Wall clock time and date at job start Mon Mar 30 2020 07:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47461 * 2 1 4 4 H 1.08997 * 109.47056 * 180.08577 * 3 2 1 5 5 C 1.50697 * 109.46865 * 300.09195 * 3 2 1 6 6 H 1.07999 * 119.99899 * 115.96906 * 5 3 2 7 7 C 1.37886 * 120.00039 * 295.96129 * 5 3 2 8 8 N 1.31519 * 119.99578 * 353.53928 * 7 5 3 9 9 Si 1.86797 * 119.99795 * 173.81221 * 7 5 3 10 10 H 1.48491 * 109.47116 * 269.72481 * 9 7 5 11 11 H 1.48502 * 109.47223 * 29.72796 * 9 7 5 12 12 H 1.48506 * 109.46961 * 149.72776 * 9 7 5 13 13 N 1.46497 * 109.46591 * 60.08757 * 3 2 1 14 14 C 1.39676 * 119.99740 * 82.59766 * 13 3 2 15 15 C 1.38654 * 119.81233 * 3.26778 * 14 13 3 16 16 C 1.38087 * 119.69210 * 179.78121 * 15 14 13 17 17 C 1.38023 * 119.85449 * 0.64569 * 16 15 14 18 18 C 1.38926 * 120.69999 * 359.74119 * 17 16 15 19 19 C 1.37578 * 119.73373 * 359.71818 * 18 17 16 20 20 C 1.50617 * 122.59373 * 180.80035 * 19 18 17 21 21 C 1.52727 * 110.60232 * 342.01667 * 20 19 18 22 22 C 1.53333 * 108.39933 * 51.07373 * 21 20 19 23 23 C 1.50644 * 117.72822 * 179.40397 * 18 17 16 24 24 H 1.09000 * 109.46964 * 185.14938 * 1 2 3 25 25 H 1.09000 * 109.46875 * 305.14379 * 1 2 3 26 26 H 1.09002 * 109.47282 * 65.14453 * 1 2 3 27 27 H 1.09009 * 109.46833 * 240.00273 * 2 1 3 28 28 H 1.09002 * 109.47247 * 120.00363 * 2 1 3 29 29 H 0.96990 * 120.00106 * 355.42111 * 8 7 5 30 30 H 0.97001 * 119.99957 * 262.59001 * 13 3 2 31 31 H 1.08004 * 120.15208 * 0.03320 * 15 14 13 32 32 H 1.08002 * 120.07411 * 180.40342 * 16 15 14 33 33 H 1.07996 * 119.65120 * 179.76338 * 17 16 15 34 34 H 1.08993 * 109.25066 * 102.30623 * 20 19 18 35 35 H 1.09002 * 109.24970 * 221.73225 * 20 19 18 36 36 H 1.09003 * 109.68412 * 291.35121 * 21 20 19 37 37 H 1.09000 * 109.68063 * 170.79468 * 21 20 19 38 38 H 1.09002 * 109.68085 * 170.49651 * 22 21 20 39 39 H 1.08992 * 109.67924 * 49.94487 * 22 21 20 40 40 H 1.08997 * 109.25229 * 282.49645 * 23 18 17 41 41 H 1.09001 * 109.24932 * 41.92919 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4424 -0.0015 5 6 1.5359 2.1535 -1.2293 6 1 0.8626 2.9921 -1.1301 7 6 1.9344 1.7336 -2.4808 8 7 2.8506 0.7975 -2.5994 9 14 1.1783 2.4996 -4.0075 10 1 -0.0222 1.7230 -4.4082 11 1 0.7861 3.9018 -3.7155 12 1 2.1702 2.4829 -5.1126 13 7 1.5535 2.1324 1.1972 14 6 2.2284 1.9847 2.4112 15 6 3.3964 1.2395 2.4642 16 6 4.0641 1.0989 3.6647 17 6 3.5584 1.6889 4.8054 18 6 2.3841 2.4299 4.7598 19 6 1.7200 2.5831 3.5647 20 6 0.4525 3.3868 3.4380 21 6 -0.1903 3.5960 4.8076 22 6 0.8758 4.1435 5.7640 23 6 1.8853 3.0329 6.0470 24 1 -0.3633 -1.0235 0.0922 25 1 -0.3633 0.5916 0.8403 26 1 -0.3634 0.4320 -0.9325 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 3.2936 0.4497 -1.8098 30 1 0.7626 2.6918 1.1469 31 1 3.7844 0.7746 1.5699 32 1 4.9780 0.5252 3.7118 33 1 4.0812 1.5736 5.7433 34 1 0.6844 4.3566 2.9980 35 1 -0.2460 2.8567 2.7905 36 1 -0.5684 2.6457 5.1847 37 1 -1.0094 4.3102 4.7234 38 1 0.4060 4.4587 6.6957 39 1 1.3823 4.9912 5.3026 40 1 1.4079 2.2573 6.6459 41 1 2.7284 3.4460 6.6007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036678824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:41 Heat of formation + Delta-G solvation = -18.929282 kcal Electronic energy + Delta-G solvation = -19765.302513 eV Core-core repulsion = 17028.690101 eV Total energy + Delta-G solvation = -2736.612412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.09001 -38.45270 -36.65897 -35.03969 -33.14691 -31.48884 -31.02958 -29.07153 -27.48397 -25.80206 -24.53572 -23.48753 -22.61609 -21.18814 -20.16037 -19.18885 -17.96564 -16.70133 -16.44388 -15.74204 -15.71544 -15.50077 -15.36427 -14.77261 -14.65140 -14.48446 -14.42364 -13.96624 -13.68304 -13.37642 -13.20072 -12.74455 -12.67402 -12.54312 -12.42884 -12.12043 -12.01302 -11.96910 -11.78288 -11.72869 -11.29816 -11.06955 -10.87901 -10.54126 -10.43181 -9.37919 -8.63685 -8.06234 -6.36387 0.58173 0.83486 1.53221 1.60388 1.77395 2.52378 2.85784 3.00219 3.17100 3.80261 3.87346 4.06963 4.21464 4.29882 4.31257 4.33534 4.39976 4.54879 4.56454 4.62162 4.69964 4.75264 4.88069 4.95890 4.97896 5.02757 5.11358 5.13008 5.17657 5.20046 5.24834 5.39840 5.44425 5.47813 5.48728 5.61532 5.76295 5.83349 5.88304 6.03973 6.22724 6.49615 6.74874 7.10677 7.43363 8.73332 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.005627 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.992229 B = 4974.914392 C = 5441.382746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.125 4.125 3 C 0.272 3.728 4 H -0.006 1.006 5 C -0.606 4.606 6 H 0.051 0.949 7 C -0.018 4.018 8 N -0.929 5.929 9 Si 1.113 2.887 10 H -0.273 1.273 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.722 5.722 14 C 0.209 3.791 15 C -0.238 4.238 16 C -0.077 4.077 17 C -0.199 4.199 18 C -0.036 4.036 19 C -0.175 4.175 20 C -0.070 4.070 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.076 4.076 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.030 0.970 29 H 0.259 0.741 30 H 0.393 0.607 31 H 0.093 0.907 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 4.323 16.232 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.165 4.165 3 C 0.167 3.833 4 H 0.012 0.988 5 C -0.645 4.645 6 H 0.069 0.931 7 C -0.217 4.217 8 N -0.566 5.566 9 Si 0.936 3.064 10 H -0.198 1.198 11 H -0.199 1.199 12 H -0.213 1.213 13 N -0.347 5.347 14 C 0.103 3.897 15 C -0.261 4.261 16 C -0.096 4.096 17 C -0.219 4.219 18 C -0.037 4.037 19 C -0.180 4.180 20 C -0.107 4.107 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.113 4.113 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.228 0.772 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.348 4.142 14.392 15.595 hybrid contribution 0.308 -0.167 0.930 0.994 sum -4.039 3.975 15.322 16.337 Atomic orbital electron populations 1.21372 0.95068 0.99729 1.01026 1.21816 0.97534 0.98708 0.98411 1.18418 0.92319 0.89427 0.83157 0.98802 1.22219 1.31725 1.17906 0.92614 0.93104 1.27008 0.95315 0.95278 1.04134 1.70868 1.24461 1.27958 1.33325 0.82965 0.75636 0.75647 0.72165 1.19829 1.19851 1.21293 1.45056 1.30972 1.52552 1.06139 1.18312 0.91383 0.93434 0.86606 1.20655 0.98395 1.08081 0.98992 1.20965 0.98855 0.97884 0.91886 1.21061 0.98582 1.03666 0.98625 1.19709 0.93841 0.95749 0.94387 1.19271 1.00615 1.06396 0.91691 1.20227 0.93258 0.98099 0.99147 1.21495 0.98086 1.01625 0.93609 1.21540 0.96258 0.97414 1.00053 1.20530 0.99649 0.98210 0.92892 0.93472 0.93424 0.93560 0.93773 0.95115 0.93005 0.77156 0.88864 0.85117 0.84346 0.92061 0.92614 0.91767 0.90201 0.89209 0.92396 0.89573 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.83 9.48 71.98 0.68 -4.15 16 2 C -0.13 -5.96 5.46 30.59 0.17 -5.79 16 3 C 0.27 13.60 1.59 44.25 0.07 13.67 16 4 H -0.01 -0.32 5.88 -2.39 -0.01 -0.33 16 5 C -0.61 -32.58 7.51 25.60 0.19 -32.39 16 6 H 0.05 2.70 7.71 -2.91 -0.02 2.68 16 7 C -0.02 -0.97 5.24 84.66 0.44 -0.53 16 8 N -0.93 -54.85 12.84 21.45 0.28 -54.57 16 9 Si 1.11 48.91 29.91 68.60 2.05 50.97 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.72 -31.26 4.26 -322.20 -1.37 -32.63 16 14 C 0.21 8.41 6.58 38.30 0.25 8.66 16 15 C -0.24 -9.64 8.76 22.33 0.20 -9.44 16 16 C -0.08 -2.56 10.04 22.18 0.22 -2.34 16 17 C -0.20 -5.72 9.60 22.38 0.21 -5.50 16 18 C -0.04 -1.04 5.74 -19.87 -0.11 -1.15 16 19 C -0.17 -5.85 5.75 -19.73 -0.11 -5.96 16 20 C -0.07 -1.98 4.85 29.73 0.14 -1.84 16 21 C -0.11 -2.31 5.98 30.61 0.18 -2.13 16 22 C -0.12 -2.10 5.98 30.62 0.18 -1.92 16 23 C -0.08 -1.52 5.67 29.74 0.17 -1.35 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.05 1.88 7.45 -2.39 -0.02 1.87 16 26 H 0.05 2.07 7.40 -2.39 -0.02 2.05 16 27 H 0.04 2.31 6.19 -2.38 -0.01 2.29 16 28 H 0.03 1.40 7.66 -2.39 -0.02 1.38 16 29 H 0.26 15.60 6.06 -92.72 -0.56 15.04 16 30 H 0.39 16.17 6.56 -92.71 -0.61 15.56 16 31 H 0.09 4.19 6.13 -2.91 -0.02 4.18 16 32 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.14 3.07 8.05 -2.91 -0.02 3.05 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.66 7.03 -2.39 -0.02 1.64 16 36 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 1.48 8.12 -2.39 -0.02 1.46 16 Total: -1.00 -61.52 315.79 4.46 -57.06 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.61 Total: 31.33 kcal Atomic # 6 Polarization: -55.05 SS G_CDS: 2.89 Total: -52.16 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -1.10 Total: -87.20 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.05 Total: 50.97 kcal Total: -61.52 4.46 -57.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036678824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.133 kcal (2) G-P(sol) polarization free energy of solvation -61.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds