Wall clock time and date at job start Mon Mar 30 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38260 * 119.99893 * 2 1 4 4 C 1.38215 * 120.00004 * 179.83100 * 3 2 1 5 5 C 1.38257 * 119.99972 * 0.40301 * 4 3 2 6 6 C 1.50701 * 119.99803 * 179.80792 * 5 4 3 7 7 C 1.38210 * 119.99778 * 359.52979 * 5 4 3 8 8 C 1.50699 * 119.99891 * 180.25552 * 7 5 4 9 9 N 1.46906 * 109.47077 * 79.99820 * 8 7 5 10 10 C 1.46901 * 111.00113 * 189.99875 * 9 8 7 11 11 C 1.50699 * 109.47296 * 161.73673 * 10 9 8 12 12 H 1.08003 * 119.99558 * 354.37167 * 11 10 9 13 13 C 1.37877 * 120.00397 * 174.37278 * 11 10 9 14 14 N 1.31514 * 119.99851 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99990 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46883 * 90.00276 * 15 13 11 17 17 H 1.48503 * 109.46984 * 210.00016 * 15 13 11 18 18 H 1.48489 * 109.47234 * 330.00303 * 15 13 11 19 19 C 1.46896 * 110.99654 * 66.05042 * 9 8 7 20 20 C 1.53007 * 117.49724 * 261.65165 * 19 9 8 21 21 C 1.53000 * 117.50127 * 193.03023 * 19 9 8 22 22 C 1.38218 * 120.00348 * 179.97438 * 2 1 3 23 23 H 1.09009 * 109.47061 * 270.02221 * 1 2 3 24 24 H 1.08993 * 109.47774 * 30.02355 * 1 2 3 25 25 H 1.08995 * 109.46980 * 150.02634 * 1 2 3 26 26 H 1.08001 * 119.99713 * 0.02562 * 3 2 1 27 27 H 1.08003 * 119.99752 * 180.20649 * 4 3 2 28 28 H 1.09002 * 109.46909 * 269.72166 * 6 5 4 29 29 H 1.09008 * 109.46869 * 149.72544 * 6 5 4 30 30 H 1.08992 * 109.47197 * 29.72641 * 6 5 4 31 31 H 1.09004 * 109.47601 * 200.00037 * 8 7 5 32 32 H 1.08997 * 109.47546 * 320.00372 * 8 7 5 33 33 H 1.09002 * 109.47258 * 281.73670 * 10 9 8 34 34 H 1.09001 * 109.47120 * 41.73303 * 10 9 8 35 35 H 0.96995 * 120.00449 * 179.97438 * 14 13 11 36 36 H 1.09008 * 115.55459 * 47.35953 * 19 9 8 37 37 H 1.08996 * 117.49594 * 0.02562 * 20 19 9 38 38 H 1.09007 * 117.49526 * 145.02307 * 20 19 9 39 39 H 1.08999 * 117.50446 * 214.97788 * 21 19 9 40 40 H 1.09008 * 117.49762 * 359.97438 * 21 19 9 41 41 H 1.07998 * 119.99503 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0035 5 6 4.2717 0.0001 -0.0014 6 6 5.7787 0.0002 -0.0019 7 6 3.5806 -1.1968 0.0000 8 6 4.3342 -2.5019 0.0005 9 7 4.7883 -2.8046 1.3645 10 6 5.7227 -3.9381 1.3688 11 6 6.5009 -3.9427 2.6593 12 1 6.3859 -3.1306 3.3620 13 6 7.3597 -4.9834 2.9429 14 7 7.5001 -5.9719 2.0869 15 14 8.3248 -4.9886 4.5423 16 1 7.5366 -5.6803 5.5937 17 1 9.6128 -5.6997 4.3408 18 1 8.5921 -3.5900 4.9636 19 6 3.6478 -3.0593 2.2546 20 6 3.1714 -1.9060 3.1400 21 6 3.9192 -3.0880 3.7600 22 6 2.1981 -1.1970 0.0005 23 1 -0.3634 0.0004 1.0278 24 1 -0.3634 0.8897 -0.5141 25 1 -0.3633 -0.8902 -0.5134 26 1 1.6582 2.1327 0.0004 27 1 4.1203 2.1328 0.0069 28 1 6.1416 -0.0008 -1.0297 29 1 6.1422 -0.8894 0.5127 30 1 6.1421 0.8906 0.5110 31 1 3.6793 -3.2998 -0.3499 32 1 5.1972 -2.4235 -0.6606 33 1 5.1643 -4.8698 1.2780 34 1 6.4117 -3.8442 0.5294 35 1 8.1045 -6.7039 2.2862 36 1 2.8916 -3.7418 1.8664 37 1 3.7040 -0.9582 3.0616 38 1 2.1015 -1.8295 3.3343 39 1 3.3414 -3.7890 4.3624 40 1 4.9442 -2.9184 4.0900 41 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:33 Heat of formation + Delta-G solvation = 47.076533 kcal Electronic energy + Delta-G solvation = -19677.650731 eV Core-core repulsion = 16943.900546 eV Total energy + Delta-G solvation = -2733.750185 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.52141 -37.36984 -34.19169 -33.23571 -32.47832 -30.73463 -28.99653 -27.19594 -24.88927 -24.26162 -22.20332 -21.70379 -21.43384 -20.14540 -19.05801 -16.57581 -15.58720 -15.49506 -14.96414 -14.72501 -14.38979 -14.11777 -13.89427 -13.40202 -12.94030 -12.82474 -12.53487 -12.52645 -12.15811 -11.98231 -11.55082 -11.47762 -11.28739 -11.20085 -10.90467 -10.79080 -10.66028 -10.58766 -10.39689 -9.89731 -9.51033 -9.11177 -9.07819 -8.46830 -8.37002 -8.04373 -7.26379 -5.99660 -3.99334 1.66108 1.70795 3.32717 3.39325 3.42869 3.99303 4.44813 4.69103 4.89757 5.03307 5.07085 5.21431 5.31767 5.35843 5.42205 5.63599 5.65709 5.73954 5.79477 5.84155 5.85303 5.93803 6.03034 6.08756 6.14961 6.21405 6.28727 6.33419 6.42821 6.47511 6.71291 6.75949 6.80031 6.85442 7.07008 7.11573 7.23685 7.35281 7.41070 7.88120 8.12639 8.22702 8.56044 9.07097 9.63346 11.11025 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028726 B = 0.005485 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.492376 B = 5103.653224 C = 5371.312764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C -0.127 4.127 4 C -0.124 4.124 5 C -0.065 4.065 6 C -0.122 4.122 7 C -0.055 4.055 8 C 0.092 3.908 9 N -0.501 5.501 10 C 0.194 3.806 11 C -0.496 4.496 12 H 0.069 0.931 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.893 3.107 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.273 1.273 19 C 0.031 3.969 20 C -0.176 4.176 21 C -0.159 4.159 22 C -0.105 4.105 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.078 0.922 33 H -0.003 1.003 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.570 11.325 -4.023 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.065 4.065 6 C -0.179 4.179 7 C -0.055 4.055 8 C -0.035 4.035 9 N -0.226 5.226 10 C 0.070 3.930 11 C -0.535 4.535 12 H 0.086 0.914 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.721 3.279 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.078 4.078 20 C -0.214 4.214 21 C -0.196 4.196 22 C -0.124 4.124 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.015 0.985 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.136 0.864 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.193 11.539 -3.879 15.877 hybrid contribution 0.061 -0.886 0.527 1.033 sum -10.131 10.653 -3.353 15.079 Atomic orbital electron populations 1.20721 0.91876 1.02099 1.01892 1.19740 0.95479 0.93233 1.01560 1.20846 0.94150 0.96978 1.02534 1.20949 0.94012 0.97338 1.01910 1.19741 0.96253 0.92172 0.98357 1.20900 0.91145 1.04227 1.01600 1.19749 0.93015 0.94911 0.97853 1.21010 0.97762 0.92146 0.92611 1.61946 1.12865 1.42898 1.04863 1.19743 0.89640 0.85737 0.97888 1.21228 1.22664 1.06053 1.03543 0.91352 1.24966 0.97170 0.95588 0.96914 1.69953 1.37962 1.10506 1.35654 0.86577 0.79418 0.78136 0.83792 1.20787 1.21385 1.19798 1.21972 0.94700 0.99387 0.91778 1.22919 0.98404 0.94438 1.05639 1.23154 1.02528 0.99228 0.94648 1.20833 0.93638 0.97031 1.00905 0.91619 0.92097 0.91981 0.86955 0.86723 0.92139 0.88694 0.92406 0.95316 0.90334 0.98501 0.95713 0.93052 0.91730 0.89255 0.90675 0.90423 0.86446 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16 2 C -0.10 -1.32 5.88 -104.62 -0.62 -1.94 16 3 C -0.13 -1.64 9.70 -39.58 -0.38 -2.02 16 4 C -0.12 -1.71 9.70 -39.58 -0.38 -2.09 16 5 C -0.06 -1.00 5.88 -104.62 -0.62 -1.62 16 6 C -0.12 -1.84 9.26 36.01 0.33 -1.51 16 7 C -0.05 -0.89 4.46 -104.63 -0.47 -1.36 16 8 C 0.09 1.68 4.21 -4.97 -0.02 1.66 16 9 N -0.50 -10.50 3.91 -229.51 -0.90 -11.40 16 10 C 0.19 4.91 4.75 -4.98 -0.02 4.89 16 11 C -0.50 -13.41 7.81 -34.44 -0.27 -13.68 16 12 H 0.07 1.83 5.56 -52.48 -0.29 1.54 16 13 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 14 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 15 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 C 0.03 0.61 4.19 -67.71 -0.28 0.32 16 20 C -0.18 -3.09 9.81 -26.73 -0.26 -3.35 16 21 C -0.16 -3.10 9.41 -26.73 -0.25 -3.35 16 22 C -0.11 -1.56 8.83 -39.58 -0.35 -1.91 16 23 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 24 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 25 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 27 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.70 6.35 -51.92 -0.33 1.37 16 30 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.03 0.52 7.98 -51.93 -0.41 0.10 16 32 H 0.08 1.42 6.98 -51.93 -0.36 1.06 16 33 H 0.00 -0.08 8.02 -51.93 -0.42 -0.50 16 34 H 0.02 0.66 7.76 -51.93 -0.40 0.26 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 37 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.12 2.57 5.31 -51.92 -0.28 2.29 16 41 H 0.11 1.60 8.04 -52.49 -0.42 1.18 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -28.63 330.95 -10.22 -38.84 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.69 Total: 2.16 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -3.33 Total: -25.29 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.16 Total: -37.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.63 -10.22 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.921 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds