Wall clock time and date at job start Mon Mar 30 2020 07:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46948 * 2 1 4 4 N 1.46898 * 109.47420 * 239.99390 * 2 1 3 5 5 C 1.46906 * 110.99888 * 85.00182 * 4 2 1 6 6 C 1.52993 * 109.47378 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47473 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47239 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99960 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99798 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99830 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00071 * 0.02562 * 10 8 7 13 13 H 1.48508 * 109.47012 * 89.99724 * 12 10 8 14 14 H 1.48499 * 109.47078 * 209.99436 * 12 10 8 15 15 H 1.48496 * 109.47022 * 329.99978 * 12 10 8 16 16 C 1.50703 * 109.46957 * 119.99617 * 2 1 3 17 17 C 1.38090 * 119.54591 * 274.73314 * 16 2 1 18 18 C 1.39908 * 118.98684 * 179.71639 * 17 16 2 19 19 C 1.43203 * 120.92994 * 180.27566 * 18 17 16 20 20 N 5.97460 * 103.19518 * 84.65719 * 2 1 3 21 21 C 1.39961 * 118.14184 * 0.54318 * 18 17 16 22 22 C 1.38033 * 118.99155 * 359.73502 * 21 18 17 23 23 N 1.31841 * 119.54770 * 95.00398 * 16 2 1 24 24 H 1.09002 * 109.46948 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47372 * 300.00433 * 1 2 3 26 26 H 1.09000 * 109.47137 * 60.01031 * 1 2 3 27 27 H 1.00901 * 111.00121 * 321.04769 * 4 2 1 28 28 H 1.09004 * 109.47040 * 299.99934 * 5 4 2 29 29 H 1.09000 * 109.47033 * 59.99886 * 5 4 2 30 30 H 1.09004 * 109.46862 * 299.99897 * 6 5 4 31 31 H 1.09004 * 109.46998 * 59.99419 * 6 5 4 32 32 H 1.08996 * 109.47261 * 300.00171 * 7 6 5 33 33 H 1.09000 * 109.46870 * 59.99782 * 7 6 5 34 34 H 0.96992 * 120.00108 * 179.97438 * 11 10 8 35 35 H 1.08001 * 120.50364 * 359.97438 * 17 16 2 36 36 H 1.07998 * 120.50410 * 179.76161 * 21 18 17 37 37 H 1.08001 * 119.54930 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0826 0.2224 -2.3469 6 6 2.5952 -0.5333 -3.5744 7 6 2.6600 0.4195 -4.7697 8 6 3.1656 -0.3249 -5.9786 9 1 3.4152 -1.3729 -5.9021 10 6 3.3084 0.3318 -7.1825 11 7 3.7490 -0.3179 -8.2376 12 14 2.8759 2.1442 -7.3150 13 1 4.0764 2.9632 -7.0092 14 1 2.4110 2.4427 -8.6933 15 1 1.7967 2.4675 -6.3475 16 6 2.0323 -0.7103 1.2305 17 6 2.1658 -0.0110 2.4137 18 6 2.6275 -0.6834 3.5504 19 6 2.7760 -0.0002 4.8002 20 7 2.8938 0.5416 5.7916 21 6 2.9455 -2.0411 3.4306 22 6 2.7872 -2.6598 2.2069 23 7 2.3433 -1.9897 1.1613 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.4496 -1.4981 -1.4099 28 1 1.0871 0.6161 -2.5526 29 1 2.7589 1.0461 -2.1182 30 1 3.5905 -0.9274 -3.3689 31 1 1.9185 -1.3568 -3.8028 32 1 1.6646 0.8131 -4.9750 33 1 3.3365 1.2431 -4.5414 34 1 3.8492 0.1439 -9.0847 35 1 1.9137 1.0381 2.4619 36 1 3.3088 -2.5964 4.2827 37 1 3.0295 -3.7073 2.1043 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902791069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:30 Heat of formation + Delta-G solvation = 54.325367 kcal Electronic energy + Delta-G solvation = -17729.519903 eV Core-core repulsion = 14892.543707 eV Total energy + Delta-G solvation = -2836.976195 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.77434 -37.48365 -36.83374 -34.19663 -32.98901 -32.40767 -30.98054 -29.19558 -26.29773 -25.35627 -24.19182 -22.33747 -21.71799 -20.14806 -18.74077 -16.96091 -16.71294 -16.30875 -15.73966 -15.13278 -14.83872 -14.54894 -14.44598 -14.05370 -13.78863 -13.49440 -13.38461 -13.33650 -12.82667 -12.62430 -12.43374 -12.10919 -11.82387 -11.54651 -11.38660 -10.94634 -10.77779 -10.15447 -9.94436 -9.81109 -9.70467 -9.55412 -9.36384 -9.13952 -8.50774 -8.19945 -6.00996 -3.98508 0.27675 0.70136 2.13497 2.61274 3.24549 3.32373 3.39537 3.42752 3.49290 3.93782 4.15496 4.41786 4.47673 4.53265 4.73229 4.90661 4.97385 5.11426 5.25802 5.32821 5.33580 5.49243 5.56938 5.61203 5.72036 5.78772 5.93302 6.20081 6.21921 6.58269 6.60111 6.93746 6.95423 7.18768 7.38087 7.47668 7.61898 7.72852 7.83861 8.58662 9.05143 9.61677 11.12674 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.036998 B = 0.003136 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.609743 B = 8925.859518 C = 9170.794770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.129 3.871 3 H 0.096 0.904 4 N -0.671 5.671 5 C 0.056 3.944 6 C -0.099 4.099 7 C -0.013 4.013 8 C -0.518 4.518 9 H 0.072 0.928 10 C 0.064 3.936 11 N -0.905 5.905 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.266 1.266 16 C 0.157 3.843 17 C -0.127 4.127 18 C 0.018 3.982 19 C 0.255 3.745 20 N -0.404 5.404 21 C -0.137 4.137 22 C 0.109 3.891 23 N -0.436 5.436 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.349 0.651 28 H 0.025 0.975 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.013 0.987 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 -1.400 23.352 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.017 3.983 3 H 0.114 0.886 4 N -0.301 5.301 5 C -0.073 4.073 6 C -0.137 4.137 7 C -0.051 4.051 8 C -0.556 4.556 9 H 0.090 0.910 10 C -0.137 4.137 11 N -0.544 5.544 12 Si 0.708 3.292 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.191 1.191 16 C 0.018 3.982 17 C -0.150 4.150 18 C 0.007 3.993 19 C -0.061 4.061 20 N -0.079 5.079 21 C -0.160 4.160 22 C -0.048 4.048 23 N -0.145 5.145 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.168 0.832 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.051 -0.897 24.045 24.586 hybrid contribution -0.973 1.270 0.071 1.602 sum -6.024 0.373 24.115 24.859 Atomic orbital electron populations 1.22493 0.95575 1.02925 1.02781 1.20446 0.92953 0.96893 0.88006 0.88571 1.60419 1.57139 1.09612 1.02951 1.22219 0.99026 0.95521 0.90523 1.21423 1.00961 0.98566 0.92706 1.19542 0.96300 0.95340 0.93892 1.21165 1.43356 0.98366 0.92702 0.91001 1.25052 0.94732 0.98094 0.95780 1.69917 1.46990 1.36610 1.00917 0.86765 0.79269 0.85974 0.77163 1.20340 1.21494 1.19080 1.21281 0.93381 0.89925 0.93637 1.21980 0.99492 1.01612 0.91887 1.16136 1.02372 0.93283 0.87529 1.25521 0.94125 0.93660 0.92814 1.81283 1.07701 1.08041 1.10850 1.22232 1.00166 0.93082 1.00476 1.22887 0.94257 1.00560 0.87122 1.67481 1.07762 1.08394 1.30827 0.91818 0.92048 0.91345 0.83193 0.95661 0.91558 0.91916 0.92945 0.96883 0.97116 0.92807 0.83889 0.83919 0.81600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 9.14 37.16 0.34 -1.19 16 2 C 0.13 1.29 2.83 -68.87 -0.20 1.10 16 3 H 0.10 0.90 7.77 -51.93 -0.40 0.50 16 4 N -0.67 -8.72 5.79 -107.95 -0.62 -9.34 16 5 C 0.06 0.84 5.48 -3.82 -0.02 0.82 16 6 C -0.10 -1.91 5.41 -26.74 -0.14 -2.05 16 7 C -0.01 -0.30 4.04 -27.89 -0.11 -0.41 16 8 C -0.52 -14.84 9.66 -34.44 -0.33 -15.18 16 9 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 10 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 11 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 12 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 16 C 0.16 1.51 5.89 -82.64 -0.49 1.02 16 17 C -0.13 -0.99 9.51 -39.01 -0.37 -1.36 16 18 C 0.02 0.14 5.76 -106.70 -0.61 -0.48 16 19 C 0.25 2.27 15.41 -22.47 -0.35 1.93 16 20 N -0.40 -4.49 18.54 41.83 0.78 -3.72 16 21 C -0.14 -0.87 9.86 -39.01 -0.38 -1.26 16 22 C 0.11 0.81 11.17 -17.60 -0.20 0.62 16 23 N -0.44 -4.51 9.71 -9.54 -0.09 -4.60 16 24 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.62 7.45 -51.93 -0.39 0.23 16 27 H 0.35 4.49 8.47 -39.29 -0.33 4.16 16 28 H 0.03 0.37 7.44 -51.93 -0.39 -0.02 16 29 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 33 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 322.83 15.07 4.87 4.87 Total: -1.00 -32.60 322.83 -7.18 -39.78 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.24 Total: -2.04 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -2.96 Total: -14.66 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.83 Total: -45.01 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.60 -7.18 -39.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902791069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.105 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds