Wall clock time and date at job start Mon Mar 30 2020 06:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53117 * 109.57747 * 2 1 4 4 C 1.53033 * 109.28213 * 177.60379 * 3 2 1 5 5 N 1.46850 * 109.51133 * 300.80185 * 4 3 2 6 6 C 1.46903 * 110.99990 * 185.84362 * 5 4 3 7 7 C 1.50694 * 109.47113 * 189.99787 * 6 5 4 8 8 C 1.38661 * 119.87536 * 90.00128 * 7 6 5 9 9 C 1.38612 * 120.50189 * 179.97438 * 8 7 6 10 10 C 1.37635 * 120.24911 * 0.02562 * 9 8 7 11 11 C 1.40703 * 119.74642 * 0.02562 * 10 9 8 12 12 C 1.41394 * 120.24590 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00077 * 24.27937 * 12 11 10 14 14 C 1.39948 * 119.99934 * 204.28382 * 12 11 10 15 15 N 1.30816 * 119.99810 * 17.71016 * 14 12 11 16 16 Si 1.86803 * 119.99769 * 197.71372 * 14 12 11 17 17 H 1.48499 * 109.47092 * 89.99874 * 16 14 12 18 18 H 1.48498 * 109.47019 * 209.99699 * 16 14 12 19 19 H 1.48500 * 109.47010 * 329.99986 * 16 14 12 20 20 C 1.37596 * 119.87681 * 269.72544 * 7 6 5 21 21 C 1.46845 * 111.19702 * 61.74860 * 5 4 3 22 22 C 1.53035 * 109.52322 * 298.25464 * 21 5 4 23 23 H 1.09001 * 109.47045 * 300.30268 * 1 2 3 24 24 H 1.08999 * 109.47064 * 60.29570 * 1 2 3 25 25 H 1.08993 * 109.47371 * 180.29550 * 1 2 3 26 26 H 1.08999 * 109.52512 * 239.82854 * 2 1 3 27 27 H 1.08997 * 109.51500 * 57.64969 * 3 2 1 28 28 H 1.09005 * 109.49335 * 297.53404 * 3 2 1 29 29 H 1.08997 * 109.46512 * 180.79333 * 4 3 2 30 30 H 1.08997 * 109.46610 * 60.81072 * 4 3 2 31 31 H 1.08993 * 109.47073 * 310.00010 * 6 5 4 32 32 H 1.09004 * 109.46922 * 69.99809 * 6 5 4 33 33 H 1.07999 * 119.74843 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.87559 * 180.02562 * 9 8 7 35 35 H 1.08002 * 120.12587 * 180.02562 * 10 9 8 36 36 H 0.97006 * 119.99500 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.13355 * 0.02562 * 20 7 6 38 38 H 1.09000 * 109.46601 * 58.27255 * 21 5 4 39 39 H 1.09005 * 109.46068 * 178.25164 * 21 5 4 40 40 H 1.09001 * 109.50474 * 179.12080 * 22 21 5 41 41 H 1.08996 * 109.50816 * 299.24248 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4426 0.0000 4 6 3.5721 1.4352 0.0604 5 7 4.0115 0.7407 1.2774 6 6 5.4686 0.8343 1.4400 7 6 5.9103 -0.0851 2.5493 8 6 6.2586 -1.3962 2.2622 9 6 6.6672 -2.2529 3.2724 10 6 6.7309 -1.8097 4.5738 11 6 6.3788 -0.4816 4.8771 12 6 6.4399 -0.0154 6.2106 13 1 7.0963 -0.4957 6.9210 14 6 5.6496 1.0685 6.6097 15 7 4.6215 1.4298 5.8861 16 14 6.0632 1.9992 8.1757 17 1 6.9926 3.1131 7.8586 18 1 4.8173 2.5478 8.7691 19 1 6.7083 1.0766 9.1441 20 6 5.9719 0.3812 3.8423 21 6 3.5708 -0.6600 1.2779 22 6 2.0417 -0.7151 1.2536 23 1 -0.3633 0.5185 0.8873 24 1 -0.3633 0.5092 -0.8926 25 1 -0.3634 -1.0276 0.0053 26 1 1.8943 -0.5163 -0.8881 27 1 1.6471 1.9699 0.8679 28 1 1.7173 1.9445 -0.9112 29 1 3.9401 2.4611 0.0748 30 1 3.9677 0.9197 -0.8147 31 1 5.9573 0.5429 0.5103 32 1 5.7414 1.8601 1.6879 33 1 6.2112 -1.7526 1.2438 34 1 6.9366 -3.2720 3.0373 35 1 7.0500 -2.4788 5.3593 36 1 4.0735 2.1809 6.1630 37 1 5.7040 1.4038 4.0632 38 1 3.9665 -1.1656 0.3970 39 1 3.9377 -1.1558 2.1767 40 1 1.7151 -1.7549 1.2382 41 1 1.6455 -0.2218 2.1411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057661222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:08 Heat of formation + Delta-G solvation = -12.541380 kcal Electronic energy + Delta-G solvation = -19581.571917 eV Core-core repulsion = 16845.236505 eV Total energy + Delta-G solvation = -2736.335412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.48391 -39.04697 -36.05144 -35.18943 -32.31273 -31.57929 -31.31554 -28.93382 -27.17261 -25.73013 -24.06706 -22.93429 -22.52475 -21.23318 -20.47995 -18.96300 -17.15842 -16.84286 -16.44204 -16.05860 -15.79219 -15.34863 -15.18544 -14.92525 -14.76390 -14.33230 -13.96902 -13.49306 -13.34952 -13.23028 -13.09239 -12.89322 -12.73290 -12.63318 -12.44531 -12.29960 -12.10561 -12.06219 -11.55092 -11.36799 -11.27983 -11.13774 -11.00920 -10.96527 -9.33875 -9.24609 -8.97947 -8.57924 -6.30776 0.96151 1.14779 1.38347 1.51290 1.53107 2.22346 2.70962 3.17459 3.79480 3.88075 3.93994 3.94542 4.14132 4.30015 4.37615 4.50654 4.53662 4.55956 4.64283 4.71785 4.79564 4.80407 4.86292 4.89545 4.98655 5.03641 5.08854 5.18101 5.18780 5.28483 5.32114 5.36518 5.39060 5.53548 5.58185 5.71809 6.04877 6.14252 6.17578 6.28041 6.37820 6.43546 6.73468 6.98159 7.08200 8.36957 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.005863 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.399830 B = 4774.204720 C = 5449.714906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.105 4.105 4 C 0.053 3.947 5 N -0.543 5.543 6 C 0.112 3.888 7 C -0.072 4.072 8 C -0.229 4.229 9 C -0.096 4.096 10 C -0.248 4.248 11 C 0.077 3.923 12 C -0.505 4.505 13 H 0.071 0.929 14 C 0.037 3.963 15 N -0.816 5.816 16 Si 0.979 3.021 17 H -0.263 1.263 18 H -0.268 1.268 19 H -0.260 1.260 20 C -0.162 4.162 21 C 0.062 3.938 22 C -0.108 4.108 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.286 0.714 37 H 0.098 0.902 38 H 0.030 0.970 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 0.731 -10.748 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 C -0.143 4.143 4 C -0.074 4.074 5 N -0.268 5.268 6 C -0.015 4.015 7 C -0.072 4.072 8 C -0.248 4.248 9 C -0.114 4.114 10 C -0.268 4.268 11 C 0.075 3.925 12 C -0.534 4.534 13 H 0.090 0.910 14 C -0.179 4.179 15 N -0.442 5.442 16 Si 0.800 3.200 17 H -0.187 1.187 18 H -0.193 1.193 19 H -0.184 1.184 20 C -0.182 4.182 21 C -0.065 4.065 22 C -0.146 4.146 23 H 0.067 0.933 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.238 1.131 -10.373 12.157 hybrid contribution 0.683 -0.111 0.426 0.812 sum -5.555 1.020 -9.947 11.439 Atomic orbital electron populations 1.21763 0.93902 1.02055 1.02027 1.21161 0.96518 0.95856 0.97182 1.21620 0.93583 0.96750 1.02338 1.22177 0.96825 0.98757 0.89641 1.61924 1.11560 1.14992 1.38342 1.20849 0.87546 0.98106 0.94987 1.19570 0.98997 0.94607 0.94061 1.20485 1.12121 0.94292 0.97920 1.20809 0.99177 0.98680 0.92783 1.21150 1.13633 0.95664 0.96354 1.17989 0.89426 0.91253 0.93859 1.19794 1.22838 1.14498 0.96278 0.91035 1.26708 0.92649 0.96625 1.01886 1.69916 1.11599 1.23556 1.39083 0.85259 0.78820 0.78599 0.77345 1.18729 1.19285 1.18352 1.21092 1.06220 0.99379 0.91489 1.22036 0.96029 0.88581 0.99890 1.21636 0.93947 1.00522 0.98506 0.93343 0.91297 0.92255 0.90956 0.92568 0.89372 0.90730 0.94572 0.94005 0.91634 0.87493 0.86460 0.88920 0.90352 0.88369 0.95230 0.92578 0.91070 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.20 71.98 0.66 -2.04 16 2 C -0.09 -2.07 2.79 -10.71 -0.03 -2.10 16 3 C -0.11 -2.52 5.38 30.64 0.16 -2.35 16 4 C 0.05 1.49 5.43 86.32 0.47 1.96 16 5 N -0.54 -19.65 4.80 -900.95 -4.32 -23.97 16 6 C 0.11 4.34 5.42 85.55 0.46 4.80 16 7 C -0.07 -3.32 4.11 -19.92 -0.08 -3.40 16 8 C -0.23 -9.93 7.79 22.46 0.18 -9.76 16 9 C -0.10 -4.32 10.02 22.22 0.22 -4.10 16 10 C -0.25 -12.65 9.80 22.73 0.22 -12.42 16 11 C 0.08 4.30 5.57 -21.29 -0.12 4.18 16 12 C -0.50 -28.21 9.05 23.46 0.21 -28.00 16 13 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 14 C 0.04 1.91 5.14 85.26 0.44 2.35 16 15 N -0.82 -44.16 10.96 21.83 0.24 -43.92 16 16 Si 0.98 39.48 29.59 68.60 2.03 41.52 16 17 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 18 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 20 C -0.16 -8.70 8.34 22.73 0.19 -8.51 16 21 C 0.06 2.21 4.57 86.33 0.39 2.60 16 22 C -0.11 -3.24 5.38 30.65 0.16 -3.07 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 1.45 8.02 -2.39 -0.02 1.43 16 32 H 0.07 2.57 8.08 -2.38 -0.02 2.55 16 33 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 35 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.29 14.11 8.30 -92.70 -0.77 13.34 16 37 H 0.10 5.63 6.17 -2.91 -0.02 5.61 16 38 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 2.42 5.64 -2.38 -0.01 2.41 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -60.08 322.50 2.47 -57.61 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.97 Total: 28.62 kcal Atomic # 6 Polarization: -63.41 SS G_CDS: 3.55 Total: -59.86 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -4.09 Total: -67.89 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.52 kcal Total: -60.08 2.47 -57.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057661222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.073 kcal (2) G-P(sol) polarization free energy of solvation -60.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds