Wall clock time and date at job start Mon Mar 30 2020 06:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 110.01198 * 2 1 4 4 C 1.54324 * 109.88444 * 121.11271 * 2 1 3 5 5 C 1.55137 * 103.01655 * 141.68956 * 4 2 1 6 6 C 1.54911 * 101.65576 * 324.34680 * 5 4 2 7 7 N 1.47442 * 109.88951 * 238.88167 * 2 1 3 8 8 C 1.46900 * 111.00167 * 3.85193 * 7 2 1 9 9 H 1.08996 * 109.47020 * 310.20295 * 8 7 2 10 10 C 1.50704 * 109.46612 * 70.20385 * 8 7 2 11 11 H 1.07998 * 119.99388 * 235.76923 * 10 8 7 12 12 C 1.37875 * 120.00474 * 55.76665 * 10 8 7 13 13 N 1.31513 * 119.99701 * 350.52770 * 12 10 8 14 14 Si 1.86797 * 120.00048 * 170.52248 * 12 10 8 15 15 H 1.48495 * 109.47231 * 60.00318 * 14 12 10 16 16 H 1.48498 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47091 * 300.00158 * 14 12 10 18 18 C 1.50695 * 109.47094 * 190.19676 * 8 7 2 19 19 C 1.38238 * 120.00002 * 148.53670 * 18 8 7 20 20 C 1.38232 * 120.00370 * 179.78732 * 19 18 8 21 21 C 1.38233 * 119.99562 * 0.44827 * 20 19 18 22 22 C 1.38233 * 120.00361 * 359.80593 * 21 20 19 23 23 C 1.38234 * 120.00001 * 359.97438 * 22 21 20 24 24 H 1.08992 * 109.47560 * 293.89722 * 1 2 3 25 25 H 1.09004 * 109.46622 * 53.89720 * 1 2 3 26 26 H 1.09007 * 109.47176 * 173.88915 * 1 2 3 27 27 H 1.09000 * 109.47105 * 179.65533 * 3 2 1 28 28 H 1.08998 * 109.46945 * 299.66067 * 3 2 1 29 29 H 1.09007 * 109.47084 * 59.65823 * 3 2 1 30 30 H 1.09001 * 110.70710 * 23.31036 * 4 2 1 31 31 H 1.08997 * 110.71044 * 260.07225 * 4 2 1 32 32 H 1.09003 * 110.99088 * 82.43865 * 5 4 2 33 33 H 1.08999 * 110.99186 * 206.25665 * 5 4 2 34 34 H 1.09003 * 110.37220 * 155.89732 * 6 5 4 35 35 H 1.09001 * 110.36899 * 278.23919 * 6 5 4 36 36 H 0.97001 * 119.99978 * 180.02562 * 13 12 10 37 37 H 1.08003 * 119.99350 * 0.02562 * 19 18 8 38 38 H 1.07999 * 120.00416 * 180.27398 * 20 19 18 39 39 H 1.08002 * 120.00139 * 179.82907 * 21 20 19 40 40 H 1.07998 * 120.00176 * 179.97438 * 22 21 20 41 41 H 1.07993 * 120.00283 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0549 -0.7499 1.2425 5 6 3.2891 -1.5135 0.6942 6 6 2.8189 -1.8834 -0.7347 7 7 2.0316 -0.7165 -1.1870 8 6 0.9240 -1.1341 -2.0569 9 1 0.1668 -1.6441 -1.4615 10 6 0.3152 0.0789 -2.7120 11 1 -0.7409 0.2777 -2.6044 12 6 1.1063 0.9348 -3.4486 13 7 2.4145 0.8022 -3.4283 14 14 0.3198 2.2825 -4.4755 15 1 -0.4606 3.1860 -3.5924 16 1 1.3793 3.0596 -5.1674 17 1 -0.5845 1.6730 -5.4834 18 6 1.4437 -2.0700 -3.1175 19 6 0.6298 -3.0700 -3.6160 20 6 1.1049 -3.9258 -4.5921 21 6 2.3972 -3.7874 -5.0630 22 6 3.2129 -2.7908 -4.5608 23 6 2.7362 -1.9322 -3.5880 24 1 -0.3634 0.4163 0.9395 25 1 -0.3633 0.6056 -0.8304 26 1 -0.3634 -1.0219 -0.1094 27 1 3.1435 1.4273 0.0062 28 1 1.7001 1.9530 -0.8930 29 1 1.6901 1.9567 0.8870 30 1 1.3054 -1.4472 1.6170 31 1 2.3513 -0.0465 2.0206 32 1 4.1657 -0.8664 0.6616 33 1 3.4880 -2.4085 1.2837 34 1 3.6772 -2.0384 -1.3884 35 1 2.1939 -2.7761 -0.7092 36 1 2.9712 1.4046 -3.9462 37 1 -0.3787 -3.1802 -3.2456 38 1 0.4676 -4.7043 -4.9847 39 1 2.7695 -4.4578 -5.8236 40 1 4.2227 -2.6830 -4.9285 41 1 3.3736 -1.1538 -3.1954 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063067209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:30 Heat of formation + Delta-G solvation = 39.243317 kcal Electronic energy + Delta-G solvation = -20953.837486 eV Core-core repulsion = 18219.747628 eV Total energy + Delta-G solvation = -2734.089859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89714 -39.14523 -35.32663 -33.32233 -32.72150 -31.38208 -30.33631 -28.55669 -27.32091 -25.85248 -24.36702 -23.02600 -22.15798 -21.24813 -19.35947 -18.10033 -17.39647 -16.81821 -16.26119 -16.11328 -15.57077 -15.03013 -14.80472 -14.59912 -14.13947 -13.80933 -13.71632 -13.64941 -13.24134 -13.04272 -12.92851 -12.74282 -12.46060 -12.43082 -12.27930 -11.97583 -11.75123 -11.66622 -11.52076 -11.32504 -11.12856 -11.07718 -10.79900 -10.29092 -9.42762 -9.05158 -8.34714 -7.72200 -5.92528 0.85601 0.98515 1.43518 1.47640 1.50523 2.53370 3.25931 3.41386 3.67133 3.99996 4.09200 4.25918 4.37043 4.38273 4.54069 4.55736 4.65151 4.73979 4.79903 4.90866 4.96974 4.98649 5.01713 5.06915 5.10509 5.21671 5.27141 5.30787 5.36005 5.46876 5.49645 5.51807 5.66389 5.83381 5.85174 5.87702 5.92081 6.06713 6.29700 6.41785 6.59149 6.74738 7.04442 7.26904 7.68671 9.15174 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.012165 C = 0.008081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.229704 B = 2301.205069 C = 3463.926199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.106 3.894 3 C -0.101 4.101 4 C -0.128 4.128 5 C -0.119 4.119 6 C 0.041 3.959 7 N -0.480 5.480 8 C 0.244 3.756 9 H -0.002 1.002 10 C -0.524 4.524 11 H 0.043 0.957 12 C 0.064 3.936 13 N -0.829 5.829 14 Si 0.910 3.090 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.287 1.287 18 C -0.055 4.055 19 C -0.152 4.152 20 C -0.140 4.140 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.082 4.082 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.014 0.986 36 H 0.248 0.752 37 H 0.107 0.893 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -5.211 4.878 7.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.016 3.984 3 C -0.159 4.159 4 C -0.167 4.167 5 C -0.157 4.157 6 C -0.087 4.087 7 N -0.204 5.204 8 C 0.137 3.863 9 H 0.015 0.985 10 C -0.562 4.562 11 H 0.061 0.939 12 C -0.143 4.143 13 N -0.462 5.462 14 Si 0.739 3.261 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.214 1.214 18 C -0.056 4.056 19 C -0.171 4.171 20 C -0.158 4.158 21 C -0.166 4.166 22 C -0.175 4.175 23 C -0.101 4.101 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.058 0.942 37 H 0.125 0.875 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.137 0.863 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.887 -4.786 4.510 6.841 hybrid contribution -1.105 0.467 -0.582 1.334 sum 0.781 -4.319 3.928 5.890 Atomic orbital electron populations 1.22434 0.96585 1.00984 1.01576 1.21463 0.93092 0.94841 0.88974 1.21491 0.99416 0.95480 0.99553 1.22889 0.97308 0.99065 0.97413 1.22624 0.97846 1.00103 0.95114 1.23039 0.97394 0.92784 0.95524 1.63764 1.22873 1.20160 1.13593 1.18409 0.87821 0.91672 0.88352 0.98451 1.20752 0.93504 1.08788 1.33198 0.93866 1.25138 0.94982 0.97781 0.96363 1.70160 1.02949 1.35695 1.37392 0.86416 0.78443 0.81244 0.80041 1.20350 1.21537 1.21369 1.20448 0.93625 0.92722 0.98764 1.21097 0.99372 0.96987 0.99646 1.21137 0.96505 1.00188 0.97955 1.21176 0.94516 0.99531 1.01374 1.21423 1.00181 0.97003 0.98845 1.21553 0.96405 0.96605 0.95514 0.93255 0.90882 0.94382 0.94263 0.94579 0.93012 0.91905 0.90164 0.91339 0.90094 0.92518 0.96742 0.94181 0.87509 0.84902 0.84816 0.86294 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.17 7.06 71.98 0.51 -5.66 16 2 C 0.11 4.11 0.93 3.87 0.00 4.11 16 3 C -0.10 -3.96 8.71 71.98 0.63 -3.33 16 4 C -0.13 -4.04 6.01 31.78 0.19 -3.85 16 5 C -0.12 -3.72 7.08 31.98 0.23 -3.50 16 6 C 0.04 1.58 5.16 86.77 0.45 2.03 16 7 N -0.48 -20.82 2.77 -820.32 -2.27 -23.09 16 8 C 0.24 11.47 1.38 43.42 0.06 11.53 16 9 H 0.00 -0.09 5.59 -2.39 -0.01 -0.11 16 10 C -0.52 -26.82 6.12 25.60 0.16 -26.66 16 11 H 0.04 2.27 7.13 -2.91 -0.02 2.25 16 12 C 0.06 3.28 4.82 84.65 0.41 3.69 16 13 N -0.83 -43.00 9.28 21.45 0.20 -42.80 16 14 Si 0.91 42.36 29.55 68.60 2.03 44.39 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 18 C -0.05 -2.51 3.81 -19.87 -0.08 -2.58 16 19 C -0.15 -6.37 9.70 22.27 0.22 -6.15 16 20 C -0.14 -5.05 10.05 22.27 0.22 -4.82 16 21 C -0.15 -5.21 10.05 22.27 0.22 -4.98 16 22 C -0.16 -6.15 10.05 22.27 0.22 -5.92 16 23 C -0.08 -3.71 6.35 22.27 0.14 -3.57 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 3.26 5.00 -2.38 -0.01 3.25 16 26 H 0.04 1.50 6.09 -2.38 -0.01 1.49 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.63 7.76 -2.39 -0.02 1.61 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.06 1.89 7.85 -2.39 -0.02 1.87 16 31 H 0.08 2.21 7.83 -2.39 -0.02 2.20 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 2.31 6.43 -2.39 -0.02 2.30 16 35 H 0.01 0.58 7.55 -2.39 -0.02 0.56 16 36 H 0.25 12.80 8.31 -92.71 -0.77 12.03 16 37 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 38 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 41 H 0.14 6.76 5.12 -2.91 -0.01 6.75 16 Total: -1.00 -54.29 307.77 4.53 -49.76 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.99 Total: 21.41 kcal Atomic # 6 Polarization: -53.25 SS G_CDS: 3.58 Total: -49.67 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -2.08 Total: -65.90 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -54.29 4.53 -49.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063067209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.003 kcal (2) G-P(sol) polarization free energy of solvation -54.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds