Wall clock time and date at job start Mon Mar 30 2020 07:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.05492 * 2 1 4 4 C 1.54270 * 110.02763 * 121.41139 * 2 1 3 5 5 C 1.54891 * 104.19247 * 142.89798 * 4 2 1 6 6 C 1.54898 * 102.74762 * 322.05846 * 5 4 2 7 7 C 1.53872 * 110.03358 * 238.57890 * 2 1 3 8 8 H 1.08998 * 110.06984 * 121.40903 * 7 2 1 9 9 N 1.46900 * 110.03228 * 0.02562 * 7 2 1 10 10 C 1.46902 * 110.99825 * 156.37819 * 9 7 2 11 11 H 1.08998 * 109.47063 * 324.99830 * 10 9 7 12 12 C 1.50701 * 109.47163 * 85.00269 * 10 9 7 13 13 H 1.08001 * 119.99433 * 234.84604 * 12 10 9 14 14 C 1.37868 * 120.00269 * 54.83636 * 12 10 9 15 15 N 1.31520 * 119.99979 * 2.43470 * 14 12 10 16 16 Si 1.86798 * 120.00274 * 182.43304 * 14 12 10 17 17 H 1.48503 * 109.47140 * 90.00177 * 16 14 12 18 18 H 1.48503 * 109.47232 * 210.00334 * 16 14 12 19 19 H 1.48503 * 109.46891 * 329.99957 * 16 14 12 20 20 C 1.50704 * 109.46855 * 204.99923 * 10 9 7 21 21 C 1.38234 * 119.99638 * 150.57009 * 20 10 9 22 22 C 1.38237 * 119.99760 * 179.97438 * 21 20 10 23 23 C 1.38236 * 119.99988 * 0.07377 * 22 21 20 24 24 C 1.38232 * 120.00060 * 359.90194 * 23 22 21 25 25 C 1.38233 * 120.00114 * 330.54888 * 20 10 9 26 26 H 1.08996 * 109.47322 * 181.41599 * 1 2 3 27 27 H 1.09003 * 109.47301 * 301.42146 * 1 2 3 28 28 H 1.09006 * 109.46858 * 61.41683 * 1 2 3 29 29 H 1.08994 * 110.48668 * 24.22127 * 4 2 1 30 30 H 1.08999 * 110.48684 * 261.57008 * 4 2 1 31 31 H 1.08997 * 110.75935 * 203.74438 * 5 4 2 32 32 H 1.09001 * 110.76050 * 80.37026 * 5 4 2 33 33 H 1.08998 * 110.48276 * 279.26202 * 6 5 4 34 34 H 1.08998 * 110.59880 * 156.67834 * 6 5 4 35 35 H 1.00897 * 110.99647 * 280.33213 * 9 7 2 36 36 H 0.96999 * 119.99621 * 180.02562 * 15 14 12 37 37 H 1.07997 * 120.00339 * 359.70258 * 21 20 10 38 38 H 1.08008 * 119.99822 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99649 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.00058 * 180.02562 * 24 23 22 41 41 H 1.07994 * 119.99750 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0583 -0.7554 1.2370 5 6 3.3136 -1.5007 0.7193 6 6 2.8874 -1.9406 -0.7034 7 6 2.0571 -0.7536 -1.2336 8 1 2.6865 -0.0959 -1.8331 9 7 0.9329 -1.2460 -2.0408 10 6 1.3391 -1.4550 -3.4370 11 1 2.0671 -0.6952 -3.7212 12 6 1.9571 -2.8219 -3.5813 13 1 2.9466 -2.9254 -4.0015 14 6 1.2594 -3.9400 -3.1766 15 7 0.0361 -3.8185 -2.7091 16 14 2.0516 -5.6278 -3.2921 17 1 2.7714 -5.9244 -2.0275 18 1 1.0012 -6.6534 -3.5161 19 1 3.0120 -5.6473 -4.4247 20 6 0.1310 -1.3529 -4.3322 21 6 0.2711 -0.9106 -5.6344 22 6 -0.8369 -0.8175 -6.4557 23 6 -2.0852 -1.1653 -5.9744 24 6 -2.2252 -1.6081 -4.6724 25 6 -1.1171 -1.7021 -3.8514 26 1 -0.3634 -1.0273 0.0254 27 1 -0.3634 0.5358 0.8770 28 1 -0.3633 0.4917 -0.9025 29 1 1.3142 -1.4659 1.5967 30 1 2.3296 -0.0535 2.0255 31 1 3.5325 -2.3678 1.3425 32 1 4.1710 -0.8290 0.6753 33 1 2.2772 -2.8426 -0.6569 34 1 3.7625 -2.1052 -1.3321 35 1 0.5471 -2.0907 -1.6462 36 1 -0.4545 -4.6052 -2.4241 37 1 1.2455 -0.6336 -6.0087 38 1 -0.7275 -0.4714 -7.4730 39 1 -2.9508 -1.0929 -6.6162 40 1 -3.2004 -1.8802 -4.2965 41 1 -1.2263 -2.0484 -2.8343 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071207203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:54 Heat of formation + Delta-G solvation = 15.422407 kcal Electronic energy + Delta-G solvation = -20298.295550 eV Core-core repulsion = 17563.172740 eV Total energy + Delta-G solvation = -2735.122811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.60929 -37.71684 -34.57948 -31.55923 -30.51917 -29.97180 -29.55812 -26.82860 -25.38727 -24.08079 -22.51070 -21.25115 -20.13786 -19.81248 -18.27351 -16.57103 -15.97602 -15.17911 -15.00459 -14.34103 -13.87072 -13.72143 -13.19697 -12.95453 -12.68701 -12.62753 -12.14469 -11.89800 -11.68556 -11.42574 -11.35125 -11.28373 -10.97559 -10.68098 -10.51009 -10.24513 -10.12354 -10.07267 -10.05650 -9.91868 -9.63699 -9.51967 -9.46476 -8.65099 -7.74647 -7.37383 -6.94390 -6.02169 -4.27581 2.57762 2.69336 3.19933 3.28602 3.31540 4.30081 5.02242 5.14636 5.24603 5.25696 5.35564 5.74815 5.87773 5.91359 6.01664 6.08691 6.11530 6.16419 6.20606 6.25311 6.27964 6.43349 6.49769 6.58514 6.59970 6.71409 6.79719 6.87673 6.92228 6.96448 6.99086 7.16221 7.19866 7.22941 7.37245 7.59380 7.68958 7.84489 8.03810 8.11965 8.31087 8.48670 8.88825 9.16784 9.43987 10.82307 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.009293 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.077376 B = 3012.151097 C = 4109.324573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.089 4.089 3 H 0.057 0.943 4 C -0.119 4.119 5 C -0.128 4.128 6 C -0.135 4.135 7 C 0.098 3.902 8 H 0.058 0.942 9 N -0.678 5.678 10 C 0.236 3.764 11 H 0.033 0.967 12 C -0.530 4.530 13 H 0.055 0.945 14 C 0.074 3.926 15 N -0.879 5.879 16 Si 0.887 3.113 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.017 4.017 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.050 4.050 26 H 0.054 0.946 27 H 0.026 0.974 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.368 0.632 36 H 0.265 0.735 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 4.800 3.530 5.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.108 4.108 3 H 0.076 0.924 4 C -0.157 4.157 5 C -0.166 4.166 6 C -0.174 4.174 7 C -0.014 4.014 8 H 0.076 0.924 9 N -0.313 5.313 10 C 0.127 3.873 11 H 0.051 0.949 12 C -0.569 4.569 13 H 0.073 0.927 14 C -0.129 4.129 15 N -0.517 5.517 16 Si 0.715 3.285 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.018 4.018 21 C -0.155 4.155 22 C -0.163 4.163 23 C -0.172 4.172 24 C -0.167 4.167 25 C -0.069 4.069 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.194 0.806 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.000 5.287 3.482 6.331 hybrid contribution 0.988 -2.058 -0.250 2.296 sum 0.989 3.230 3.232 4.675 Atomic orbital electron populations 1.21489 0.94487 1.01686 0.99889 1.21782 0.96684 0.97949 0.94361 0.92415 1.22441 0.97374 0.98645 0.97221 1.22499 0.97232 0.99048 0.97862 1.23009 1.00489 0.99757 0.94165 1.21955 0.91682 0.94496 0.93232 0.92357 1.61065 1.27951 1.39380 1.02949 1.18153 0.89263 0.94076 0.85760 0.94905 1.21667 1.01854 0.91755 1.41662 0.92676 1.24917 0.94408 0.98797 0.94737 1.69600 1.09612 1.29755 1.42778 0.86669 0.79211 0.84191 0.78463 1.20603 1.21117 1.20040 1.20209 0.95863 0.92216 0.93521 1.20838 0.97279 1.02620 0.94742 1.20734 0.93345 1.03668 0.98527 1.20745 0.96425 1.03851 0.96196 1.21087 0.98538 1.02514 0.94570 1.21316 0.90734 0.93657 1.01177 0.92678 0.95468 0.91673 0.91994 0.92966 0.92807 0.92479 0.91139 0.92362 0.80577 0.92408 0.88032 0.88285 0.88471 0.88254 0.83813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 8.06 37.16 0.30 -1.66 16 2 C -0.09 -1.45 3.50 -89.50 -0.31 -1.76 16 3 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.12 -1.78 6.36 -25.07 -0.16 -1.94 16 5 C -0.13 -1.99 6.91 -24.73 -0.17 -2.16 16 6 C -0.13 -2.53 5.46 -25.07 -0.14 -2.67 16 7 C 0.10 1.86 3.20 -66.60 -0.21 1.65 16 8 H 0.06 1.13 7.46 -51.93 -0.39 0.74 16 9 N -0.68 -14.45 3.40 -101.01 -0.34 -14.79 16 10 C 0.24 5.49 2.50 -70.01 -0.18 5.32 16 11 H 0.03 0.76 7.39 -51.93 -0.38 0.38 16 12 C -0.53 -13.26 7.80 -34.44 -0.27 -13.53 16 13 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 14 C 0.07 1.84 5.06 -17.82 -0.09 1.75 16 15 N -0.88 -21.81 7.97 55.43 0.44 -21.36 16 16 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 C -0.02 -0.39 4.79 -104.62 -0.50 -0.89 16 21 C -0.14 -2.94 9.70 -39.58 -0.38 -3.33 16 22 C -0.14 -2.85 10.05 -39.58 -0.40 -3.25 16 23 C -0.15 -3.00 10.05 -39.58 -0.40 -3.40 16 24 C -0.15 -3.09 10.05 -39.58 -0.40 -3.49 16 25 C -0.05 -1.15 7.66 -39.58 -0.30 -1.45 16 26 H 0.05 0.99 7.44 -51.93 -0.39 0.60 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 1.16 7.81 -51.93 -0.41 0.76 16 29 H 0.06 0.95 7.84 -51.93 -0.41 0.54 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.50 7.58 -51.93 -0.39 1.11 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.37 8.43 4.43 -39.29 -0.17 8.26 16 36 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 37 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 38 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.14 3.44 5.60 -52.49 -0.29 3.14 16 LS Contribution 316.12 15.07 4.76 4.76 Total: -1.00 -24.45 316.12 -10.37 -34.82 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -6.60 Total: 12.17 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -3.61 Total: -30.81 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.10 Total: -36.16 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -24.45 -10.37 -34.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071207203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.247 kcal (2) G-P(sol) polarization free energy of solvation -24.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds