Wall clock time and date at job start Mon Mar 30 2020 07:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.46579 * 2 1 4 4 C 1.53032 * 109.46489 * 119.97445 * 2 1 3 5 5 C 1.53205 * 109.30264 * 179.19561 * 4 2 1 6 6 C 1.53124 * 109.11391 * 302.37003 * 5 4 2 7 7 C 1.53036 * 109.31185 * 57.63042 * 6 5 4 8 8 N 1.46843 * 109.52807 * 300.80332 * 7 6 5 9 9 C 1.46899 * 111.00108 * 185.83642 * 8 7 6 10 10 H 1.08997 * 109.47093 * 279.56170 * 9 8 7 11 11 C 1.50699 * 109.47034 * 39.56039 * 9 8 7 12 12 H 1.08004 * 120.00021 * 55.14639 * 11 9 8 13 13 C 1.37877 * 120.00072 * 235.14582 * 11 9 8 14 14 N 1.31518 * 119.99674 * 5.34618 * 13 11 9 15 15 Si 1.86797 * 120.00180 * 185.34302 * 13 11 9 16 16 H 1.48507 * 109.46855 * 59.99730 * 15 13 11 17 17 H 1.48498 * 109.47145 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47424 * 300.00270 * 15 13 11 19 19 C 1.50705 * 109.46877 * 159.55819 * 9 8 7 20 20 C 1.38239 * 120.00174 * 317.05337 * 19 9 8 21 21 C 1.38227 * 119.99689 * 179.76870 * 20 19 9 22 22 C 1.38226 * 120.00265 * 0.48360 * 21 20 19 23 23 C 1.38231 * 120.00377 * 359.79228 * 22 21 20 24 24 C 1.38233 * 119.99864 * 137.32739 * 19 9 8 25 25 H 1.09002 * 109.47478 * 171.35463 * 1 2 3 26 26 H 1.09004 * 109.47084 * 291.35283 * 1 2 3 27 27 H 1.08997 * 109.47243 * 51.35642 * 1 2 3 28 28 H 1.09002 * 109.50097 * 299.13626 * 4 2 1 29 29 H 1.09002 * 109.50692 * 59.21183 * 4 2 1 30 30 H 1.08996 * 109.57892 * 182.45801 * 5 4 2 31 31 H 1.09003 * 109.51441 * 62.23775 * 5 4 2 32 32 H 1.09007 * 109.50252 * 297.67534 * 6 5 4 33 33 H 1.09002 * 109.50329 * 177.59897 * 6 5 4 34 34 H 1.09005 * 109.45870 * 60.82174 * 7 6 5 35 35 H 1.08999 * 109.45988 * 180.78536 * 7 6 5 36 36 H 0.96996 * 119.99528 * 180.02562 * 14 13 11 37 37 H 1.08001 * 119.99423 * 359.97438 * 20 19 9 38 38 H 1.08003 * 119.99299 * 180.25306 * 21 20 19 39 39 H 1.08007 * 120.00462 * 179.77245 * 22 21 20 40 40 H 1.07998 * 120.00839 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.99703 * 0.02562 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5718 -0.7363 1.2360 6 6 4.0547 -1.4188 -0.0468 7 6 3.4863 -0.6777 -1.2592 8 7 2.0192 -0.6918 -1.1995 9 6 1.4372 -0.1106 -2.4166 10 1 1.4588 0.9769 -2.3462 11 6 2.2359 -0.5523 -3.6157 12 1 2.3929 -1.6045 -3.8022 13 6 2.7663 0.3868 -4.4747 14 7 2.6657 1.6673 -4.1923 15 14 3.6276 -0.1598 -6.0396 16 1 2.6772 -0.9246 -6.8864 17 1 4.1044 1.0330 -6.7846 18 1 4.7853 -1.0224 -5.6920 19 6 0.0114 -0.5763 -2.5634 20 6 -0.3125 -1.8981 -2.3206 21 6 -1.6210 -2.3241 -2.4507 22 6 -2.6040 -1.4307 -2.8332 23 6 -2.2792 -0.1103 -3.0816 24 6 -0.9715 0.3170 -2.9465 25 1 -0.3634 -1.0160 -0.1545 26 1 -0.3633 0.3742 0.9572 27 1 -0.3633 0.6417 -0.8026 28 1 1.6895 -0.1981 2.1399 29 1 1.6653 -1.7445 1.2580 30 1 3.9394 -1.2867 2.1020 31 1 3.9465 0.2868 1.2675 32 1 3.7124 -2.4536 -0.0596 33 1 5.1439 -1.3953 -0.0836 34 1 3.8402 0.3532 -1.2533 35 1 3.8173 -1.1700 -2.1736 36 1 3.0385 2.3279 -4.7968 37 1 0.4564 -2.5971 -2.0260 38 1 -1.8747 -3.3559 -2.2570 39 1 -3.6258 -1.7644 -2.9385 40 1 -3.0471 0.5877 -3.3809 41 1 -0.7175 1.3486 -3.1409 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:17 Heat of formation + Delta-G solvation = 6.500078 kcal Electronic energy + Delta-G solvation = -20504.057948 eV Core-core repulsion = 17768.548236 eV Total energy + Delta-G solvation = -2735.509712 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80662 -39.07442 -35.74434 -34.04390 -32.95283 -31.60236 -31.39977 -28.59647 -27.44474 -25.55951 -23.43017 -23.11807 -22.44341 -21.32659 -20.29427 -18.45587 -17.46954 -16.91065 -16.24026 -15.93724 -15.76232 -15.34447 -14.98637 -14.94683 -14.51079 -14.08109 -14.00722 -13.77612 -13.57138 -13.22157 -13.00833 -12.85354 -12.74234 -12.49669 -12.38385 -12.15326 -11.83862 -11.76370 -11.62309 -11.43782 -11.32130 -10.95065 -10.89383 -10.65382 -9.50216 -9.11458 -8.83156 -8.17417 -6.26936 0.76427 0.83998 1.37591 1.38938 1.46111 2.36615 2.99558 3.28453 3.47789 4.04633 4.06373 4.14630 4.29971 4.35401 4.37536 4.47520 4.59303 4.60349 4.66175 4.78179 4.84411 4.93922 4.94940 5.02057 5.10597 5.13597 5.18243 5.23105 5.32890 5.37915 5.38661 5.44757 5.50207 5.55906 5.63108 5.67246 5.84379 5.91486 6.05272 6.17158 6.43843 6.51677 6.89076 6.94938 7.38255 8.86726 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.011571 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.193900 B = 2419.214341 C = 3995.218110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 H -0.003 1.003 4 C -0.100 4.100 5 C -0.115 4.115 6 C -0.110 4.110 7 C 0.079 3.921 8 N -0.524 5.524 9 C 0.229 3.771 10 H 0.007 0.993 11 C -0.503 4.503 12 H 0.053 0.947 13 C 0.021 3.979 14 N -0.922 5.922 15 Si 0.950 3.050 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.266 1.266 19 C -0.024 4.024 20 C -0.114 4.114 21 C -0.125 4.125 22 C -0.145 4.145 23 C -0.125 4.125 24 C -0.153 4.153 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.069 0.931 34 H -0.013 1.013 35 H 0.064 0.936 36 H 0.262 0.738 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.131 0.869 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.564 -5.924 8.172 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 H 0.015 0.985 4 C -0.138 4.138 5 C -0.153 4.153 6 C -0.148 4.148 7 C -0.050 4.050 8 N -0.249 5.249 9 C 0.123 3.877 10 H 0.025 0.975 11 C -0.542 4.542 12 H 0.071 0.929 13 C -0.179 4.179 14 N -0.561 5.561 15 Si 0.776 3.224 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.191 1.191 19 C -0.025 4.025 20 C -0.133 4.133 21 C -0.143 4.143 22 C -0.163 4.163 23 C -0.143 4.143 24 C -0.172 4.172 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.005 0.995 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.130 0.870 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.149 0.851 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.654 -6.223 8.140 11.254 hybrid contribution 1.007 1.418 -1.359 2.207 sum -3.647 -4.806 6.781 9.076 Atomic orbital electron populations 1.22155 0.94447 1.02323 1.01005 1.21650 0.95620 0.93779 0.92121 0.98462 1.21585 0.95624 1.01029 0.95551 1.21576 0.95693 1.00089 0.97898 1.21614 0.99612 0.99809 0.93778 1.21715 0.88246 0.96337 0.98655 1.62204 1.06509 1.54331 1.01812 1.18312 0.88662 0.92950 0.87809 0.97490 1.21067 1.31869 0.92683 1.08548 0.92873 1.25683 0.96446 0.94898 1.00846 1.70030 1.46952 1.01151 1.38010 0.85721 0.79137 0.77722 0.79845 1.19777 1.21104 1.19099 1.20208 0.94977 0.93969 0.93344 1.20901 0.96477 0.95135 1.00755 1.21363 0.92631 1.00287 1.00020 1.21221 1.00078 0.93036 1.01978 1.21197 0.95298 0.97086 1.00669 1.20962 0.94131 0.98796 1.03294 0.91548 0.91771 0.93836 0.90614 0.91006 0.89654 0.93608 0.91158 0.91263 0.99501 0.91734 0.92858 0.86974 0.84320 0.83857 0.85098 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 7.69 71.98 0.55 -4.55 16 2 C 0.08 2.97 2.35 44.93 0.11 3.07 16 3 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 4 C -0.10 -2.99 5.36 30.67 0.16 -2.82 16 5 C -0.12 -3.27 6.01 30.70 0.18 -3.09 16 6 C -0.11 -3.58 6.09 30.65 0.19 -3.40 16 7 C 0.08 3.42 4.97 86.33 0.43 3.85 16 8 N -0.52 -22.81 3.79 -854.80 -3.24 -26.05 16 9 C 0.23 11.51 1.84 43.42 0.08 11.59 16 10 H 0.01 0.42 6.61 -2.39 -0.02 0.41 16 11 C -0.50 -27.30 6.03 25.60 0.15 -27.15 16 12 H 0.05 2.91 7.79 -2.91 -0.02 2.88 16 13 C 0.02 1.17 5.45 84.65 0.46 1.63 16 14 N -0.92 -53.96 12.62 21.45 0.27 -53.69 16 15 Si 0.95 43.85 29.54 68.60 2.03 45.87 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 19 C -0.02 -1.07 2.41 -19.86 -0.05 -1.11 16 20 C -0.11 -4.49 7.44 22.27 0.17 -4.33 16 21 C -0.13 -4.03 10.05 22.26 0.22 -3.80 16 22 C -0.15 -4.41 10.05 22.27 0.22 -4.19 16 23 C -0.12 -4.30 10.05 22.27 0.22 -4.07 16 24 C -0.15 -6.56 8.11 22.27 0.18 -6.38 16 25 H 0.07 2.37 6.10 -2.39 -0.01 2.35 16 26 H 0.06 1.93 8.13 -2.38 -0.02 1.91 16 27 H 0.04 1.75 4.89 -2.39 -0.01 1.74 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 35 H 0.06 3.08 6.38 -2.39 -0.02 3.06 16 36 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.11 4.52 7.81 -2.91 -0.02 4.50 16 38 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 39 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 40 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 41 H 0.09 4.07 8.02 -2.91 -0.02 4.05 16 Total: -1.00 -61.12 314.52 3.33 -57.79 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.98 Total: 20.82 kcal Atomic # 6 Polarization: -48.03 SS G_CDS: 3.29 Total: -44.74 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -2.97 Total: -79.74 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -61.12 3.33 -57.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.292 kcal (2) G-P(sol) polarization free energy of solvation -61.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds