Wall clock time and date at job start Mon Mar 30 2020 07:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47206 * 2 1 4 4 H 1.08999 * 109.47153 * 178.78153 * 3 2 1 5 5 C 1.50699 * 109.47273 * 298.77939 * 3 2 1 6 6 H 1.07999 * 119.99932 * 114.87250 * 5 3 2 7 7 C 1.37875 * 120.00038 * 294.88156 * 5 3 2 8 8 N 1.31521 * 120.00044 * 354.76620 * 7 5 3 9 9 Si 1.86797 * 120.00279 * 174.77319 * 7 5 3 10 10 H 1.48504 * 109.47416 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47049 * 299.99796 * 9 7 5 12 12 H 1.48499 * 109.47350 * 59.99435 * 9 7 5 13 13 N 1.46903 * 109.47211 * 58.77982 * 3 2 1 14 14 C 1.46425 * 110.99588 * 192.88758 * 13 3 2 15 15 C 1.53371 * 108.66401 * 287.85522 * 14 13 3 16 16 C 1.53046 * 107.94103 * 291.79337 * 15 14 13 17 17 C 1.50801 * 109.66435 * 47.28956 * 16 15 14 18 18 C 1.38612 * 118.12274 * 164.69621 * 17 16 15 19 19 C 1.38054 * 120.48468 * 179.36828 * 18 17 16 20 20 C 1.50707 * 120.05784 * 179.97438 * 19 18 17 21 21 C 1.38313 * 119.89153 * 359.97438 * 19 18 17 22 22 C 1.37809 * 119.94816 * 0.14609 * 21 19 18 23 23 C 1.38376 * 122.01064 * 344.29566 * 17 16 15 24 24 H 1.09000 * 109.47420 * 65.28401 * 1 2 3 25 25 H 1.09000 * 109.47821 * 185.29247 * 1 2 3 26 26 H 1.09002 * 109.47142 * 305.28543 * 1 2 3 27 27 H 1.08998 * 109.47041 * 239.99764 * 2 1 3 28 28 H 1.09002 * 109.46695 * 120.00381 * 2 1 3 29 29 H 0.96996 * 119.99947 * 354.77992 * 8 7 5 30 30 H 1.08997 * 109.60995 * 47.60837 * 14 13 3 31 31 H 1.09004 * 109.60397 * 168.10263 * 14 13 3 32 32 H 1.09001 * 109.77468 * 172.17675 * 15 14 13 33 33 H 1.09004 * 109.79817 * 51.42225 * 15 14 13 34 34 H 1.08999 * 109.44062 * 287.22705 * 16 15 14 35 35 H 1.09010 * 109.43712 * 167.34781 * 16 15 14 36 36 H 1.07997 * 119.76353 * 359.31357 * 18 17 16 37 37 H 1.08996 * 109.46770 * 270.02326 * 20 19 18 38 38 H 1.09002 * 109.46709 * 30.01394 * 20 19 18 39 39 H 1.08997 * 109.47124 * 150.01978 * 20 19 18 40 40 H 1.07999 * 120.02962 * 180.11659 * 21 19 18 41 41 H 1.08006 * 119.78878 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 0.0219 5 6 1.5626 2.1441 -1.2453 6 1 0.8734 2.9721 -1.1680 7 6 2.0053 1.7289 -2.4832 8 7 2.9218 0.7899 -2.5729 9 14 1.3038 2.5002 -4.0332 10 1 1.9412 1.8845 -5.2248 11 1 -0.1624 2.2697 -4.0808 12 1 1.5753 3.9602 -4.0261 13 7 1.5264 2.1434 1.1844 14 6 1.7330 3.5885 1.0695 15 6 3.2275 3.8860 1.2437 16 6 3.6026 3.5817 2.6959 17 6 3.0435 2.2389 3.0939 18 6 3.5360 1.6407 4.2432 19 6 3.0495 0.4177 4.6597 20 6 3.5922 -0.2242 5.9106 21 6 2.0632 -0.2175 3.9272 22 6 1.5705 0.3700 2.7821 23 6 2.0606 1.6052 2.3541 24 1 -0.3634 0.4297 -0.9335 25 1 -0.3635 -1.0232 0.0948 26 1 -0.3633 0.5936 0.8389 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.3408 0.4429 -1.7699 30 1 1.4047 3.9280 0.0872 31 1 1.1651 4.1020 1.8453 32 1 3.4225 4.9358 1.0247 33 1 3.8102 3.2550 0.5725 34 1 3.1907 4.3534 3.3463 35 1 4.6881 3.5664 2.7946 36 1 4.3064 2.1345 4.8167 37 1 4.4437 -0.8549 5.6551 38 1 3.9104 0.5507 6.6079 39 1 2.8152 -0.8327 6.3732 40 1 1.6797 -1.1735 4.2520 41 1 0.8006 -0.1285 2.2118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:10 Heat of formation + Delta-G solvation = 20.557260 kcal Electronic energy + Delta-G solvation = -20396.719667 eV Core-core repulsion = 17661.819520 eV Total energy + Delta-G solvation = -2734.900147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.20926 -37.09251 -34.85871 -32.71200 -31.44660 -30.71503 -29.48956 -26.81565 -25.84939 -24.09770 -23.33498 -21.89794 -21.53189 -20.11073 -18.48337 -16.57030 -15.86342 -15.68380 -15.16272 -14.25232 -13.97475 -13.75336 -13.66507 -13.44457 -13.17337 -13.07305 -12.62961 -12.16250 -12.08740 -11.90943 -11.87187 -11.44275 -11.14256 -10.87307 -10.80617 -10.65907 -10.49936 -10.13453 -10.06405 -9.98361 -9.95870 -9.72335 -8.70851 -8.44951 -8.25476 -8.13813 -6.98463 -6.37602 -4.10597 1.82151 1.86418 3.40789 3.42892 3.60921 4.13888 4.47977 4.75917 5.07384 5.17842 5.32978 5.33663 5.43945 5.47353 5.53080 5.71417 5.72627 5.83015 5.95012 6.05611 6.09722 6.13699 6.24855 6.27394 6.36308 6.44160 6.49700 6.50870 6.65817 6.78766 6.81559 6.90853 6.99625 7.01652 7.13082 7.15596 7.31658 7.42640 7.51599 7.91218 7.93142 8.40748 8.53847 8.81365 9.58239 10.97407 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027497 B = 0.006876 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.060772 B = 4071.267538 C = 4617.857182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.126 4.126 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.586 4.586 6 H 0.060 0.940 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.490 5.490 14 C 0.062 3.938 15 C -0.152 4.152 16 C -0.074 4.074 17 C -0.129 4.129 18 C -0.108 4.108 19 C -0.123 4.123 20 C -0.104 4.104 21 C -0.116 4.116 22 C -0.127 4.127 23 C 0.132 3.868 24 H 0.059 0.941 25 H 0.021 0.979 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.270 0.730 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.114 0.886 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 1.519 11.755 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.016 0.984 5 C -0.624 4.624 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.545 5.545 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.205 5.205 14 C -0.066 4.066 15 C -0.191 4.191 16 C -0.111 4.111 17 C -0.132 4.132 18 C -0.126 4.126 19 C -0.124 4.124 20 C -0.161 4.161 21 C -0.134 4.134 22 C -0.146 4.146 23 C 0.034 3.966 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.441 1.379 10.021 10.125 hybrid contribution 0.807 0.190 1.702 1.894 sum 0.366 1.569 11.723 11.834 Atomic orbital electron populations 1.21514 0.96410 0.97889 1.02433 1.21877 0.96349 0.98345 0.99823 1.19389 0.92482 0.90899 0.85991 0.98431 1.21871 1.30442 1.18980 0.91137 0.92166 1.25688 0.95495 0.95540 1.01301 1.70783 1.24443 1.26195 1.33119 0.83613 0.75892 0.75513 0.75762 1.20889 1.21360 1.21519 1.58687 1.56103 1.04266 1.01428 1.22183 0.93537 0.87607 1.03249 1.22106 0.99770 1.01587 0.95649 1.20480 0.99774 0.93612 0.97203 1.19955 0.96954 0.98612 0.97672 1.20700 1.00186 0.95333 0.96408 1.19622 0.98974 0.95782 0.97978 1.20658 1.00577 1.00082 0.94753 1.20784 0.97668 0.99508 0.95458 1.21435 1.01310 0.95659 0.96237 1.18798 0.91211 0.93681 0.92960 0.92148 0.96027 0.92863 0.91499 0.94585 0.91815 0.87852 0.92705 0.91750 0.90901 0.91501 0.91578 0.87137 0.91969 0.92289 0.92143 0.86772 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.53 37.16 0.32 -2.34 16 2 C -0.13 -2.90 4.79 -26.73 -0.13 -3.03 16 3 C 0.22 5.20 0.98 -68.87 -0.07 5.13 16 4 H 0.00 -0.05 6.39 -51.93 -0.33 -0.38 16 5 C -0.59 -15.17 6.50 -34.44 -0.22 -15.39 16 6 H 0.06 1.56 6.06 -52.49 -0.32 1.24 16 7 C 0.02 0.66 5.26 -17.82 -0.09 0.56 16 8 N -0.91 -26.19 12.84 55.43 0.71 -25.48 16 9 Si 1.06 24.20 29.91 -169.99 -5.08 19.12 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.49 -10.48 3.53 -165.07 -0.58 -11.06 16 14 C 0.06 1.21 5.53 -3.89 -0.02 1.19 16 15 C -0.15 -2.75 6.03 -26.52 -0.16 -2.91 16 16 C -0.07 -1.19 5.81 -27.81 -0.16 -1.35 16 17 C -0.13 -2.33 5.74 -104.38 -0.60 -2.93 16 18 C -0.11 -1.72 9.29 -39.51 -0.37 -2.09 16 19 C -0.12 -1.86 5.88 -104.66 -0.62 -2.48 16 20 C -0.10 -1.19 10.02 36.01 0.36 -0.83 16 21 C -0.12 -1.87 9.69 -39.71 -0.38 -2.25 16 22 C -0.13 -2.37 7.47 -39.23 -0.29 -2.66 16 23 C 0.13 2.63 5.06 -83.85 -0.42 2.21 16 24 H 0.06 1.38 7.45 -51.93 -0.39 1.00 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 1.10 6.44 -51.93 -0.33 0.77 16 27 H 0.07 1.71 6.22 -51.93 -0.32 1.38 16 28 H 0.04 0.78 5.16 -51.93 -0.27 0.52 16 29 H 0.27 7.85 6.07 -40.82 -0.25 7.61 16 30 H 0.10 2.18 5.42 -51.93 -0.28 1.90 16 31 H 0.05 0.99 8.11 -51.93 -0.42 0.57 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.54 6.69 -51.93 -0.35 1.19 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.14 2.54 4.53 -52.48 -0.24 2.30 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -28.02 305.68 -9.30 -37.32 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.09 Total: 4.65 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -2.86 Total: -29.16 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.13 Total: -36.54 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.08 Total: 19.12 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.02 -9.30 -37.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.879 kcal (2) G-P(sol) polarization free energy of solvation -28.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds