Wall clock time and date at job start Mon Mar 30 2020 07:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47206 * 2 1 4 4 H 1.08999 * 109.47153 * 178.78153 * 3 2 1 5 5 C 1.50699 * 109.47273 * 298.77939 * 3 2 1 6 6 H 1.07999 * 119.99932 * 114.87250 * 5 3 2 7 7 C 1.37875 * 120.00038 * 294.88156 * 5 3 2 8 8 N 1.31521 * 120.00044 * 354.76620 * 7 5 3 9 9 Si 1.86797 * 120.00279 * 174.77319 * 7 5 3 10 10 H 1.48504 * 109.47416 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47049 * 299.99796 * 9 7 5 12 12 H 1.48499 * 109.47350 * 59.99435 * 9 7 5 13 13 N 1.46903 * 109.47211 * 58.77982 * 3 2 1 14 14 C 1.46425 * 110.99588 * 192.88758 * 13 3 2 15 15 C 1.53371 * 108.66401 * 287.85522 * 14 13 3 16 16 C 1.53046 * 107.94103 * 291.79337 * 15 14 13 17 17 C 1.50801 * 109.66435 * 47.28956 * 16 15 14 18 18 C 1.38612 * 118.12274 * 164.69621 * 17 16 15 19 19 C 1.38054 * 120.48468 * 179.36828 * 18 17 16 20 20 C 1.50707 * 120.05784 * 179.97438 * 19 18 17 21 21 C 1.38313 * 119.89153 * 359.97438 * 19 18 17 22 22 C 1.37809 * 119.94816 * 0.14609 * 21 19 18 23 23 C 1.38376 * 122.01064 * 344.29566 * 17 16 15 24 24 H 1.09000 * 109.47420 * 65.28401 * 1 2 3 25 25 H 1.09000 * 109.47821 * 185.29247 * 1 2 3 26 26 H 1.09002 * 109.47142 * 305.28543 * 1 2 3 27 27 H 1.08998 * 109.47041 * 239.99764 * 2 1 3 28 28 H 1.09002 * 109.46695 * 120.00381 * 2 1 3 29 29 H 0.96996 * 119.99947 * 354.77992 * 8 7 5 30 30 H 1.08997 * 109.60995 * 47.60837 * 14 13 3 31 31 H 1.09004 * 109.60397 * 168.10263 * 14 13 3 32 32 H 1.09001 * 109.77468 * 172.17675 * 15 14 13 33 33 H 1.09004 * 109.79817 * 51.42225 * 15 14 13 34 34 H 1.08999 * 109.44062 * 287.22705 * 16 15 14 35 35 H 1.09010 * 109.43712 * 167.34781 * 16 15 14 36 36 H 1.07997 * 119.76353 * 359.31357 * 18 17 16 37 37 H 1.08996 * 109.46770 * 270.02326 * 20 19 18 38 38 H 1.09002 * 109.46709 * 30.01394 * 20 19 18 39 39 H 1.08997 * 109.47124 * 150.01978 * 20 19 18 40 40 H 1.07999 * 120.02962 * 180.11659 * 21 19 18 41 41 H 1.08006 * 119.78878 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 0.0219 5 6 1.5626 2.1441 -1.2453 6 1 0.8734 2.9721 -1.1680 7 6 2.0053 1.7289 -2.4832 8 7 2.9218 0.7899 -2.5729 9 14 1.3038 2.5002 -4.0332 10 1 1.9412 1.8845 -5.2248 11 1 -0.1624 2.2697 -4.0808 12 1 1.5753 3.9602 -4.0261 13 7 1.5264 2.1434 1.1844 14 6 1.7330 3.5885 1.0695 15 6 3.2275 3.8860 1.2437 16 6 3.6026 3.5817 2.6959 17 6 3.0435 2.2389 3.0939 18 6 3.5360 1.6407 4.2432 19 6 3.0495 0.4177 4.6597 20 6 3.5922 -0.2242 5.9106 21 6 2.0632 -0.2175 3.9272 22 6 1.5705 0.3700 2.7821 23 6 2.0606 1.6052 2.3541 24 1 -0.3634 0.4297 -0.9335 25 1 -0.3635 -1.0232 0.0948 26 1 -0.3633 0.5936 0.8389 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.3408 0.4429 -1.7699 30 1 1.4047 3.9280 0.0872 31 1 1.1651 4.1020 1.8453 32 1 3.4225 4.9358 1.0247 33 1 3.8102 3.2550 0.5725 34 1 3.1907 4.3534 3.3463 35 1 4.6881 3.5664 2.7946 36 1 4.3064 2.1345 4.8167 37 1 4.4437 -0.8549 5.6551 38 1 3.9104 0.5507 6.6079 39 1 2.8152 -0.8327 6.3732 40 1 1.6797 -1.1735 4.2520 41 1 0.8006 -0.1285 2.2118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:10 Heat of formation + Delta-G solvation = 6.816907 kcal Electronic energy + Delta-G solvation = -20397.315494 eV Core-core repulsion = 17661.819520 eV Total energy + Delta-G solvation = -2735.495973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67176 -38.55442 -36.50470 -34.43381 -32.75472 -32.46966 -30.88149 -28.32362 -27.42017 -25.90348 -24.84601 -23.38311 -22.88488 -21.88631 -19.99436 -18.44657 -17.44649 -17.12425 -16.64329 -15.82476 -15.67040 -15.32364 -15.21327 -14.80162 -14.63434 -14.28288 -14.02892 -13.78837 -13.54509 -13.35924 -13.17886 -12.97526 -12.70066 -12.61121 -12.36997 -12.10904 -12.02227 -11.95230 -11.74388 -11.69091 -11.47597 -11.44938 -10.56112 -10.40331 -9.84620 -9.52894 -8.54392 -8.51415 -6.25810 0.49626 0.53311 1.54652 1.61269 1.79736 2.57660 2.81232 3.18505 3.27096 3.81306 3.90963 4.04622 4.12852 4.15498 4.31655 4.41150 4.48949 4.50252 4.52666 4.64956 4.68162 4.79240 4.85726 4.89247 4.92639 4.96476 5.02649 5.08104 5.17014 5.22871 5.24910 5.31183 5.37423 5.47466 5.53930 5.61305 5.65534 5.76291 5.93780 6.07476 6.17524 6.49178 6.57602 6.91047 7.51052 8.81022 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027497 B = 0.006876 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.060772 B = 4071.267538 C = 4617.857182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.118 4.118 3 C 0.227 3.773 4 H -0.045 1.045 5 C -0.581 4.581 6 H 0.058 0.942 7 C -0.024 4.024 8 N -0.937 5.937 9 Si 1.107 2.893 10 H -0.290 1.290 11 H -0.273 1.273 12 H -0.271 1.271 13 N -0.495 5.495 14 C 0.059 3.941 15 C -0.146 4.146 16 C -0.069 4.069 17 C -0.141 4.141 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.102 4.102 21 C -0.120 4.120 22 C -0.143 4.143 23 C 0.092 3.908 24 H 0.038 0.962 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.255 0.745 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.031 0.969 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.139 0.861 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.140 0.860 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 1.976 14.171 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.157 4.157 3 C 0.123 3.877 4 H -0.028 1.028 5 C -0.619 4.619 6 H 0.076 0.924 7 C -0.222 4.222 8 N -0.575 5.575 9 Si 0.930 3.070 10 H -0.216 1.216 11 H -0.198 1.198 12 H -0.197 1.197 13 N -0.210 5.210 14 C -0.068 4.068 15 C -0.185 4.185 16 C -0.105 4.105 17 C -0.144 4.144 18 C -0.131 4.131 19 C -0.116 4.116 20 C -0.159 4.159 21 C -0.139 4.139 22 C -0.162 4.162 23 C -0.006 4.006 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.157 0.843 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.157 0.843 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.623 1.846 12.480 12.631 hybrid contribution 0.907 0.025 1.108 1.432 sum 0.285 1.871 13.588 13.719 Atomic orbital electron populations 1.21372 0.94740 0.99394 1.01379 1.21750 0.97653 0.97516 0.98758 1.19072 0.89840 0.91742 0.87068 1.02805 1.22104 1.29337 1.18489 0.91982 0.92384 1.26970 0.95263 0.95418 1.04578 1.70896 1.26217 1.28090 1.32277 0.83048 0.75968 0.75645 0.72315 1.21569 1.19801 1.19656 1.58638 1.56653 1.04718 1.01024 1.22182 0.94884 0.87125 1.02611 1.22008 0.97993 1.01988 0.96536 1.20502 1.00742 0.93526 0.95769 1.20265 0.96553 0.99389 0.98196 1.21057 1.00494 0.95729 0.95839 1.20132 0.97536 0.95215 0.98677 1.20734 1.01269 1.00756 0.93123 1.21115 0.97731 1.00419 0.94593 1.21506 1.01694 0.95594 0.97448 1.18990 0.93402 0.95116 0.93053 0.94286 0.93507 0.92332 0.94580 0.93490 0.93418 0.90040 0.90780 0.89496 0.95028 0.88987 0.90098 0.84319 0.90942 0.90541 0.90603 0.84257 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 8.53 71.98 0.61 -4.18 16 2 C -0.12 -5.69 4.79 30.59 0.15 -5.54 16 3 C 0.23 11.47 0.98 44.17 0.04 11.52 16 4 H -0.05 -2.64 6.39 -2.39 -0.02 -2.66 16 5 C -0.58 -31.20 6.50 25.60 0.17 -31.03 16 6 H 0.06 3.10 6.06 -2.91 -0.02 3.08 16 7 C -0.02 -1.33 5.26 84.65 0.44 -0.88 16 8 N -0.94 -56.42 12.84 21.45 0.28 -56.15 16 9 Si 1.11 49.55 29.91 68.60 2.05 51.60 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 N -0.49 -21.65 3.53 -676.15 -2.38 -24.03 16 14 C 0.06 2.36 5.53 86.52 0.48 2.84 16 15 C -0.15 -5.31 6.03 30.73 0.19 -5.12 16 16 C -0.07 -2.10 5.81 29.90 0.17 -1.92 16 17 C -0.14 -4.92 5.74 -19.71 -0.11 -5.03 16 18 C -0.11 -3.28 9.29 22.32 0.21 -3.07 16 19 C -0.11 -3.13 5.88 -19.89 -0.12 -3.25 16 20 C -0.10 -1.90 10.02 71.24 0.71 -1.18 16 21 C -0.12 -3.63 9.69 22.19 0.22 -3.41 16 22 C -0.14 -5.27 7.47 22.50 0.17 -5.10 16 23 C 0.09 3.66 5.06 38.30 0.19 3.85 16 24 H 0.04 1.81 7.45 -2.39 -0.02 1.79 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 2.43 6.44 -2.39 -0.02 2.42 16 27 H 0.04 1.93 6.22 -2.39 -0.01 1.92 16 28 H 0.05 2.12 5.16 -2.39 -0.01 2.10 16 29 H 0.26 15.80 6.07 -92.71 -0.56 15.24 16 30 H 0.08 3.54 5.42 -2.39 -0.01 3.52 16 31 H 0.07 2.63 8.11 -2.38 -0.02 2.61 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.03 1.39 6.69 -2.39 -0.02 1.37 16 34 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 39 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 40 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 41 H 0.13 4.72 4.53 -2.91 -0.01 4.71 16 Total: -1.00 -63.44 305.68 4.68 -58.75 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 1.22 Total: 21.34 kcal Atomic # 6 Polarization: -55.04 SS G_CDS: 3.52 Total: -51.52 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -2.11 Total: -80.18 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.05 Total: 51.60 kcal Total: -63.44 4.68 -58.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.570 kcal (2) G-P(sol) polarization free energy of solvation -63.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds