Wall clock time and date at job start Mon Mar 30 2020 07:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47450 * 2 1 4 4 N 1.46904 * 109.46851 * 119.99567 * 2 1 3 5 5 C 1.46903 * 111.00074 * 275.00197 * 4 2 1 6 6 C 1.53008 * 109.46771 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.46578 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46840 * 180.02562 * 7 6 5 9 9 H 1.07993 * 120.00186 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00199 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99609 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00056 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47132 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47184 * 119.99641 * 12 10 8 15 15 H 1.48504 * 109.46729 * 239.99347 * 12 10 8 16 16 C 1.50691 * 109.47414 * 239.99517 * 2 1 3 17 17 C 1.38088 * 119.54571 * 84.98135 * 16 2 1 18 18 C 1.39912 * 118.98793 * 180.02562 * 17 16 2 19 19 C 1.43205 * 120.93005 * 180.02562 * 18 17 16 20 20 N 5.97457 * 103.20427 * 275.33780 * 2 1 3 21 21 C 1.39957 * 118.14478 * 0.02562 * 18 17 16 22 22 C 1.38035 * 118.98915 * 359.97438 * 21 18 17 23 23 N 1.31846 * 119.55376 * 264.99971 * 16 2 1 24 24 H 1.08999 * 109.47027 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47265 * 300.00169 * 1 2 3 26 26 H 1.09007 * 109.46448 * 60.00359 * 1 2 3 27 27 H 1.00902 * 111.00274 * 151.04652 * 4 2 1 28 28 H 1.08998 * 109.46787 * 299.99894 * 5 4 2 29 29 H 1.08998 * 109.46706 * 60.00176 * 5 4 2 30 30 H 1.09005 * 109.46871 * 299.99949 * 6 5 4 31 31 H 1.08997 * 109.47014 * 59.99882 * 6 5 4 32 32 H 1.09005 * 109.47278 * 299.99456 * 7 6 5 33 33 H 1.08997 * 109.47743 * 60.00085 * 7 6 5 34 34 H 0.96999 * 119.99608 * 180.02562 * 11 10 8 35 35 H 1.07999 * 120.50465 * 0.02562 * 17 16 2 36 36 H 1.07994 * 120.50460 * 179.97438 * 21 18 17 37 37 H 1.08000 * 119.54786 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2227 2.3470 6 6 2.5961 -0.5328 3.5743 7 6 2.6608 0.4202 4.7695 8 6 3.1674 -0.3237 5.9782 9 1 3.4177 -1.3714 5.9017 10 6 3.3103 0.3331 7.1821 11 7 3.0050 1.6089 7.2754 12 14 3.9389 -0.5889 8.6802 13 1 4.2094 -2.0024 8.3140 14 1 5.1915 0.0462 9.1627 15 1 2.9151 -0.5435 9.7549 16 6 2.0324 -0.7105 -1.2303 17 6 2.1603 -0.0127 -2.4150 18 6 2.6273 -0.6840 -3.5503 19 6 2.7765 -0.0008 -4.8000 20 7 2.8947 0.5411 -5.7914 21 6 2.9447 -2.0418 -3.4304 22 6 2.7863 -2.6604 -2.2067 23 7 2.3434 -1.9898 -1.1610 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8901 27 1 2.9173 -1.1205 1.0289 28 1 2.7588 1.0463 2.1182 29 1 1.0869 0.6164 2.5525 30 1 1.9200 -1.3566 3.8031 31 1 3.5915 -0.9262 3.3684 32 1 3.3367 1.2443 4.5409 33 1 1.6652 0.8132 4.9752 34 1 3.1059 2.0710 8.1222 35 1 1.9038 1.0352 -2.4645 36 1 3.3080 -2.5971 -4.2824 37 1 3.0289 -3.7077 -2.1039 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902791068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:27 Heat of formation + Delta-G solvation = 32.139502 kcal Electronic energy + Delta-G solvation = -17687.115318 eV Core-core repulsion = 14849.177071 eV Total energy + Delta-G solvation = -2837.938247 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50242 -38.33420 -37.66963 -35.80356 -34.06507 -33.66717 -31.97285 -30.20641 -27.80049 -26.03138 -25.21744 -23.91025 -22.30846 -21.88482 -19.48543 -18.45516 -17.73865 -16.91866 -16.79346 -16.50425 -16.20669 -15.62531 -15.37111 -15.17011 -14.86038 -14.37567 -14.20728 -14.15248 -14.05151 -13.66575 -13.39671 -13.27977 -12.93972 -12.74945 -12.60669 -12.42119 -12.14296 -12.00425 -11.45678 -11.33705 -11.07317 -10.85670 -10.52955 -10.47737 -10.04330 -9.25426 -8.17778 -6.28115 -0.39498 0.05261 1.41824 1.42140 1.42253 1.55857 1.89977 2.43241 2.54113 2.82260 3.15453 3.16175 3.25305 3.80155 3.87432 4.08531 4.23517 4.31808 4.35155 4.50408 4.56952 4.69518 4.71918 4.79041 4.87685 4.97177 5.01835 5.07057 5.21510 5.28997 5.41146 5.56744 5.58466 5.80613 5.90180 6.13926 6.23909 6.31704 6.56077 6.89285 7.02014 7.40961 8.94346 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.039860 B = 0.002959 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.290285 B = 9460.471155 C = 9666.612226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.129 3.871 3 H 0.069 0.931 4 N -0.675 5.675 5 C 0.071 3.929 6 C -0.091 4.091 7 C 0.025 3.975 8 C -0.541 4.541 9 H 0.058 0.942 10 C -0.002 4.002 11 N -0.934 5.934 12 Si 0.965 3.035 13 H -0.262 1.262 14 H -0.278 1.278 15 H -0.278 1.278 16 C 0.123 3.877 17 C -0.117 4.117 18 C 0.014 3.986 19 C 0.279 3.721 20 N -0.443 5.443 21 C -0.113 4.113 22 C 0.106 3.894 23 N -0.470 5.470 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.346 0.654 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.047 0.953 32 H -0.009 1.009 33 H -0.007 1.007 34 H 0.263 0.737 35 H 0.160 0.840 36 H 0.175 0.825 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 -6.956 -22.434 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.018 3.982 3 H 0.087 0.913 4 N -0.307 5.307 5 C -0.058 4.058 6 C -0.129 4.129 7 C -0.013 4.013 8 C -0.579 4.579 9 H 0.077 0.923 10 C -0.200 4.200 11 N -0.575 5.575 12 Si 0.789 3.211 13 H -0.186 1.186 14 H -0.204 1.204 15 H -0.204 1.204 16 C -0.015 4.015 17 C -0.140 4.140 18 C 0.002 3.998 19 C -0.036 4.036 20 N -0.118 5.118 21 C -0.135 4.135 22 C -0.051 4.051 23 N -0.180 5.180 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.165 0.835 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.009 0.991 33 H 0.011 0.989 34 H 0.072 0.928 35 H 0.177 0.823 36 H 0.192 0.808 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.394 -6.659 -22.893 23.962 hybrid contribution 1.059 0.779 0.384 1.369 sum -1.335 -5.881 -22.509 23.303 Atomic orbital electron populations 1.21757 0.92485 1.02407 1.02315 1.20536 0.96929 0.95072 0.85627 0.91315 1.60426 1.34326 1.32568 1.03399 1.21916 1.00024 0.93436 0.90399 1.21347 0.99597 0.98259 0.93698 1.18977 0.94873 0.94432 0.92969 1.21744 1.43427 0.96863 0.95823 0.92341 1.25986 0.95776 0.95792 1.02421 1.70102 1.50034 1.10692 1.26653 0.85403 0.77971 0.79030 0.78678 1.18622 1.20351 1.20365 1.21154 0.95687 0.90310 0.94347 1.22069 0.98297 1.02412 0.91187 1.16180 1.02916 0.93895 0.86783 1.25542 0.92908 0.92724 0.92453 1.81326 1.09168 1.09197 1.12135 1.22571 0.97658 0.92371 1.00943 1.23346 0.93380 1.01629 0.86719 1.67403 1.08764 1.08353 1.33444 0.92658 0.92478 0.90431 0.83463 0.95818 0.91596 0.93004 0.93429 0.99056 0.98908 0.92812 0.82275 0.80784 0.78855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.40 71.98 0.68 -1.94 16 2 C 0.13 2.74 2.86 44.17 0.13 2.87 16 3 H 0.07 1.36 7.77 -2.38 -0.02 1.34 16 4 N -0.67 -18.72 6.05 -495.43 -3.00 -21.71 16 5 C 0.07 2.38 5.48 86.31 0.47 2.85 16 6 C -0.09 -3.78 5.41 30.60 0.17 -3.62 16 7 C 0.03 1.34 4.97 29.85 0.15 1.49 16 8 C -0.54 -31.24 9.11 25.60 0.23 -31.00 16 9 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 10 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 11 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 12 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 13 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 16 C 0.12 2.22 5.70 42.52 0.24 2.46 16 17 C -0.12 -1.61 9.51 22.64 0.22 -1.39 16 18 C 0.01 0.17 5.76 -21.21 -0.12 0.05 16 19 C 0.28 4.37 15.41 88.33 1.36 5.73 16 20 N -0.44 -9.24 18.54 19.01 0.35 -8.88 16 21 C -0.11 -1.00 9.86 22.64 0.22 -0.78 16 22 C 0.11 1.23 11.17 84.64 0.95 2.18 16 23 N -0.47 -8.85 9.26 -184.13 -1.70 -10.55 16 24 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.25 7.45 -2.39 -0.02 1.23 16 26 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.35 9.58 7.84 -89.69 -0.70 8.88 16 28 H 0.02 0.78 8.05 -2.39 -0.02 0.77 16 29 H 0.07 2.23 7.44 -2.39 -0.02 2.21 16 30 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 33 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 37 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -69.63 325.73 3.48 -66.15 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.36 Total: 6.09 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 5.15 Total: -20.78 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -4.06 Total: -98.15 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.63 3.48 -66.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902791068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.293 kcal (2) G-P(sol) polarization free energy of solvation -69.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds