Wall clock time and date at job start Mon Mar 30 2020 07:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.46579 * 2 1 4 4 C 1.53032 * 109.46489 * 119.97445 * 2 1 3 5 5 C 1.53205 * 109.30264 * 179.19561 * 4 2 1 6 6 C 1.53124 * 109.11391 * 302.37003 * 5 4 2 7 7 C 1.53036 * 109.31185 * 57.63042 * 6 5 4 8 8 N 1.46843 * 109.52807 * 300.80332 * 7 6 5 9 9 C 1.46899 * 111.00108 * 185.83642 * 8 7 6 10 10 H 1.08997 * 109.47093 * 279.56170 * 9 8 7 11 11 C 1.50699 * 109.47034 * 39.56039 * 9 8 7 12 12 H 1.08004 * 120.00021 * 55.14639 * 11 9 8 13 13 C 1.37877 * 120.00072 * 235.14582 * 11 9 8 14 14 N 1.31518 * 119.99674 * 5.34618 * 13 11 9 15 15 Si 1.86797 * 120.00180 * 185.34302 * 13 11 9 16 16 H 1.48507 * 109.46855 * 59.99730 * 15 13 11 17 17 H 1.48498 * 109.47145 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47424 * 300.00270 * 15 13 11 19 19 C 1.50705 * 109.46877 * 159.55819 * 9 8 7 20 20 C 1.38239 * 120.00174 * 317.05337 * 19 9 8 21 21 C 1.38227 * 119.99689 * 179.76870 * 20 19 9 22 22 C 1.38226 * 120.00265 * 0.48360 * 21 20 19 23 23 C 1.38231 * 120.00377 * 359.79228 * 22 21 20 24 24 C 1.38233 * 119.99864 * 137.32739 * 19 9 8 25 25 H 1.09002 * 109.47478 * 171.35463 * 1 2 3 26 26 H 1.09004 * 109.47084 * 291.35283 * 1 2 3 27 27 H 1.08997 * 109.47243 * 51.35642 * 1 2 3 28 28 H 1.09002 * 109.50097 * 299.13626 * 4 2 1 29 29 H 1.09002 * 109.50692 * 59.21183 * 4 2 1 30 30 H 1.08996 * 109.57892 * 182.45801 * 5 4 2 31 31 H 1.09003 * 109.51441 * 62.23775 * 5 4 2 32 32 H 1.09007 * 109.50252 * 297.67534 * 6 5 4 33 33 H 1.09002 * 109.50329 * 177.59897 * 6 5 4 34 34 H 1.09005 * 109.45870 * 60.82174 * 7 6 5 35 35 H 1.08999 * 109.45988 * 180.78536 * 7 6 5 36 36 H 0.96996 * 119.99528 * 180.02562 * 14 13 11 37 37 H 1.08001 * 119.99423 * 359.97438 * 20 19 9 38 38 H 1.08003 * 119.99299 * 180.25306 * 21 20 19 39 39 H 1.08007 * 120.00462 * 179.77245 * 22 21 20 40 40 H 1.07998 * 120.00839 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.99703 * 0.02562 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5718 -0.7363 1.2360 6 6 4.0547 -1.4188 -0.0468 7 6 3.4863 -0.6777 -1.2592 8 7 2.0192 -0.6918 -1.1995 9 6 1.4372 -0.1106 -2.4166 10 1 1.4588 0.9769 -2.3462 11 6 2.2359 -0.5523 -3.6157 12 1 2.3929 -1.6045 -3.8022 13 6 2.7663 0.3868 -4.4747 14 7 2.6657 1.6673 -4.1923 15 14 3.6276 -0.1598 -6.0396 16 1 2.6772 -0.9246 -6.8864 17 1 4.1044 1.0330 -6.7846 18 1 4.7853 -1.0224 -5.6920 19 6 0.0114 -0.5763 -2.5634 20 6 -0.3125 -1.8981 -2.3206 21 6 -1.6210 -2.3241 -2.4507 22 6 -2.6040 -1.4307 -2.8332 23 6 -2.2792 -0.1103 -3.0816 24 6 -0.9715 0.3170 -2.9465 25 1 -0.3634 -1.0160 -0.1545 26 1 -0.3633 0.3742 0.9572 27 1 -0.3633 0.6417 -0.8026 28 1 1.6895 -0.1981 2.1399 29 1 1.6653 -1.7445 1.2580 30 1 3.9394 -1.2867 2.1020 31 1 3.9465 0.2868 1.2675 32 1 3.7124 -2.4536 -0.0596 33 1 5.1439 -1.3953 -0.0836 34 1 3.8402 0.3532 -1.2533 35 1 3.8173 -1.1700 -2.1736 36 1 3.0385 2.3279 -4.7968 37 1 0.4564 -2.5971 -2.0260 38 1 -1.8747 -3.3559 -2.2570 39 1 -3.6258 -1.7644 -2.9385 40 1 -3.0471 0.5877 -3.3809 41 1 -0.7175 1.3486 -3.1409 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055019904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:17 Heat of formation + Delta-G solvation = 19.459799 kcal Electronic energy + Delta-G solvation = -20503.495972 eV Core-core repulsion = 17768.548236 eV Total energy + Delta-G solvation = -2734.947736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.21629 -37.58040 -34.04034 -32.35128 -31.27951 -30.09337 -29.89562 -26.93905 -25.75102 -23.88136 -21.88515 -21.59003 -20.92486 -19.75076 -18.74998 -16.48923 -15.94006 -15.15755 -14.64668 -14.27710 -14.14752 -13.84517 -13.57068 -13.43084 -12.97821 -12.54361 -12.35345 -12.26194 -11.84765 -11.70704 -11.44850 -11.10619 -11.00636 -10.99015 -10.84187 -10.41005 -10.29151 -10.21634 -10.18135 -9.86298 -9.61892 -9.39869 -9.21494 -8.64915 -8.00012 -7.53705 -7.04657 -6.16084 -4.18956 2.28068 2.34345 3.25551 3.30273 3.33838 4.31074 4.66574 5.02856 5.22416 5.40341 5.43781 5.50938 5.66635 5.76626 5.84062 5.87122 6.03325 6.10862 6.20189 6.25060 6.26530 6.33178 6.42683 6.47054 6.49166 6.55078 6.58107 6.71975 6.81602 6.88884 6.90407 6.98415 7.08509 7.20935 7.32333 7.35006 7.50859 7.73806 7.78262 7.83620 8.04743 8.34701 8.65071 8.94448 9.43268 10.89482 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.011571 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.193900 B = 2419.214341 C = 3995.218110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.082 3.918 3 H 0.027 0.973 4 C -0.107 4.107 5 C -0.118 4.118 6 C -0.119 4.119 7 C 0.076 3.924 8 N -0.531 5.531 9 C 0.222 3.778 10 H 0.054 0.946 11 C -0.500 4.500 12 H 0.062 0.938 13 C 0.069 3.931 14 N -0.887 5.887 15 Si 0.894 3.106 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.005 4.005 20 C -0.105 4.105 21 C -0.133 4.133 22 C -0.156 4.156 23 C -0.127 4.127 24 C -0.131 4.131 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.090 0.910 36 H 0.265 0.735 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 -3.619 6.954 8.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 H 0.044 0.956 4 C -0.145 4.145 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.052 4.052 8 N -0.256 5.256 9 C 0.117 3.883 10 H 0.072 0.928 11 C -0.538 4.538 12 H 0.080 0.920 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.722 3.278 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.007 4.007 20 C -0.123 4.123 21 C -0.151 4.151 22 C -0.174 4.174 23 C -0.146 4.146 24 C -0.150 4.150 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.218 -3.902 6.912 8.564 hybrid contribution 0.645 0.703 -1.018 1.395 sum -2.573 -3.198 5.894 7.182 Atomic orbital electron populations 1.22273 0.95376 1.02748 1.00489 1.21512 0.94750 0.94991 0.91489 0.95559 1.21613 0.95173 1.00935 0.96775 1.21576 0.96181 1.00148 0.97674 1.21681 0.98775 1.00084 0.95135 1.21751 0.88009 0.98053 0.97338 1.62143 1.06651 1.54934 1.01906 1.18568 0.86902 0.95640 0.87231 0.92766 1.20878 1.31882 0.93277 1.07784 0.92017 1.24995 0.95508 0.94912 0.98080 1.69883 1.45363 1.00221 1.37000 0.86607 0.79929 0.78106 0.83178 1.19991 1.21268 1.19978 1.20442 0.96167 0.92763 0.91289 1.20937 0.95143 0.96305 0.99902 1.21009 0.93905 0.98473 1.01708 1.20776 0.98302 0.94059 1.04273 1.20908 0.96252 0.95669 1.01726 1.21009 0.92487 0.99880 1.01608 0.91581 0.94280 0.91608 0.93024 0.91761 0.93100 0.92875 0.91995 0.92897 0.96051 0.89177 0.92538 0.86210 0.87734 0.87881 0.87688 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 7.69 37.15 0.29 -2.45 16 2 C 0.08 1.54 2.35 -67.72 -0.16 1.38 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -1.70 5.36 -26.61 -0.14 -1.85 16 5 C -0.12 -1.80 6.01 -26.56 -0.16 -1.96 16 6 C -0.12 -1.98 6.09 -26.65 -0.16 -2.15 16 7 C 0.08 1.58 4.97 -3.84 -0.02 1.57 16 8 N -0.53 -11.13 3.79 -221.53 -0.84 -11.97 16 9 C 0.22 5.26 1.84 -70.02 -0.13 5.13 16 10 H 0.05 1.47 6.61 -51.93 -0.34 1.12 16 11 C -0.50 -12.89 6.03 -34.44 -0.21 -13.10 16 12 H 0.06 1.62 7.79 -52.48 -0.41 1.21 16 13 C 0.07 1.81 5.45 -17.82 -0.10 1.72 16 14 N -0.89 -24.40 12.62 55.43 0.70 -23.70 16 15 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 19 C -0.01 -0.12 2.41 -104.62 -0.25 -0.37 16 20 C -0.10 -2.09 7.44 -39.59 -0.29 -2.39 16 21 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 22 C -0.16 -2.66 10.05 -39.59 -0.40 -3.06 16 23 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 24 C -0.13 -2.73 8.11 -39.58 -0.32 -3.05 16 25 H 0.07 1.21 6.10 -51.93 -0.32 0.90 16 26 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.07 1.28 4.89 -51.93 -0.25 1.03 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 2.03 6.38 -51.93 -0.33 1.70 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.12 2.44 7.81 -52.49 -0.41 2.03 16 38 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 39 H 0.10 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.11 2.43 8.02 -52.48 -0.42 2.01 16 LS Contribution 314.52 15.07 4.74 4.74 Total: -1.00 -26.36 314.52 -9.97 -36.32 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.69 Total: 4.97 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -2.85 Total: -26.04 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.14 Total: -35.66 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.36 -9.97 -36.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.783 kcal (2) G-P(sol) polarization free energy of solvation -26.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds