Wall clock time and date at job start Mon Mar 30 2020 07:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46948 * 2 1 4 4 N 1.46898 * 109.47420 * 239.99390 * 2 1 3 5 5 C 1.46906 * 110.99888 * 85.00182 * 4 2 1 6 6 C 1.52993 * 109.47378 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47473 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47239 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99960 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99798 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99830 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00071 * 0.02562 * 10 8 7 13 13 H 1.48508 * 109.47012 * 89.99724 * 12 10 8 14 14 H 1.48499 * 109.47078 * 209.99436 * 12 10 8 15 15 H 1.48496 * 109.47022 * 329.99978 * 12 10 8 16 16 C 1.50703 * 109.46957 * 119.99617 * 2 1 3 17 17 C 1.38090 * 119.54591 * 274.73314 * 16 2 1 18 18 C 1.39908 * 118.98684 * 179.71639 * 17 16 2 19 19 C 1.43203 * 120.92994 * 180.27566 * 18 17 16 20 20 N 5.97460 * 103.19518 * 84.65719 * 2 1 3 21 21 C 1.39961 * 118.14184 * 0.54318 * 18 17 16 22 22 C 1.38033 * 118.99155 * 359.73502 * 21 18 17 23 23 N 1.31841 * 119.54770 * 95.00398 * 16 2 1 24 24 H 1.09002 * 109.46948 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47372 * 300.00433 * 1 2 3 26 26 H 1.09000 * 109.47137 * 60.01031 * 1 2 3 27 27 H 1.00901 * 111.00121 * 321.04769 * 4 2 1 28 28 H 1.09004 * 109.47040 * 299.99934 * 5 4 2 29 29 H 1.09000 * 109.47033 * 59.99886 * 5 4 2 30 30 H 1.09004 * 109.46862 * 299.99897 * 6 5 4 31 31 H 1.09004 * 109.46998 * 59.99419 * 6 5 4 32 32 H 1.08996 * 109.47261 * 300.00171 * 7 6 5 33 33 H 1.09000 * 109.46870 * 59.99782 * 7 6 5 34 34 H 0.96992 * 120.00108 * 179.97438 * 11 10 8 35 35 H 1.08001 * 120.50364 * 359.97438 * 17 16 2 36 36 H 1.07998 * 120.50410 * 179.76161 * 21 18 17 37 37 H 1.08001 * 119.54930 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0826 0.2224 -2.3469 6 6 2.5952 -0.5333 -3.5744 7 6 2.6600 0.4195 -4.7697 8 6 3.1656 -0.3249 -5.9786 9 1 3.4152 -1.3729 -5.9021 10 6 3.3084 0.3318 -7.1825 11 7 3.7490 -0.3179 -8.2376 12 14 2.8759 2.1442 -7.3150 13 1 4.0764 2.9632 -7.0092 14 1 2.4110 2.4427 -8.6933 15 1 1.7967 2.4675 -6.3475 16 6 2.0323 -0.7103 1.2305 17 6 2.1658 -0.0110 2.4137 18 6 2.6275 -0.6834 3.5504 19 6 2.7760 -0.0002 4.8002 20 7 2.8938 0.5416 5.7916 21 6 2.9455 -2.0411 3.4306 22 6 2.7872 -2.6598 2.2069 23 7 2.3433 -1.9897 1.1613 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.4496 -1.4981 -1.4099 28 1 1.0871 0.6161 -2.5526 29 1 2.7589 1.0461 -2.1182 30 1 3.5905 -0.9274 -3.3689 31 1 1.9185 -1.3568 -3.8028 32 1 1.6646 0.8131 -4.9750 33 1 3.3365 1.2431 -4.5414 34 1 3.8492 0.1439 -9.0847 35 1 1.9137 1.0381 2.4619 36 1 3.3088 -2.5964 4.2827 37 1 3.0295 -3.7073 2.1043 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902791069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:30 Heat of formation + Delta-G solvation = 32.823566 kcal Electronic energy + Delta-G solvation = -17730.452291 eV Core-core repulsion = 14892.543707 eV Total energy + Delta-G solvation = -2837.908583 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39623 -38.36884 -37.68929 -35.79983 -34.11443 -33.60416 -32.19068 -30.20721 -27.83810 -26.00439 -25.04290 -23.67444 -22.57721 -21.80352 -19.46867 -18.85644 -17.61326 -16.84046 -16.72159 -16.29839 -16.13829 -15.55289 -15.34429 -15.18936 -14.68458 -14.64226 -14.39729 -14.17508 -14.07504 -13.71006 -13.55668 -13.34076 -13.04515 -12.65381 -12.53388 -12.45376 -12.10582 -11.75102 -11.50424 -11.37349 -11.23084 -10.78985 -10.72911 -10.39489 -9.96663 -9.17868 -8.25989 -6.30081 -0.33185 0.13330 1.38916 1.40943 1.44629 1.53120 1.94224 2.39695 2.57624 2.87842 3.09428 3.27917 3.34722 3.86873 3.94704 4.11870 4.20959 4.27775 4.35029 4.47592 4.52261 4.70133 4.74077 4.79373 4.85552 4.92787 5.02840 5.06611 5.06853 5.19953 5.27724 5.59026 5.64591 5.68623 5.71357 6.19549 6.26359 6.34576 6.59164 6.78889 7.11968 7.34369 8.91206 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.036998 B = 0.003136 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.609743 B = 8925.859518 C = 9170.794770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 H 0.105 0.895 4 N -0.679 5.679 5 C 0.071 3.929 6 C -0.090 4.090 7 C -0.010 4.010 8 C -0.533 4.533 9 H 0.027 0.973 10 C -0.002 4.002 11 N -0.955 5.955 12 Si 0.956 3.044 13 H -0.267 1.267 14 H -0.286 1.286 15 H -0.242 1.242 16 C 0.139 3.861 17 C -0.121 4.121 18 C 0.011 3.989 19 C 0.280 3.720 20 N -0.445 5.445 21 C -0.120 4.120 22 C 0.101 3.899 23 N -0.467 5.467 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.347 0.653 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.022 0.978 33 H 0.019 0.981 34 H 0.265 0.735 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.717 0.114 25.203 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.017 3.983 3 H 0.123 0.877 4 N -0.310 5.310 5 C -0.058 4.058 6 C -0.128 4.128 7 C -0.048 4.048 8 C -0.571 4.571 9 H 0.046 0.954 10 C -0.198 4.198 11 N -0.596 5.596 12 Si 0.779 3.221 13 H -0.192 1.192 14 H -0.212 1.212 15 H -0.165 1.165 16 C 0.001 3.999 17 C -0.143 4.143 18 C 0.000 4.000 19 C -0.035 4.035 20 N -0.121 5.121 21 C -0.142 4.142 22 C -0.056 4.056 23 N -0.176 5.176 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.166 0.834 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.179 0.821 36 H 0.188 0.812 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.925 0.613 25.928 26.603 hybrid contribution -0.655 0.626 -0.495 1.032 sum -6.580 1.239 25.433 26.299 Atomic orbital electron populations 1.22414 0.94455 1.02732 1.03458 1.20523 0.93884 0.97060 0.86802 0.87697 1.60327 1.58039 1.09515 1.03139 1.21926 0.99394 0.95112 0.89397 1.21243 1.00155 0.97975 0.93457 1.19492 0.96308 0.95746 0.93233 1.21558 1.43343 0.97029 0.95153 0.95417 1.26110 0.94540 1.03934 0.95176 1.70086 1.48644 1.39118 1.01768 0.85578 0.79956 0.78848 0.77754 1.19208 1.21180 1.16511 1.21204 0.94702 0.90054 0.93935 1.22078 0.98668 1.02379 0.91212 1.16179 1.03169 0.93816 0.86885 1.25570 0.92824 0.92666 0.92455 1.81316 1.09304 1.09331 1.12131 1.22507 0.98239 0.92566 1.00913 1.23289 0.93889 1.01514 0.86867 1.67421 1.08685 1.09057 1.32462 0.92450 0.90203 0.91750 0.83368 0.94519 0.91058 0.93687 0.93673 0.95996 0.96259 0.92582 0.82128 0.81223 0.79425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.14 71.98 0.66 -1.91 16 2 C 0.13 2.33 2.83 44.17 0.13 2.45 16 3 H 0.11 1.69 7.77 -2.39 -0.02 1.68 16 4 N -0.68 -16.81 5.79 -495.44 -2.87 -19.68 16 5 C 0.07 2.01 5.48 86.30 0.47 2.49 16 6 C -0.09 -3.48 5.41 30.59 0.17 -3.31 16 7 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 8 C -0.53 -31.26 9.66 25.60 0.25 -31.01 16 9 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 10 C 0.00 -0.09 5.47 84.66 0.46 0.37 16 11 N -0.96 -60.89 13.96 21.45 0.30 -60.59 16 12 Si 0.96 44.24 27.47 68.60 1.88 46.12 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 14 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 15 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 16 C 0.14 2.43 5.89 42.52 0.25 2.68 16 17 C -0.12 -1.61 9.51 22.64 0.22 -1.39 16 18 C 0.01 0.14 5.76 -21.21 -0.12 0.02 16 19 C 0.28 4.46 15.41 88.33 1.36 5.82 16 20 N -0.45 -9.35 18.54 19.00 0.35 -9.00 16 21 C -0.12 -1.20 9.86 22.64 0.22 -0.98 16 22 C 0.10 1.30 11.17 84.64 0.95 2.24 16 23 N -0.47 -8.95 9.71 -184.11 -1.79 -10.74 16 24 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 1.02 7.45 -2.39 -0.02 1.00 16 27 H 0.35 8.70 8.47 -89.69 -0.76 7.94 16 28 H 0.04 0.97 7.44 -2.38 -0.02 0.95 16 29 H 0.07 1.98 8.06 -2.39 -0.02 1.96 16 30 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 33 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 34 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 35 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 36 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 37 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -72.05 322.83 3.26 -68.78 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.25 Total: 7.97 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 5.13 Total: -22.87 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -4.00 Total: -100.00 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Total: -72.05 3.26 -68.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902791069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.607 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds