Wall clock time and date at job start Mon Mar 30 2020 06:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.88054 * 2 1 4 4 C 1.54317 * 109.88970 * 238.80210 * 2 1 3 5 5 C 1.55142 * 103.02073 * 262.87830 * 4 2 1 6 6 C 1.54902 * 101.65122 * 324.34392 * 5 4 2 7 7 N 1.47445 * 109.89127 * 121.03464 * 2 1 3 8 8 C 1.46897 * 110.99898 * 242.66355 * 7 2 1 9 9 H 1.09000 * 109.47309 * 313.37531 * 8 7 2 10 10 C 1.50697 * 109.47252 * 193.37390 * 8 7 2 11 11 H 1.08003 * 119.99924 * 303.98782 * 10 8 7 12 12 C 1.37879 * 120.00271 * 123.98237 * 10 8 7 13 13 N 1.31512 * 120.00109 * 185.99176 * 12 10 8 14 14 Si 1.86797 * 119.99767 * 5.98693 * 12 10 8 15 15 H 1.48501 * 109.47602 * 269.13858 * 14 12 10 16 16 H 1.48504 * 109.47069 * 29.14101 * 14 12 10 17 17 H 1.48504 * 109.47261 * 149.13673 * 14 12 10 18 18 C 1.50702 * 109.47554 * 73.37345 * 8 7 2 19 19 C 1.38238 * 119.99818 * 37.81556 * 18 8 7 20 20 C 1.38228 * 120.00391 * 179.78921 * 19 18 8 21 21 C 1.38234 * 119.99696 * 0.44352 * 20 19 18 22 22 C 1.38242 * 119.99978 * 359.81068 * 21 20 19 23 23 C 1.38230 * 120.00408 * 218.09637 * 18 8 7 24 24 H 1.08998 * 109.47054 * 298.97128 * 1 2 3 25 25 H 1.09001 * 109.47444 * 58.96605 * 1 2 3 26 26 H 1.08995 * 109.47436 * 178.96922 * 1 2 3 27 27 H 1.09001 * 109.46823 * 176.97998 * 3 2 1 28 28 H 1.08994 * 109.47329 * 296.98105 * 3 2 1 29 29 H 1.08997 * 109.46876 * 56.98578 * 3 2 1 30 30 H 1.09003 * 110.70439 * 21.25970 * 4 2 1 31 31 H 1.09002 * 110.70992 * 144.49354 * 4 2 1 32 32 H 1.09007 * 110.98697 * 82.43451 * 5 4 2 33 33 H 1.08996 * 110.99197 * 206.25181 * 5 4 2 34 34 H 1.08997 * 110.37402 * 278.24167 * 6 5 4 35 35 H 1.09004 * 110.37438 * 155.89717 * 6 5 4 36 36 H 0.97003 * 119.99819 * 179.97438 * 13 12 10 37 37 H 1.08005 * 119.99529 * 0.02562 * 19 18 8 38 38 H 1.07993 * 120.00732 * 180.27573 * 20 19 18 39 39 H 1.08000 * 120.00314 * 179.83670 * 21 20 19 40 40 H 1.08001 * 120.00112 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.00016 * 359.97082 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0503 1.4389 0.0000 4 6 2.0550 -0.7517 -1.2413 5 6 2.3501 -2.1719 -0.6910 6 6 2.8586 -1.8545 0.7374 7 7 2.0316 -0.7148 1.1880 8 6 2.8029 0.1843 2.0566 9 1 3.5027 0.7615 1.4523 10 6 3.5664 -0.6288 3.0700 11 1 3.0414 -1.3154 3.7176 12 6 4.9351 -0.4964 3.1703 13 7 5.6155 -1.2884 3.9699 14 14 5.8230 0.8078 2.1704 15 1 6.2419 0.2325 0.8670 16 1 4.9117 1.9564 1.9345 17 1 7.0214 1.2717 2.9148 18 6 1.8633 1.1220 2.7700 19 6 0.6362 0.6656 3.2139 20 6 -0.2239 1.5245 3.8721 21 6 0.1392 2.8422 4.0784 22 6 1.3641 3.3001 3.6299 23 6 2.2259 2.4400 2.9755 24 1 -0.3633 0.4978 0.8991 25 1 -0.3634 0.5298 -0.8806 26 1 -0.3634 -1.0274 -0.0185 27 1 3.1389 1.4315 0.0541 28 1 1.7354 1.9391 -0.9157 29 1 1.6473 1.9709 0.8617 30 1 1.2925 -0.7906 -2.0193 31 1 2.9666 -0.2866 -1.6165 32 1 1.4421 -2.7741 -0.6574 33 1 3.1229 -2.6660 -1.2797 34 1 3.9112 -1.5727 0.7116 35 1 2.7106 -2.7131 1.3924 36 1 6.5785 -1.1955 4.0402 37 1 0.3512 -0.3631 3.0496 38 1 -1.1806 1.1668 4.2227 39 1 -0.5339 3.5140 4.5903 40 1 1.6480 4.3295 3.7915 41 1 3.1829 2.7977 2.6252 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063067210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:32 Heat of formation + Delta-G solvation = 22.638670 kcal Electronic energy + Delta-G solvation = -20825.624217 eV Core-core repulsion = 18090.814327 eV Total energy + Delta-G solvation = -2734.809890 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27473 -39.26955 -35.50109 -33.77971 -33.11925 -31.64321 -30.67851 -28.43778 -28.07259 -26.04265 -24.42372 -23.20120 -21.89397 -21.66814 -19.32091 -19.10521 -17.52681 -16.98498 -16.53462 -16.23514 -15.66668 -15.28946 -15.03635 -14.83917 -14.43346 -14.29612 -14.09768 -13.87309 -13.43465 -13.18739 -13.09302 -12.89221 -12.69053 -12.61783 -12.33268 -12.23119 -11.92961 -11.69472 -11.61807 -11.51201 -11.35683 -11.27251 -11.25275 -10.77209 -9.58002 -9.20970 -8.83224 -8.35896 -6.36587 0.69348 0.77180 1.21002 1.24138 1.32079 2.23126 2.89090 3.19272 3.39078 3.82681 3.91951 4.08294 4.20621 4.30709 4.38287 4.41330 4.45263 4.51014 4.61502 4.72053 4.74484 4.85577 4.88197 4.94766 4.96406 5.02149 5.10008 5.17018 5.25512 5.25807 5.27659 5.37936 5.38738 5.45505 5.48575 5.65040 5.77950 5.83204 6.05046 6.13887 6.34935 6.46125 6.70716 6.80832 7.28025 8.80866 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.012575 C = 0.008313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.904719 B = 2226.128965 C = 3367.287694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.084 3.916 3 C -0.172 4.172 4 C -0.127 4.127 5 C -0.123 4.123 6 C 0.067 3.933 7 N -0.519 5.519 8 C 0.206 3.794 9 H 0.027 0.973 10 C -0.488 4.488 11 H 0.032 0.968 12 C 0.026 3.974 13 N -0.938 5.938 14 Si 0.917 3.083 15 H -0.271 1.271 16 H -0.241 1.241 17 H -0.284 1.284 18 C -0.039 4.039 19 C -0.113 4.113 20 C -0.126 4.126 21 C -0.141 4.141 22 C -0.124 4.124 23 C -0.155 4.155 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.014 0.986 35 H 0.050 0.950 36 H 0.266 0.734 37 H 0.111 0.889 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.293 6.817 -9.110 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.005 4.005 3 C -0.230 4.230 4 C -0.165 4.165 5 C -0.161 4.161 6 C -0.061 4.061 7 N -0.244 5.244 8 C 0.099 3.901 9 H 0.045 0.955 10 C -0.526 4.526 11 H 0.050 0.950 12 C -0.173 4.173 13 N -0.578 5.578 14 Si 0.742 3.258 15 H -0.196 1.196 16 H -0.165 1.165 17 H -0.210 1.210 18 C -0.040 4.040 19 C -0.131 4.131 20 C -0.144 4.144 21 C -0.159 4.159 22 C -0.142 4.142 23 C -0.174 4.174 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.033 0.967 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.533 6.590 -8.746 15.194 hybrid contribution 1.974 0.327 -0.174 2.009 sum -8.559 6.917 -8.919 14.165 Atomic orbital electron populations 1.21711 0.92721 1.01670 1.01398 1.21879 0.96696 0.92322 0.89639 1.22583 0.99670 0.97578 1.03147 1.22868 1.01192 0.95134 0.97353 1.22716 1.01646 0.97224 0.94479 1.22551 0.94549 0.93877 0.95103 1.63703 1.36626 1.08811 1.15251 1.18867 0.90086 0.90205 0.90931 0.95544 1.20914 0.91415 1.22053 1.18235 0.95004 1.25750 0.98119 0.97186 0.96239 1.70025 1.07893 1.39474 1.40376 0.86227 0.78745 0.81614 0.79223 1.19620 1.16455 1.21042 1.20149 0.94399 0.93086 0.96395 1.20942 0.93898 0.99717 0.98538 1.21394 1.00033 0.94155 0.98825 1.21286 0.97036 0.96063 1.01530 1.21265 0.94576 0.99921 0.98426 1.21101 0.99762 0.94041 1.02489 0.93326 0.91292 0.92560 0.94849 0.90840 0.91297 0.88603 0.92389 0.89926 0.90367 0.96712 0.93179 0.92487 0.87127 0.84481 0.83684 0.84432 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.29 8.69 71.98 0.63 -2.67 16 2 C 0.08 2.76 0.96 3.87 0.00 2.76 16 3 C -0.17 -5.73 7.03 71.98 0.51 -5.22 16 4 C -0.13 -3.59 6.01 31.78 0.19 -3.40 16 5 C -0.12 -3.72 7.08 31.98 0.23 -3.49 16 6 C 0.07 2.79 5.58 86.77 0.48 3.27 16 7 N -0.52 -21.29 3.81 -820.35 -3.12 -24.41 16 8 C 0.21 9.54 1.10 43.42 0.05 9.59 16 9 H 0.03 1.27 1.94 -2.39 0.00 1.26 16 10 C -0.49 -27.58 7.42 25.60 0.19 -27.39 16 11 H 0.03 2.06 8.06 -2.91 -0.02 2.03 16 12 C 0.03 1.49 5.44 84.66 0.46 1.95 16 13 N -0.94 -58.15 13.96 21.45 0.30 -57.85 16 14 Si 0.92 43.91 27.12 68.60 1.86 45.77 16 15 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.24 -10.66 5.22 99.48 0.52 -10.14 16 17 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 18 C -0.04 -1.66 2.88 -19.87 -0.06 -1.72 16 19 C -0.11 -4.38 7.72 22.27 0.17 -4.20 16 20 C -0.13 -4.00 10.05 22.27 0.22 -3.78 16 21 C -0.14 -4.09 10.05 22.27 0.22 -3.87 16 22 C -0.12 -3.94 10.05 22.27 0.22 -3.72 16 23 C -0.16 -6.06 8.21 22.27 0.18 -5.88 16 24 H 0.05 1.48 6.46 -2.39 -0.02 1.46 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.03 1.23 6.27 -2.39 -0.01 1.21 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 2.44 4.30 -2.39 -0.01 2.43 16 30 H 0.10 2.14 7.83 -2.39 -0.02 2.12 16 31 H 0.06 1.67 7.86 -2.39 -0.02 1.65 16 32 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.01 0.69 7.42 -2.39 -0.02 0.67 16 35 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.11 4.54 7.65 -2.91 -0.02 4.51 16 38 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 39 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 41 H 0.10 4.04 6.70 -2.91 -0.02 4.02 16 Total: -1.00 -64.83 308.39 3.55 -61.28 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.81 Total: 22.99 kcal Atomic # 6 Polarization: -51.48 SS G_CDS: 3.70 Total: -47.77 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -2.83 Total: -82.26 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.86 Total: 45.77 kcal Total: -64.83 3.55 -61.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063067210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.919 kcal (2) G-P(sol) polarization free energy of solvation -64.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds