.09 -3.52 9.69 22.25 0.22 -3.30 16 12 C -0.19 -6.30 9.90 22.40 0.22 -6.07 16 13 C 0.20 5.97 6.65 38.21 0.25 6.23 16 14 N -0.75 -16.48 5.73 -339.42 -1.95 -18.42 16 15 C 0.12 2.24 4.91 86.38 0.42 2.66 16 16 C -0.11 -1.46 5.29 30.59 0.16 -1.30 16 17 C -0.08 -1.00 5.50 30.60 0.17 -0.83 16 18 C -0.16 -1.80 5.73 -10.79 -0.06 -1.86 16 19 C -0.19 -2.15 10.18 30.62 0.31 -1.83 16 20 C -0.18 -2.00 10.25 30.62 0.31 -1.69 16 21 C -0.20 -6.60 9.31 22.40 0.21 -6.40 16 22 C -0.09 -3.58 9.69 22.25 0.22 -3.36 16 23 H 0.27 15.91 8.31 -92.71 -0.77 15.13 16 24 H 0.03 1.24 7.14 -2.39 -0.02 1.22 16 25 H 0.02 1.20 7.51 -2.39 -0.02 1.19 16 26 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 27 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 28 H 0.40 7.26 8.49 -92.71 -0.79 6.47 16 29 H 0.06 1.03 7.96 -2.38 -0.02 1.01 16 30 H 0.05 0.97 7.94 -2.38 -0.02 0.95 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.81 7.88 -2.39 -0.02 0.79 16 35 H 0.11 1.15 8.08 -2.39 -0.02 1.13 16 36 H 0.09 1.09 8.03 -2.38 -0.02 1.07 16 37 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.13 3.71 6.74 -2.91 -0.02 3.69 16 41 H 0.11 4.44 8.06 -2.92 -0.02 4.42 16 Total: -1.00 -69.71 338.45 3.55 -66.16 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.15 Total: 18.18 kcal Atomic # 6 Polarization: -55.32 SS G_CDS: 3.16 Total: -52.16 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -1.65 Total: -79.36 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.18 kcal Total: -69.71 3.55 -66.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902226248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.137 kcal (2) G-P(sol) polarization free energy of solvation -69.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds