Wall clock time and date at job start Mon Mar 30 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38260 * 119.99893 * 2 1 4 4 C 1.38215 * 120.00004 * 179.83100 * 3 2 1 5 5 C 1.38257 * 119.99972 * 0.40301 * 4 3 2 6 6 C 1.50701 * 119.99803 * 179.80792 * 5 4 3 7 7 C 1.38210 * 119.99778 * 359.52979 * 5 4 3 8 8 C 1.50699 * 119.99891 * 180.25552 * 7 5 4 9 9 N 1.46906 * 109.47077 * 79.99820 * 8 7 5 10 10 C 1.46901 * 111.00113 * 189.99875 * 9 8 7 11 11 C 1.50699 * 109.47296 * 161.73673 * 10 9 8 12 12 H 1.08003 * 119.99558 * 354.37167 * 11 10 9 13 13 C 1.37877 * 120.00397 * 174.37278 * 11 10 9 14 14 N 1.31514 * 119.99851 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99990 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46883 * 90.00276 * 15 13 11 17 17 H 1.48503 * 109.46984 * 210.00016 * 15 13 11 18 18 H 1.48489 * 109.47234 * 330.00303 * 15 13 11 19 19 C 1.46896 * 110.99654 * 66.05042 * 9 8 7 20 20 C 1.53007 * 117.49724 * 261.65165 * 19 9 8 21 21 C 1.53000 * 117.50127 * 193.03023 * 19 9 8 22 22 C 1.38218 * 120.00348 * 179.97438 * 2 1 3 23 23 H 1.09009 * 109.47061 * 270.02221 * 1 2 3 24 24 H 1.08993 * 109.47774 * 30.02355 * 1 2 3 25 25 H 1.08995 * 109.46980 * 150.02634 * 1 2 3 26 26 H 1.08001 * 119.99713 * 0.02562 * 3 2 1 27 27 H 1.08003 * 119.99752 * 180.20649 * 4 3 2 28 28 H 1.09002 * 109.46909 * 269.72166 * 6 5 4 29 29 H 1.09008 * 109.46869 * 149.72544 * 6 5 4 30 30 H 1.08992 * 109.47197 * 29.72641 * 6 5 4 31 31 H 1.09004 * 109.47601 * 200.00037 * 8 7 5 32 32 H 1.08997 * 109.47546 * 320.00372 * 8 7 5 33 33 H 1.09002 * 109.47258 * 281.73670 * 10 9 8 34 34 H 1.09001 * 109.47120 * 41.73303 * 10 9 8 35 35 H 0.96995 * 120.00449 * 179.97438 * 14 13 11 36 36 H 1.09008 * 115.55459 * 47.35953 * 19 9 8 37 37 H 1.08996 * 117.49594 * 0.02562 * 20 19 9 38 38 H 1.09007 * 117.49526 * 145.02307 * 20 19 9 39 39 H 1.08999 * 117.50446 * 214.97788 * 21 19 9 40 40 H 1.09008 * 117.49762 * 359.97438 * 21 19 9 41 41 H 1.07998 * 119.99503 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0035 5 6 4.2717 0.0001 -0.0014 6 6 5.7787 0.0002 -0.0019 7 6 3.5806 -1.1968 0.0000 8 6 4.3342 -2.5019 0.0005 9 7 4.7883 -2.8046 1.3645 10 6 5.7227 -3.9381 1.3688 11 6 6.5009 -3.9427 2.6593 12 1 6.3859 -3.1306 3.3620 13 6 7.3597 -4.9834 2.9429 14 7 7.5001 -5.9719 2.0869 15 14 8.3248 -4.9886 4.5423 16 1 7.5366 -5.6803 5.5937 17 1 9.6128 -5.6997 4.3408 18 1 8.5921 -3.5900 4.9636 19 6 3.6478 -3.0593 2.2546 20 6 3.1714 -1.9060 3.1400 21 6 3.9192 -3.0880 3.7600 22 6 2.1981 -1.1970 0.0005 23 1 -0.3634 0.0004 1.0278 24 1 -0.3634 0.8897 -0.5141 25 1 -0.3633 -0.8902 -0.5134 26 1 1.6582 2.1327 0.0004 27 1 4.1203 2.1328 0.0069 28 1 6.1416 -0.0008 -1.0297 29 1 6.1422 -0.8894 0.5127 30 1 6.1421 0.8906 0.5110 31 1 3.6793 -3.2998 -0.3499 32 1 5.1972 -2.4235 -0.6606 33 1 5.1643 -4.8698 1.2780 34 1 6.4117 -3.8442 0.5294 35 1 8.1045 -6.7039 2.2862 36 1 2.8916 -3.7418 1.8664 37 1 3.7040 -0.9582 3.0616 38 1 2.1015 -1.8295 3.3343 39 1 3.3414 -3.7890 4.3624 40 1 4.9442 -2.9184 4.0900 41 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:32 Heat of formation + Delta-G solvation = 33.083396 kcal Electronic energy + Delta-G solvation = -19678.257519 eV Core-core repulsion = 16943.900546 eV Total energy + Delta-G solvation = -2734.356973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.71690 -38.89704 -35.57524 -34.94358 -34.04564 -32.14917 -30.00737 -29.03847 -26.34406 -25.39933 -24.14585 -23.03959 -22.76936 -21.56819 -20.46100 -18.57011 -16.86150 -16.74526 -16.55224 -16.44374 -15.70309 -15.63829 -15.30084 -14.55709 -14.45261 -13.97153 -13.90598 -13.82048 -13.52321 -13.42936 -13.09044 -12.99158 -12.71157 -12.64145 -12.56214 -12.36272 -12.24445 -11.87885 -11.73232 -11.51588 -11.19264 -11.04592 -10.70594 -10.51140 -9.58894 -9.15899 -8.98687 -8.14227 -6.21372 0.55758 0.60812 1.42186 1.42653 1.53773 2.42574 2.85219 3.12359 3.18632 3.37977 3.92447 3.99030 4.13154 4.19162 4.25179 4.29778 4.36297 4.47453 4.57850 4.66767 4.74348 4.82062 4.85178 4.89138 4.90240 4.91323 4.95944 5.04183 5.12980 5.19441 5.27846 5.33470 5.37376 5.48165 5.54723 5.66570 5.79216 5.81010 5.95349 6.11866 6.27476 6.43286 6.64747 6.93508 7.46187 8.96567 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.028726 B = 0.005485 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.492376 B = 5103.653224 C = 5371.312764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.123 4.123 4 C -0.125 4.125 5 C -0.083 4.083 6 C -0.117 4.117 7 C -0.071 4.071 8 C 0.097 3.903 9 N -0.500 5.500 10 C 0.210 3.790 11 C -0.501 4.501 12 H 0.070 0.930 13 C 0.002 3.998 14 N -0.939 5.939 15 Si 0.960 3.040 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.265 1.265 19 C 0.012 3.988 20 C -0.138 4.138 21 C -0.170 4.170 22 C -0.115 4.115 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.143 0.857 27 H 0.136 0.864 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.024 0.976 32 H 0.068 0.932 33 H -0.037 1.037 34 H 0.000 1.000 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.280 13.684 -3.126 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.141 4.141 4 C -0.143 4.143 5 C -0.083 4.083 6 C -0.173 4.173 7 C -0.072 4.072 8 C -0.031 4.031 9 N -0.224 5.224 10 C 0.085 3.915 11 C -0.539 4.539 12 H 0.088 0.912 13 C -0.196 4.196 14 N -0.580 5.580 15 Si 0.786 3.214 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.097 4.097 20 C -0.175 4.175 21 C -0.207 4.207 22 C -0.134 4.134 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.161 0.839 27 H 0.154 0.846 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.086 0.914 33 H -0.019 1.019 34 H 0.018 0.982 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.920 13.919 -2.982 18.567 hybrid contribution 0.523 -1.564 0.180 1.659 sum -11.397 12.356 -2.802 17.041 Atomic orbital electron populations 1.20774 0.89539 1.03317 1.02804 1.20094 0.97200 0.92576 1.00052 1.21236 0.93925 0.98125 1.00859 1.21209 0.94724 0.97313 1.01008 1.19849 0.96257 0.92774 0.99448 1.20808 0.91509 1.03108 1.01922 1.19553 0.93655 0.93768 1.00217 1.20957 0.97565 0.93671 0.90879 1.61877 1.13406 1.40281 1.06802 1.19385 0.89765 0.85896 0.96487 1.21500 1.22537 1.05961 1.03917 0.91179 1.25817 0.98235 0.95216 1.00296 1.70089 1.38922 1.11290 1.37708 0.85514 0.77844 0.78458 0.79634 1.20018 1.21167 1.18895 1.22060 0.94491 1.01448 0.91670 1.22842 0.99582 0.92869 1.02225 1.23108 1.01853 1.01192 0.94583 1.20914 0.93000 0.98060 1.01389 0.90715 0.90196 0.91570 0.83932 0.84574 0.91212 0.92170 0.90992 0.95814 0.91369 1.01910 0.98201 0.93011 0.91728 0.89960 0.87764 0.88926 0.88946 0.86931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.01 71.23 0.71 -1.08 16 2 C -0.10 -2.31 5.88 -19.87 -0.12 -2.43 16 3 C -0.12 -2.72 9.70 22.27 0.22 -2.51 16 4 C -0.12 -3.08 9.70 22.27 0.22 -2.87 16 5 C -0.08 -2.49 5.88 -19.87 -0.12 -2.61 16 6 C -0.12 -3.53 9.26 71.24 0.66 -2.87 16 7 C -0.07 -2.31 4.46 -19.87 -0.09 -2.40 16 8 C 0.10 3.68 4.21 85.56 0.36 4.04 16 9 N -0.50 -21.74 3.91 -880.03 -3.44 -25.18 16 10 C 0.21 11.24 4.75 85.56 0.41 11.65 16 11 C -0.50 -27.91 7.81 25.60 0.20 -27.71 16 12 H 0.07 3.83 5.56 -2.91 -0.02 3.82 16 13 C 0.00 0.09 5.46 84.65 0.46 0.55 16 14 N -0.94 -56.79 13.29 21.45 0.28 -56.50 16 15 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 19 C 0.01 0.49 4.19 44.92 0.19 0.68 16 20 C -0.14 -4.59 9.81 30.60 0.30 -4.29 16 21 C -0.17 -6.58 9.41 30.59 0.29 -6.29 16 22 C -0.11 -3.25 8.83 22.27 0.20 -3.05 16 23 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 25 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 26 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 27 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 2.24 6.35 -2.38 -0.02 2.22 16 30 H 0.07 1.90 8.08 -2.39 -0.02 1.88 16 31 H 0.02 0.90 7.98 -2.38 -0.02 0.88 16 32 H 0.07 2.66 6.98 -2.39 -0.02 2.64 16 33 H -0.04 -2.18 8.02 -2.39 -0.02 -2.20 16 34 H 0.00 0.00 7.76 -2.39 -0.02 -0.02 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 39 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.09 4.07 5.31 -2.38 -0.01 4.06 16 41 H 0.11 3.10 8.04 -2.91 -0.02 3.07 16 Total: -1.00 -63.08 330.95 3.74 -59.34 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.99 Total: 17.06 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 3.88 Total: -41.19 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -3.16 Total: -81.69 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -63.08 3.74 -59.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.426 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds