Wall clock time and date at job start Mon Mar 30 2020 07:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47461 * 2 1 4 4 H 1.08997 * 109.47056 * 180.08577 * 3 2 1 5 5 C 1.50697 * 109.46865 * 300.09195 * 3 2 1 6 6 H 1.07999 * 119.99899 * 115.96906 * 5 3 2 7 7 C 1.37886 * 120.00039 * 295.96129 * 5 3 2 8 8 N 1.31519 * 119.99578 * 353.53928 * 7 5 3 9 9 Si 1.86797 * 119.99795 * 173.81221 * 7 5 3 10 10 H 1.48491 * 109.47116 * 269.72481 * 9 7 5 11 11 H 1.48502 * 109.47223 * 29.72796 * 9 7 5 12 12 H 1.48506 * 109.46961 * 149.72776 * 9 7 5 13 13 N 1.46497 * 109.46591 * 60.08757 * 3 2 1 14 14 C 1.39676 * 119.99740 * 82.59766 * 13 3 2 15 15 C 1.38654 * 119.81233 * 3.26778 * 14 13 3 16 16 C 1.38087 * 119.69210 * 179.78121 * 15 14 13 17 17 C 1.38023 * 119.85449 * 0.64569 * 16 15 14 18 18 C 1.38926 * 120.69999 * 359.74119 * 17 16 15 19 19 C 1.37578 * 119.73373 * 359.71818 * 18 17 16 20 20 C 1.50617 * 122.59373 * 180.80035 * 19 18 17 21 21 C 1.52727 * 110.60232 * 342.01667 * 20 19 18 22 22 C 1.53333 * 108.39933 * 51.07373 * 21 20 19 23 23 C 1.50644 * 117.72822 * 179.40397 * 18 17 16 24 24 H 1.09000 * 109.46964 * 185.14938 * 1 2 3 25 25 H 1.09000 * 109.46875 * 305.14379 * 1 2 3 26 26 H 1.09002 * 109.47282 * 65.14453 * 1 2 3 27 27 H 1.09009 * 109.46833 * 240.00273 * 2 1 3 28 28 H 1.09002 * 109.47247 * 120.00363 * 2 1 3 29 29 H 0.96990 * 120.00106 * 355.42111 * 8 7 5 30 30 H 0.97001 * 119.99957 * 262.59001 * 13 3 2 31 31 H 1.08004 * 120.15208 * 0.03320 * 15 14 13 32 32 H 1.08002 * 120.07411 * 180.40342 * 16 15 14 33 33 H 1.07996 * 119.65120 * 179.76338 * 17 16 15 34 34 H 1.08993 * 109.25066 * 102.30623 * 20 19 18 35 35 H 1.09002 * 109.24970 * 221.73225 * 20 19 18 36 36 H 1.09003 * 109.68412 * 291.35121 * 21 20 19 37 37 H 1.09000 * 109.68063 * 170.79468 * 21 20 19 38 38 H 1.09002 * 109.68085 * 170.49651 * 22 21 20 39 39 H 1.08992 * 109.67924 * 49.94487 * 22 21 20 40 40 H 1.08997 * 109.25229 * 282.49645 * 23 18 17 41 41 H 1.09001 * 109.24932 * 41.92919 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4424 -0.0015 5 6 1.5359 2.1535 -1.2293 6 1 0.8626 2.9921 -1.1301 7 6 1.9344 1.7336 -2.4808 8 7 2.8506 0.7975 -2.5994 9 14 1.1783 2.4996 -4.0075 10 1 -0.0222 1.7230 -4.4082 11 1 0.7861 3.9018 -3.7155 12 1 2.1702 2.4829 -5.1126 13 7 1.5535 2.1324 1.1972 14 6 2.2284 1.9847 2.4112 15 6 3.3964 1.2395 2.4642 16 6 4.0641 1.0989 3.6647 17 6 3.5584 1.6889 4.8054 18 6 2.3841 2.4299 4.7598 19 6 1.7200 2.5831 3.5647 20 6 0.4525 3.3868 3.4380 21 6 -0.1903 3.5960 4.8076 22 6 0.8758 4.1435 5.7640 23 6 1.8853 3.0329 6.0470 24 1 -0.3633 -1.0235 0.0922 25 1 -0.3633 0.5916 0.8403 26 1 -0.3634 0.4320 -0.9325 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 3.2936 0.4497 -1.8098 30 1 0.7626 2.6918 1.1469 31 1 3.7844 0.7746 1.5699 32 1 4.9780 0.5252 3.7118 33 1 4.0812 1.5736 5.7433 34 1 0.6844 4.3566 2.9980 35 1 -0.2460 2.8567 2.7905 36 1 -0.5684 2.6457 5.1847 37 1 -1.0094 4.3102 4.7234 38 1 0.4060 4.4587 6.6957 39 1 1.3823 4.9912 5.3026 40 1 1.4079 2.2573 6.6459 41 1 2.7284 3.4460 6.6007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036678824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:42 Heat of formation + Delta-G solvation = -6.316569 kcal Electronic energy + Delta-G solvation = -19764.755585 eV Core-core repulsion = 17028.690101 eV Total energy + Delta-G solvation = -2736.065484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77486 -36.87550 -35.36637 -33.39277 -31.36999 -30.12689 -29.79357 -27.62573 -25.68317 -23.90387 -23.43439 -22.29047 -21.08970 -19.59811 -18.87829 -17.42106 -16.39166 -15.30866 -15.14391 -14.47747 -14.01874 -13.85793 -13.72721 -13.69808 -13.18505 -13.01504 -12.95959 -12.65253 -12.12124 -11.97700 -11.60705 -11.41589 -11.29956 -11.05892 -10.87704 -10.80549 -10.45454 -10.31809 -10.22791 -10.19224 -10.03359 -9.81916 -9.23819 -8.62047 -8.42661 -8.07624 -6.54428 -6.46637 -4.21557 1.92629 2.20983 3.36830 3.39241 3.54937 4.33288 4.37111 4.52528 4.85510 4.93032 4.99341 5.24755 5.36855 5.44439 5.53983 5.65248 5.69087 5.72511 5.88386 5.94233 6.04873 6.09282 6.13299 6.14470 6.22662 6.27753 6.35254 6.39345 6.44330 6.61153 6.78272 6.91009 6.98736 7.05784 7.13565 7.17745 7.26953 7.34457 7.50639 7.84500 8.06523 8.46480 8.66140 8.77215 9.48218 10.88305 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.005627 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.992229 B = 4974.914392 C = 5441.382746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.135 4.135 3 C 0.261 3.739 4 H 0.029 0.971 5 C -0.603 4.603 6 H 0.053 0.947 7 C 0.029 3.971 8 N -0.905 5.905 9 Si 1.069 2.931 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.284 1.284 13 N -0.717 5.717 14 C 0.238 3.762 15 C -0.210 4.210 16 C -0.071 4.071 17 C -0.206 4.206 18 C -0.034 4.034 19 C -0.171 4.171 20 C -0.069 4.069 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.077 4.077 24 H 0.025 0.975 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.272 0.728 30 H 0.391 0.609 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 3.273 13.696 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.174 4.174 3 C 0.158 3.842 4 H 0.047 0.953 5 C -0.641 4.641 6 H 0.072 0.928 7 C -0.177 4.177 8 N -0.540 5.540 9 Si 0.897 3.103 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.210 1.210 13 N -0.339 5.339 14 C 0.128 3.872 15 C -0.233 4.233 16 C -0.090 4.090 17 C -0.227 4.227 18 C -0.034 4.034 19 C -0.176 4.176 20 C -0.107 4.107 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.114 4.114 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.226 0.774 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.109 3.087 11.803 12.590 hybrid contribution -0.154 0.153 1.567 1.582 sum -3.263 3.241 13.370 14.139 Atomic orbital electron populations 1.21474 0.96858 0.98329 1.01494 1.21971 0.96102 0.99638 0.99679 1.18785 0.94372 0.88691 0.82387 0.95313 1.21953 1.32414 1.18136 0.91635 0.92842 1.25693 0.95543 0.95467 1.00975 1.70765 1.22990 1.26347 1.33932 0.83540 0.75991 0.75424 0.75341 1.21316 1.21507 1.20975 1.45388 1.30379 1.51761 1.06402 1.18024 0.90897 0.91973 0.86265 1.20645 0.97326 1.06714 0.98662 1.20693 0.98274 0.97629 0.92414 1.20620 0.98778 1.05324 0.97993 1.19172 0.94283 0.96605 0.93368 1.18919 0.99743 1.06865 0.92036 1.20188 0.94296 0.98962 0.97204 1.21490 0.97428 1.00895 0.95403 1.21524 0.96786 0.98106 0.99097 1.20420 0.98560 0.97538 0.94843 0.95582 0.94402 0.92052 0.91164 0.95362 0.91661 0.77444 0.86148 0.87122 0.87621 0.91687 0.91694 0.91914 0.92024 0.92067 0.91774 0.91190 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.48 37.16 0.35 -2.25 16 2 C -0.13 -3.07 5.46 -26.73 -0.15 -3.21 16 3 C 0.26 6.21 1.59 -69.08 -0.11 6.10 16 4 H 0.03 0.76 5.88 -51.93 -0.31 0.45 16 5 C -0.60 -15.72 7.51 -34.44 -0.26 -15.97 16 6 H 0.05 1.40 7.71 -52.49 -0.40 0.99 16 7 C 0.03 0.77 5.24 -17.81 -0.09 0.67 16 8 N -0.90 -25.69 12.84 55.43 0.71 -24.98 16 9 Si 1.07 24.11 29.91 -169.99 -5.08 19.02 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.72 -14.95 4.26 -53.19 -0.23 -15.17 16 14 C 0.24 4.66 6.58 -83.65 -0.55 4.11 16 15 C -0.21 -4.09 8.76 -39.48 -0.35 -4.43 16 16 C -0.07 -1.20 10.04 -39.72 -0.40 -1.60 16 17 C -0.21 -3.23 9.60 -39.41 -0.38 -3.61 16 18 C -0.03 -0.52 5.74 -104.63 -0.60 -1.12 16 19 C -0.17 -2.92 5.75 -104.42 -0.60 -3.52 16 20 C -0.07 -1.02 4.85 -28.06 -0.14 -1.16 16 21 C -0.11 -1.37 5.98 -26.70 -0.16 -1.53 16 22 C -0.12 -1.31 5.98 -26.70 -0.16 -1.47 16 23 C -0.08 -0.93 5.67 -28.05 -0.16 -1.09 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.75 7.45 -51.93 -0.39 0.36 16 26 H 0.06 1.36 7.40 -51.93 -0.38 0.98 16 27 H 0.07 1.75 6.19 -51.92 -0.32 1.43 16 28 H 0.03 0.61 7.66 -51.93 -0.40 0.21 16 29 H 0.27 7.69 6.06 -40.82 -0.25 7.45 16 30 H 0.39 7.81 6.56 -40.82 -0.27 7.54 16 31 H 0.12 2.48 6.13 -52.48 -0.32 2.16 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.11 1.40 8.05 -52.49 -0.42 0.98 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.98 7.03 -51.93 -0.37 0.62 16 36 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -27.59 315.79 -10.01 -37.60 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.42 Total: 8.86 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: -3.74 Total: -30.08 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.48 Total: -40.16 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.08 Total: 19.02 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.59 -10.01 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036678824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.279 kcal (2) G-P(sol) polarization free energy of solvation -27.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds