Wall clock time and date at job start Mon Mar 30 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53117 * 109.57747 * 2 1 4 4 C 1.53033 * 109.28213 * 177.60379 * 3 2 1 5 5 N 1.46850 * 109.51133 * 300.80185 * 4 3 2 6 6 C 1.46903 * 110.99990 * 185.84362 * 5 4 3 7 7 C 1.50694 * 109.47113 * 189.99787 * 6 5 4 8 8 C 1.38661 * 119.87536 * 90.00128 * 7 6 5 9 9 C 1.38612 * 120.50189 * 179.97438 * 8 7 6 10 10 C 1.37635 * 120.24911 * 0.02562 * 9 8 7 11 11 C 1.40703 * 119.74642 * 0.02562 * 10 9 8 12 12 C 1.41394 * 120.24590 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00077 * 24.27937 * 12 11 10 14 14 C 1.39948 * 119.99934 * 204.28382 * 12 11 10 15 15 N 1.30816 * 119.99810 * 17.71016 * 14 12 11 16 16 Si 1.86803 * 119.99769 * 197.71372 * 14 12 11 17 17 H 1.48499 * 109.47092 * 89.99874 * 16 14 12 18 18 H 1.48498 * 109.47019 * 209.99699 * 16 14 12 19 19 H 1.48500 * 109.47010 * 329.99986 * 16 14 12 20 20 C 1.37596 * 119.87681 * 269.72544 * 7 6 5 21 21 C 1.46845 * 111.19702 * 61.74860 * 5 4 3 22 22 C 1.53035 * 109.52322 * 298.25464 * 21 5 4 23 23 H 1.09001 * 109.47045 * 300.30268 * 1 2 3 24 24 H 1.08999 * 109.47064 * 60.29570 * 1 2 3 25 25 H 1.08993 * 109.47371 * 180.29550 * 1 2 3 26 26 H 1.08999 * 109.52512 * 239.82854 * 2 1 3 27 27 H 1.08997 * 109.51500 * 57.64969 * 3 2 1 28 28 H 1.09005 * 109.49335 * 297.53404 * 3 2 1 29 29 H 1.08997 * 109.46512 * 180.79333 * 4 3 2 30 30 H 1.08997 * 109.46610 * 60.81072 * 4 3 2 31 31 H 1.08993 * 109.47073 * 310.00010 * 6 5 4 32 32 H 1.09004 * 109.46922 * 69.99809 * 6 5 4 33 33 H 1.07999 * 119.74843 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.87559 * 180.02562 * 9 8 7 35 35 H 1.08002 * 120.12587 * 180.02562 * 10 9 8 36 36 H 0.97006 * 119.99500 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.13355 * 0.02562 * 20 7 6 38 38 H 1.09000 * 109.46601 * 58.27255 * 21 5 4 39 39 H 1.09005 * 109.46068 * 178.25164 * 21 5 4 40 40 H 1.09001 * 109.50474 * 179.12080 * 22 21 5 41 41 H 1.08996 * 109.50816 * 299.24248 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4426 0.0000 4 6 3.5721 1.4352 0.0604 5 7 4.0115 0.7407 1.2774 6 6 5.4686 0.8343 1.4400 7 6 5.9103 -0.0851 2.5493 8 6 6.2586 -1.3962 2.2622 9 6 6.6672 -2.2529 3.2724 10 6 6.7309 -1.8097 4.5738 11 6 6.3788 -0.4816 4.8771 12 6 6.4399 -0.0154 6.2106 13 1 7.0963 -0.4957 6.9210 14 6 5.6496 1.0685 6.6097 15 7 4.6215 1.4298 5.8861 16 14 6.0632 1.9992 8.1757 17 1 6.9926 3.1131 7.8586 18 1 4.8173 2.5478 8.7691 19 1 6.7083 1.0766 9.1441 20 6 5.9719 0.3812 3.8423 21 6 3.5708 -0.6600 1.2779 22 6 2.0417 -0.7151 1.2536 23 1 -0.3633 0.5185 0.8873 24 1 -0.3633 0.5092 -0.8926 25 1 -0.3634 -1.0276 0.0053 26 1 1.8943 -0.5163 -0.8881 27 1 1.6471 1.9699 0.8679 28 1 1.7173 1.9445 -0.9112 29 1 3.9401 2.4611 0.0748 30 1 3.9677 0.9197 -0.8147 31 1 5.9573 0.5429 0.5103 32 1 5.7414 1.8601 1.6879 33 1 6.2112 -1.7526 1.2438 34 1 6.9366 -3.2720 3.0373 35 1 7.0500 -2.4788 5.3593 36 1 4.0735 2.1809 6.1630 37 1 5.7040 1.4038 4.0632 38 1 3.9665 -1.1656 0.3970 39 1 3.9377 -1.1558 2.1767 40 1 1.7151 -1.7549 1.2382 41 1 1.6455 -0.2218 2.1411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057661222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:09 Heat of formation + Delta-G solvation = 0.661046 kcal Electronic energy + Delta-G solvation = -19580.999417 eV Core-core repulsion = 16845.236505 eV Total energy + Delta-G solvation = -2735.762911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.04881 -37.36823 -34.56750 -33.43879 -30.80561 -30.19150 -29.43153 -27.62498 -25.23253 -24.27462 -22.78088 -21.49443 -20.81376 -19.53972 -19.21765 -17.03753 -15.56863 -15.24025 -14.63296 -14.59417 -14.34923 -14.11174 -13.86676 -13.41333 -13.22665 -12.74007 -12.52040 -12.09069 -11.92531 -11.83583 -11.52996 -11.41250 -11.08350 -11.07081 -10.97264 -10.83761 -10.52797 -10.44369 -10.34936 -10.00930 -9.86014 -9.50054 -9.31171 -9.09812 -7.77505 -7.31874 -7.25762 -6.68184 -4.29572 2.78791 3.02212 3.11194 3.14128 3.25905 3.97881 4.42692 4.75218 4.95407 5.02565 5.05352 5.49481 5.57122 5.67536 5.73605 5.77072 5.79798 5.85765 5.91825 5.96740 6.00404 6.07066 6.22154 6.25099 6.31130 6.31952 6.43544 6.44946 6.55452 6.71183 6.73709 6.92441 7.12999 7.31113 7.42338 7.59875 7.65789 7.74509 7.94990 8.10417 8.15897 8.35523 8.67907 8.95232 9.03017 10.25117 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.005863 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.399830 B = 4774.204720 C = 5449.714906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.109 4.109 4 C 0.055 3.945 5 N -0.524 5.524 6 C 0.107 3.893 7 C -0.077 4.077 8 C -0.236 4.236 9 C -0.097 4.097 10 C -0.228 4.228 11 C 0.108 3.892 12 C -0.466 4.466 13 H 0.076 0.924 14 C 0.077 3.923 15 N -0.784 5.784 16 Si 0.905 3.095 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.136 4.136 21 C 0.057 3.943 22 C -0.111 4.111 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.280 0.720 37 H 0.120 0.880 38 H 0.020 0.980 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.113 0.663 -8.977 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.147 4.147 4 C -0.073 4.073 5 N -0.248 5.248 6 C -0.019 4.019 7 C -0.077 4.077 8 C -0.256 4.256 9 C -0.115 4.115 10 C -0.248 4.248 11 C 0.106 3.894 12 C -0.495 4.495 13 H 0.094 0.906 14 C -0.142 4.142 15 N -0.409 5.409 16 Si 0.729 3.271 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.156 4.156 21 C -0.070 4.070 22 C -0.149 4.149 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.038 0.962 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.544 1.074 -8.584 10.275 hybrid contribution 0.474 -0.012 -0.009 0.474 sum -5.071 1.062 -8.593 10.034 Atomic orbital electron populations 1.21805 0.95563 1.01345 1.01450 1.21187 0.95165 0.96401 0.98477 1.21615 0.95052 0.96402 1.01582 1.22058 0.95511 0.98826 0.90907 1.61967 1.12601 1.14465 1.35798 1.20933 0.86238 0.99168 0.95582 1.19241 1.00691 0.93623 0.94159 1.20169 1.13846 0.94814 0.96773 1.20451 1.00334 0.97062 0.93646 1.20960 1.12807 0.96053 0.94973 1.17618 0.88475 0.90109 0.93243 1.19556 1.21509 1.12559 0.95905 0.90609 1.25889 0.93391 0.96428 0.98473 1.69845 1.10832 1.23008 1.37226 0.86373 0.78803 0.80170 0.81714 1.19354 1.20378 1.18742 1.21193 1.04087 1.00196 0.90144 1.22168 0.94351 0.88964 1.01567 1.21663 0.95794 0.99574 0.97872 0.92577 0.93194 0.92981 0.92087 0.91043 0.92294 0.91289 0.95835 0.95865 0.91143 0.90116 0.89691 0.89267 0.90896 0.86220 0.96213 0.88590 0.92220 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.20 37.16 0.34 -1.25 16 2 C -0.09 -1.22 2.79 -90.50 -0.25 -1.47 16 3 C -0.11 -1.44 5.38 -26.65 -0.14 -1.58 16 4 C 0.06 0.83 5.43 -3.83 -0.02 0.81 16 5 N -0.52 -9.65 4.80 -236.12 -1.13 -10.79 16 6 C 0.11 2.11 5.42 -4.98 -0.03 2.08 16 7 C -0.08 -1.75 4.11 -104.70 -0.43 -2.18 16 8 C -0.24 -5.25 7.79 -39.29 -0.31 -5.56 16 9 C -0.10 -2.20 10.02 -39.66 -0.40 -2.60 16 10 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 11 C 0.11 2.89 5.57 -106.82 -0.60 2.30 16 12 C -0.47 -12.46 9.05 -37.74 -0.34 -12.81 16 13 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 14 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 15 N -0.78 -20.43 10.96 55.55 0.61 -19.82 16 16 Si 0.90 18.85 29.59 -169.99 -5.03 13.82 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 C -0.14 -3.52 8.34 -38.87 -0.32 -3.85 16 21 C 0.06 1.03 4.57 -3.84 -0.02 1.01 16 22 C -0.11 -1.72 5.38 -26.65 -0.14 -1.86 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16 32 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 33 H 0.08 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.08 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 36 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 37 H 0.12 3.25 6.17 -52.49 -0.32 2.92 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 2.05 5.64 -51.93 -0.29 1.76 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 322.50 15.07 4.86 4.86 Total: -1.00 -26.86 322.50 -10.74 -37.61 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.92 Total: 5.47 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -3.13 Total: -31.16 kcal Atomic # 7 Polarization: -30.08 SS G_CDS: -0.52 Total: -30.61 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.86 -10.74 -37.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.268 kcal (2) G-P(sol) polarization free energy of solvation -26.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds