Wall clock time and date at job start Mon Mar 30 2020 06:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.88054 * 2 1 4 4 C 1.54317 * 109.88970 * 238.80210 * 2 1 3 5 5 C 1.55142 * 103.02073 * 262.87830 * 4 2 1 6 6 C 1.54902 * 101.65122 * 324.34392 * 5 4 2 7 7 N 1.47445 * 109.89127 * 121.03464 * 2 1 3 8 8 C 1.46897 * 110.99898 * 242.66355 * 7 2 1 9 9 H 1.09000 * 109.47309 * 313.37531 * 8 7 2 10 10 C 1.50697 * 109.47252 * 193.37390 * 8 7 2 11 11 H 1.08003 * 119.99924 * 303.98782 * 10 8 7 12 12 C 1.37879 * 120.00271 * 123.98237 * 10 8 7 13 13 N 1.31512 * 120.00109 * 185.99176 * 12 10 8 14 14 Si 1.86797 * 119.99767 * 5.98693 * 12 10 8 15 15 H 1.48501 * 109.47602 * 269.13858 * 14 12 10 16 16 H 1.48504 * 109.47069 * 29.14101 * 14 12 10 17 17 H 1.48504 * 109.47261 * 149.13673 * 14 12 10 18 18 C 1.50702 * 109.47554 * 73.37345 * 8 7 2 19 19 C 1.38238 * 119.99818 * 37.81556 * 18 8 7 20 20 C 1.38228 * 120.00391 * 179.78921 * 19 18 8 21 21 C 1.38234 * 119.99696 * 0.44352 * 20 19 18 22 22 C 1.38242 * 119.99978 * 359.81068 * 21 20 19 23 23 C 1.38230 * 120.00408 * 218.09637 * 18 8 7 24 24 H 1.08998 * 109.47054 * 298.97128 * 1 2 3 25 25 H 1.09001 * 109.47444 * 58.96605 * 1 2 3 26 26 H 1.08995 * 109.47436 * 178.96922 * 1 2 3 27 27 H 1.09001 * 109.46823 * 176.97998 * 3 2 1 28 28 H 1.08994 * 109.47329 * 296.98105 * 3 2 1 29 29 H 1.08997 * 109.46876 * 56.98578 * 3 2 1 30 30 H 1.09003 * 110.70439 * 21.25970 * 4 2 1 31 31 H 1.09002 * 110.70992 * 144.49354 * 4 2 1 32 32 H 1.09007 * 110.98697 * 82.43451 * 5 4 2 33 33 H 1.08996 * 110.99197 * 206.25181 * 5 4 2 34 34 H 1.08997 * 110.37402 * 278.24167 * 6 5 4 35 35 H 1.09004 * 110.37438 * 155.89717 * 6 5 4 36 36 H 0.97003 * 119.99819 * 179.97438 * 13 12 10 37 37 H 1.08005 * 119.99529 * 0.02562 * 19 18 8 38 38 H 1.07993 * 120.00732 * 180.27573 * 20 19 18 39 39 H 1.08000 * 120.00314 * 179.83670 * 21 20 19 40 40 H 1.08001 * 120.00112 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.00016 * 359.97082 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0503 1.4389 0.0000 4 6 2.0550 -0.7517 -1.2413 5 6 2.3501 -2.1719 -0.6910 6 6 2.8586 -1.8545 0.7374 7 7 2.0316 -0.7148 1.1880 8 6 2.8029 0.1843 2.0566 9 1 3.5027 0.7615 1.4523 10 6 3.5664 -0.6288 3.0700 11 1 3.0414 -1.3154 3.7176 12 6 4.9351 -0.4964 3.1703 13 7 5.6155 -1.2884 3.9699 14 14 5.8230 0.8078 2.1704 15 1 6.2419 0.2325 0.8670 16 1 4.9117 1.9564 1.9345 17 1 7.0214 1.2717 2.9148 18 6 1.8633 1.1220 2.7700 19 6 0.6362 0.6656 3.2139 20 6 -0.2239 1.5245 3.8721 21 6 0.1392 2.8422 4.0784 22 6 1.3641 3.3001 3.6299 23 6 2.2259 2.4400 2.9755 24 1 -0.3633 0.4978 0.8991 25 1 -0.3634 0.5298 -0.8806 26 1 -0.3634 -1.0274 -0.0185 27 1 3.1389 1.4315 0.0541 28 1 1.7354 1.9391 -0.9157 29 1 1.6473 1.9709 0.8617 30 1 1.2925 -0.7906 -2.0193 31 1 2.9666 -0.2866 -1.6165 32 1 1.4421 -2.7741 -0.6574 33 1 3.1229 -2.6660 -1.2797 34 1 3.9112 -1.5727 0.7116 35 1 2.7106 -2.7131 1.3924 36 1 6.5785 -1.1955 4.0402 37 1 0.3512 -0.3631 3.0496 38 1 -1.1806 1.1668 4.2227 39 1 -0.5339 3.5140 4.5903 40 1 1.6480 4.3295 3.7915 41 1 3.1829 2.7977 2.6252 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063067210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:32 Heat of formation + Delta-G solvation = 38.136314 kcal Electronic energy + Delta-G solvation = -20824.952189 eV Core-core repulsion = 18090.814327 eV Total energy + Delta-G solvation = -2734.137862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.77384 -37.85302 -33.72162 -32.12238 -31.49333 -30.21460 -29.25396 -26.95412 -26.39357 -24.59707 -22.78061 -21.76234 -20.45467 -20.09369 -17.85410 -17.10314 -16.09141 -15.35925 -15.00614 -14.64187 -14.09400 -13.79979 -13.61825 -13.02049 -12.91717 -12.75981 -12.63731 -12.49828 -11.90286 -11.72783 -11.61911 -11.28618 -11.17289 -11.02487 -10.92001 -10.75185 -10.36227 -10.16997 -10.10986 -10.00134 -9.87112 -9.75409 -9.35607 -8.70156 -8.15093 -7.70114 -7.21481 -6.22084 -4.19938 2.13992 2.20944 3.14656 3.22169 3.25524 4.26007 4.53393 4.78846 5.10638 5.24551 5.27493 5.41199 5.56490 5.62671 5.75155 5.75518 5.80997 5.94995 6.00820 6.06090 6.13629 6.18584 6.26290 6.31622 6.34100 6.40219 6.42269 6.51813 6.59694 6.70697 6.78446 6.80880 6.87684 6.96521 7.01331 7.19447 7.26132 7.37302 7.56071 7.80865 8.07262 8.13798 8.55864 8.90345 9.40466 10.90256 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.012575 C = 0.008313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.904719 B = 2226.128965 C = 3367.287694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.091 3.909 3 C -0.175 4.175 4 C -0.132 4.132 5 C -0.135 4.135 6 C 0.072 3.928 7 N -0.513 5.513 8 C 0.197 3.803 9 H 0.033 0.967 10 C -0.494 4.494 11 H 0.081 0.919 12 C 0.078 3.922 13 N -0.886 5.886 14 Si 0.861 3.139 15 H -0.276 1.276 16 H -0.260 1.260 17 H -0.285 1.285 18 C -0.015 4.015 19 C -0.100 4.100 20 C -0.129 4.129 21 C -0.151 4.151 22 C -0.126 4.126 23 C -0.137 4.137 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.266 0.734 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 4.506 -7.359 11.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.001 3.999 3 C -0.232 4.232 4 C -0.171 4.171 5 C -0.173 4.173 6 C -0.056 4.056 7 N -0.238 5.238 8 C 0.090 3.910 9 H 0.050 0.950 10 C -0.532 4.532 11 H 0.100 0.900 12 C -0.125 4.125 13 N -0.523 5.523 14 Si 0.689 3.311 15 H -0.202 1.202 16 H -0.185 1.185 17 H -0.211 1.211 18 C -0.017 4.017 19 C -0.118 4.118 20 C -0.147 4.147 21 C -0.170 4.170 22 C -0.144 4.144 23 C -0.156 4.156 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.144 0.856 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.276 4.267 -6.978 11.636 hybrid contribution 1.428 1.070 -0.782 1.948 sum -6.849 5.338 -7.760 11.646 Atomic orbital electron populations 1.21773 0.94542 1.01177 1.00706 1.21676 0.95403 0.92509 0.90270 1.22631 1.01147 0.97317 1.02143 1.22861 1.00345 0.96353 0.97537 1.22775 1.00705 0.96212 0.97645 1.22605 0.96088 0.94471 0.92414 1.63825 1.37556 1.08849 1.13560 1.19091 0.89708 0.90453 0.91718 0.94955 1.20816 0.91184 1.22755 1.18474 0.90045 1.25045 0.97301 0.95180 0.95013 1.69880 1.07645 1.37093 1.37689 0.87134 0.79803 0.83513 0.80646 1.20205 1.18495 1.21088 1.20272 0.93714 0.92590 0.95074 1.20980 0.93602 0.99826 0.97376 1.21065 0.99479 0.94027 1.00127 1.20836 0.97103 0.96017 1.02996 1.20909 0.94787 0.98898 0.99818 1.21038 0.99364 0.93960 1.01224 0.92151 0.93981 0.92864 0.92754 0.93607 0.90380 0.91814 0.92199 0.91486 0.91952 0.93475 0.90687 0.92404 0.85638 0.87365 0.87566 0.87437 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 8.69 37.16 0.32 -1.59 16 2 C 0.09 1.58 0.96 -130.61 -0.12 1.45 16 3 C -0.17 -3.06 7.03 37.16 0.26 -2.80 16 4 C -0.13 -2.06 6.01 -24.91 -0.15 -2.21 16 5 C -0.14 -2.15 7.08 -24.59 -0.17 -2.32 16 6 C 0.07 1.44 5.58 -2.30 -0.01 1.42 16 7 N -0.51 -10.34 3.81 -210.65 -0.80 -11.14 16 8 C 0.20 4.42 1.10 -70.02 -0.08 4.35 16 9 H 0.03 0.76 1.94 -51.93 -0.10 0.66 16 10 C -0.49 -13.15 7.42 -34.44 -0.26 -13.41 16 11 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 12 C 0.08 2.15 5.44 -17.82 -0.10 2.05 16 13 N -0.89 -25.95 13.96 55.43 0.77 -25.17 16 14 Si 0.86 20.62 27.12 -169.99 -4.61 16.01 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.26 -5.89 5.22 56.52 0.29 -5.59 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 C -0.02 -0.32 2.88 -104.62 -0.30 -0.63 16 19 C -0.10 -1.95 7.72 -39.58 -0.31 -2.26 16 20 C -0.13 -2.21 10.05 -39.59 -0.40 -2.61 16 21 C -0.15 -2.49 10.05 -39.58 -0.40 -2.89 16 22 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 16 23 C -0.14 -2.75 8.21 -39.59 -0.33 -3.08 16 24 H 0.06 0.98 6.46 -51.93 -0.34 0.65 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 1.03 6.27 -51.93 -0.33 0.71 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.44 4.30 -51.93 -0.22 1.21 16 30 H 0.06 0.86 7.83 -51.93 -0.41 0.45 16 31 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 1.05 7.42 -51.93 -0.39 0.67 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.13 2.51 7.65 -52.48 -0.40 2.11 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.11 2.24 6.70 -52.49 -0.35 1.89 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -27.88 308.39 -8.83 -36.71 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.41 Total: 6.05 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -2.43 Total: -27.11 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.03 Total: -36.31 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.61 Total: 16.01 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.88 -8.83 -36.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063067210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.849 kcal (2) G-P(sol) polarization free energy of solvation -27.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds