Wall clock time and date at job start Mon Mar 30 2020 07:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47450 * 2 1 4 4 N 1.46904 * 109.46851 * 119.99567 * 2 1 3 5 5 C 1.46903 * 111.00074 * 275.00197 * 4 2 1 6 6 C 1.53008 * 109.46771 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.46578 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46840 * 180.02562 * 7 6 5 9 9 H 1.07993 * 120.00186 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00199 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99609 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00056 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47132 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47184 * 119.99641 * 12 10 8 15 15 H 1.48504 * 109.46729 * 239.99347 * 12 10 8 16 16 C 1.50691 * 109.47414 * 239.99517 * 2 1 3 17 17 C 1.38088 * 119.54571 * 84.98135 * 16 2 1 18 18 C 1.39912 * 118.98793 * 180.02562 * 17 16 2 19 19 C 1.43205 * 120.93005 * 180.02562 * 18 17 16 20 20 N 5.97457 * 103.20427 * 275.33780 * 2 1 3 21 21 C 1.39957 * 118.14478 * 0.02562 * 18 17 16 22 22 C 1.38035 * 118.98915 * 359.97438 * 21 18 17 23 23 N 1.31846 * 119.55376 * 264.99971 * 16 2 1 24 24 H 1.08999 * 109.47027 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47265 * 300.00169 * 1 2 3 26 26 H 1.09007 * 109.46448 * 60.00359 * 1 2 3 27 27 H 1.00902 * 111.00274 * 151.04652 * 4 2 1 28 28 H 1.08998 * 109.46787 * 299.99894 * 5 4 2 29 29 H 1.08998 * 109.46706 * 60.00176 * 5 4 2 30 30 H 1.09005 * 109.46871 * 299.99949 * 6 5 4 31 31 H 1.08997 * 109.47014 * 59.99882 * 6 5 4 32 32 H 1.09005 * 109.47278 * 299.99456 * 7 6 5 33 33 H 1.08997 * 109.47743 * 60.00085 * 7 6 5 34 34 H 0.96999 * 119.99608 * 180.02562 * 11 10 8 35 35 H 1.07999 * 120.50465 * 0.02562 * 17 16 2 36 36 H 1.07994 * 120.50460 * 179.97438 * 21 18 17 37 37 H 1.08000 * 119.54786 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2227 2.3470 6 6 2.5961 -0.5328 3.5743 7 6 2.6608 0.4202 4.7695 8 6 3.1674 -0.3237 5.9782 9 1 3.4177 -1.3714 5.9017 10 6 3.3103 0.3331 7.1821 11 7 3.0050 1.6089 7.2754 12 14 3.9389 -0.5889 8.6802 13 1 4.2094 -2.0024 8.3140 14 1 5.1915 0.0462 9.1627 15 1 2.9151 -0.5435 9.7549 16 6 2.0324 -0.7105 -1.2303 17 6 2.1603 -0.0127 -2.4150 18 6 2.6273 -0.6840 -3.5503 19 6 2.7765 -0.0008 -4.8000 20 7 2.8947 0.5411 -5.7914 21 6 2.9447 -2.0418 -3.4304 22 6 2.7863 -2.6604 -2.2067 23 7 2.3434 -1.9898 -1.1610 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8901 27 1 2.9173 -1.1205 1.0289 28 1 2.7588 1.0463 2.1182 29 1 1.0869 0.6164 2.5525 30 1 1.9200 -1.3566 3.8031 31 1 3.5915 -0.9262 3.3684 32 1 3.3367 1.2443 4.5409 33 1 1.6652 0.8132 4.9752 34 1 3.1059 2.0710 8.1222 35 1 1.9038 1.0352 -2.4645 36 1 3.3080 -2.5971 -4.2824 37 1 3.0289 -3.7077 -2.1039 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902791068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:28 Heat of formation + Delta-G solvation = 52.307888 kcal Electronic energy + Delta-G solvation = -17686.240751 eV Core-core repulsion = 14849.177071 eV Total energy + Delta-G solvation = -2837.063680 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.86730 -37.42401 -36.72626 -34.09636 -33.05480 -32.42917 -30.72998 -29.11534 -26.10711 -25.35612 -24.19336 -22.54114 -21.37401 -20.18638 -18.73035 -17.04953 -16.36691 -16.31113 -15.72140 -15.33095 -14.89879 -14.50839 -14.35726 -14.07665 -13.83979 -13.53100 -13.42277 -13.07868 -12.72292 -12.38789 -12.17478 -11.93832 -11.66930 -11.43107 -11.09085 -10.80773 -10.52145 -10.45726 -10.22090 -9.87200 -9.65936 -9.46946 -9.28671 -9.00440 -8.31598 -8.12720 -5.96778 -3.98338 0.20839 0.62185 2.10419 2.56366 3.20501 3.33582 3.40956 3.42914 3.45721 3.83227 4.17520 4.35742 4.46229 4.51007 4.69891 4.91850 5.15536 5.24904 5.29065 5.33511 5.39303 5.50936 5.68023 5.82416 5.86272 5.95630 6.11995 6.25275 6.38711 6.76810 6.80735 6.90586 7.18534 7.32362 7.61116 7.71928 7.73452 7.87941 8.04336 8.47961 9.09336 9.65587 11.14783 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.039860 B = 0.002959 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.290285 B = 9460.471155 C = 9666.612226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.131 3.869 3 H 0.062 0.938 4 N -0.672 5.672 5 C 0.057 3.943 6 C -0.106 4.106 7 C 0.021 3.979 8 C -0.516 4.516 9 H 0.056 0.944 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.139 3.861 17 C -0.123 4.123 18 C 0.020 3.980 19 C 0.254 3.746 20 N -0.401 5.401 21 C -0.134 4.134 22 C 0.110 3.890 23 N -0.441 5.441 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.346 0.654 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.013 0.987 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.334 -5.570 -21.515 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.020 3.980 3 H 0.079 0.921 4 N -0.305 5.305 5 C -0.072 4.072 6 C -0.144 4.144 7 C -0.016 4.016 8 C -0.555 4.555 9 H 0.074 0.926 10 C -0.146 4.146 11 N -0.537 5.537 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.001 3.999 17 C -0.146 4.146 18 C 0.008 3.992 19 C -0.063 4.063 20 N -0.076 5.076 21 C -0.157 4.157 22 C -0.047 4.047 23 N -0.149 5.149 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.165 0.835 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.864 -5.270 -21.956 22.761 hybrid contribution 1.211 0.384 0.146 1.279 sum -1.653 -4.887 -21.810 22.412 Atomic orbital electron populations 1.21789 0.92872 1.03022 1.01691 1.20492 0.96623 0.94710 0.86181 0.92074 1.60512 1.34296 1.32849 1.02798 1.22233 1.00500 0.93658 0.90765 1.21602 0.99349 0.99453 0.93957 1.19074 0.97078 0.94229 0.91232 1.21308 1.43183 0.96469 0.94526 0.92594 1.25035 0.95706 0.94889 0.98974 1.69977 1.49120 1.09030 1.25572 0.86547 0.78470 0.80082 0.82983 1.19704 1.21100 1.21045 1.21438 0.93970 0.90060 0.94479 1.22028 0.98963 1.01789 0.91794 1.16157 1.02147 0.93277 0.87576 1.25493 0.94221 0.93723 0.92813 1.81292 1.07551 1.07930 1.10797 1.22260 0.99937 0.93057 1.00428 1.22899 0.94030 1.00629 0.87143 1.67482 1.07876 1.07923 1.31653 0.91491 0.91341 0.92820 0.83460 0.95864 0.91339 0.92425 0.93680 0.96871 0.96570 0.93136 0.83682 0.83756 0.81398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.40 37.16 0.35 -1.06 16 2 C 0.13 1.46 2.86 -68.87 -0.20 1.26 16 3 H 0.06 0.64 7.77 -51.93 -0.40 0.24 16 4 N -0.67 -9.49 6.05 -107.95 -0.65 -10.14 16 5 C 0.06 0.95 5.48 -3.82 -0.02 0.92 16 6 C -0.11 -2.17 5.41 -26.73 -0.14 -2.31 16 7 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 8 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 9 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 10 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 11 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 12 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.14 1.36 5.70 -82.65 -0.47 0.89 16 17 C -0.12 -0.97 9.51 -39.01 -0.37 -1.34 16 18 C 0.02 0.15 5.76 -106.70 -0.61 -0.47 16 19 C 0.25 2.23 15.41 -22.47 -0.35 1.88 16 20 N -0.40 -4.42 18.54 41.84 0.78 -3.64 16 21 C -0.13 -0.81 9.86 -39.01 -0.38 -1.19 16 22 C 0.11 0.79 11.17 -17.61 -0.20 0.59 16 23 N -0.44 -4.52 9.26 -9.55 -0.09 -4.60 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.76 7.45 -51.93 -0.39 0.37 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.35 4.90 7.84 -39.29 -0.31 4.59 16 28 H 0.02 0.38 8.05 -51.93 -0.42 -0.03 16 29 H 0.07 1.14 7.44 -51.93 -0.39 0.76 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -32.03 325.73 -7.54 -39.57 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.25 Total: -2.50 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.95 Total: -13.98 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.77 Total: -44.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.03 -7.54 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902791068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.878 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds