Wall clock time and date at job start Mon Mar 30 2020 07:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.05492 * 2 1 4 4 C 1.54270 * 110.02763 * 121.41139 * 2 1 3 5 5 C 1.54891 * 104.19247 * 142.89798 * 4 2 1 6 6 C 1.54898 * 102.74762 * 322.05846 * 5 4 2 7 7 C 1.53872 * 110.03358 * 238.57890 * 2 1 3 8 8 H 1.08998 * 110.06984 * 121.40903 * 7 2 1 9 9 N 1.46900 * 110.03228 * 0.02562 * 7 2 1 10 10 C 1.46902 * 110.99825 * 156.37819 * 9 7 2 11 11 H 1.08998 * 109.47063 * 324.99830 * 10 9 7 12 12 C 1.50701 * 109.47163 * 85.00269 * 10 9 7 13 13 H 1.08001 * 119.99433 * 234.84604 * 12 10 9 14 14 C 1.37868 * 120.00269 * 54.83636 * 12 10 9 15 15 N 1.31520 * 119.99979 * 2.43470 * 14 12 10 16 16 Si 1.86798 * 120.00274 * 182.43304 * 14 12 10 17 17 H 1.48503 * 109.47140 * 90.00177 * 16 14 12 18 18 H 1.48503 * 109.47232 * 210.00334 * 16 14 12 19 19 H 1.48503 * 109.46891 * 329.99957 * 16 14 12 20 20 C 1.50704 * 109.46855 * 204.99923 * 10 9 7 21 21 C 1.38234 * 119.99638 * 150.57009 * 20 10 9 22 22 C 1.38237 * 119.99760 * 179.97438 * 21 20 10 23 23 C 1.38236 * 119.99988 * 0.07377 * 22 21 20 24 24 C 1.38232 * 120.00060 * 359.90194 * 23 22 21 25 25 C 1.38233 * 120.00114 * 330.54888 * 20 10 9 26 26 H 1.08996 * 109.47322 * 181.41599 * 1 2 3 27 27 H 1.09003 * 109.47301 * 301.42146 * 1 2 3 28 28 H 1.09006 * 109.46858 * 61.41683 * 1 2 3 29 29 H 1.08994 * 110.48668 * 24.22127 * 4 2 1 30 30 H 1.08999 * 110.48684 * 261.57008 * 4 2 1 31 31 H 1.08997 * 110.75935 * 203.74438 * 5 4 2 32 32 H 1.09001 * 110.76050 * 80.37026 * 5 4 2 33 33 H 1.08998 * 110.48276 * 279.26202 * 6 5 4 34 34 H 1.08998 * 110.59880 * 156.67834 * 6 5 4 35 35 H 1.00897 * 110.99647 * 280.33213 * 9 7 2 36 36 H 0.96999 * 119.99621 * 180.02562 * 15 14 12 37 37 H 1.07997 * 120.00339 * 359.70258 * 21 20 10 38 38 H 1.08008 * 119.99822 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99649 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.00058 * 180.02562 * 24 23 22 41 41 H 1.07994 * 119.99750 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0583 -0.7554 1.2370 5 6 3.3136 -1.5007 0.7193 6 6 2.8874 -1.9406 -0.7034 7 6 2.0571 -0.7536 -1.2336 8 1 2.6865 -0.0959 -1.8331 9 7 0.9329 -1.2460 -2.0408 10 6 1.3391 -1.4550 -3.4370 11 1 2.0671 -0.6952 -3.7212 12 6 1.9571 -2.8219 -3.5813 13 1 2.9466 -2.9254 -4.0015 14 6 1.2594 -3.9400 -3.1766 15 7 0.0361 -3.8185 -2.7091 16 14 2.0516 -5.6278 -3.2921 17 1 2.7714 -5.9244 -2.0275 18 1 1.0012 -6.6534 -3.5161 19 1 3.0120 -5.6473 -4.4247 20 6 0.1310 -1.3529 -4.3322 21 6 0.2711 -0.9106 -5.6344 22 6 -0.8369 -0.8175 -6.4557 23 6 -2.0852 -1.1653 -5.9744 24 6 -2.2252 -1.6081 -4.6724 25 6 -1.1171 -1.7021 -3.8514 26 1 -0.3634 -1.0273 0.0254 27 1 -0.3634 0.5358 0.8770 28 1 -0.3633 0.4917 -0.9025 29 1 1.3142 -1.4659 1.5967 30 1 2.3296 -0.0535 2.0255 31 1 3.5325 -2.3678 1.3425 32 1 4.1710 -0.8290 0.6753 33 1 2.2772 -2.8426 -0.6569 34 1 3.7625 -2.1052 -1.3321 35 1 0.5471 -2.0907 -1.6462 36 1 -0.4545 -4.6052 -2.4241 37 1 1.2455 -0.6336 -6.0087 38 1 -0.7275 -0.4714 -7.4730 39 1 -2.9508 -1.0929 -6.6162 40 1 -3.2004 -1.8802 -4.2965 41 1 -1.2263 -2.0484 -2.8343 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071207203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:54 Heat of formation + Delta-G solvation = 6.251579 kcal Electronic energy + Delta-G solvation = -20298.693227 eV Core-core repulsion = 17563.172740 eV Total energy + Delta-G solvation = -2735.520488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.18984 -39.23926 -36.27364 -33.36874 -31.93049 -31.55708 -31.17752 -28.52874 -27.01427 -25.49764 -24.25535 -22.88213 -21.53109 -21.48285 -19.72805 -18.43903 -17.55222 -16.81684 -16.64839 -15.91485 -15.44667 -15.32596 -14.89694 -14.41928 -14.19628 -14.13382 -13.72999 -13.45831 -13.35372 -13.14161 -13.03060 -12.82383 -12.71729 -12.45497 -12.05116 -11.81279 -11.67300 -11.56382 -11.46671 -11.36824 -11.22926 -11.16537 -11.04597 -10.53004 -9.39535 -9.07134 -8.67846 -7.89684 -6.23538 0.91514 1.06109 1.34546 1.39495 1.44791 2.39581 3.13328 3.42894 3.83975 3.88725 3.99991 4.28764 4.40826 4.42566 4.57122 4.62183 4.66656 4.76652 4.84236 4.87468 4.91883 4.92243 5.01264 5.12481 5.15941 5.21580 5.27027 5.30147 5.37308 5.47887 5.56686 5.60120 5.67214 5.68558 5.73271 5.83534 5.95866 6.14079 6.15557 6.43232 6.57622 6.66474 7.08239 7.33752 7.51677 8.88139 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.009293 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.077376 B = 3012.151097 C = 4109.324573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.132 4.132 7 C 0.090 3.910 8 H 0.049 0.951 9 N -0.673 5.673 10 C 0.238 3.762 11 H 0.020 0.980 12 C -0.543 4.543 13 H 0.037 0.963 14 C 0.048 3.952 15 N -0.882 5.882 16 Si 0.930 3.070 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.282 1.282 20 C -0.042 4.042 21 C -0.154 4.154 22 C -0.142 4.142 23 C -0.150 4.150 24 C -0.156 4.156 25 C -0.067 4.067 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.042 0.958 35 H 0.358 0.642 36 H 0.264 0.736 37 H 0.106 0.894 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 5.507 3.813 6.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.171 4.171 7 C -0.021 4.021 8 H 0.067 0.933 9 N -0.307 5.307 10 C 0.129 3.871 11 H 0.038 0.962 12 C -0.582 4.582 13 H 0.055 0.945 14 C -0.154 4.154 15 N -0.520 5.520 16 Si 0.757 3.243 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.208 1.208 20 C -0.043 4.043 21 C -0.173 4.173 22 C -0.160 4.160 23 C -0.168 4.168 24 C -0.174 4.174 25 C -0.086 4.086 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.184 0.816 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.137 0.863 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.556 6.007 3.772 7.114 hybrid contribution 1.147 -2.243 -0.398 2.550 sum 0.591 3.764 3.374 5.089 Atomic orbital electron populations 1.21382 0.94668 1.00522 1.00171 1.21771 0.96457 0.98578 0.93613 0.90786 1.22404 0.96684 0.98814 0.97062 1.22467 0.98164 0.99846 0.95304 1.22870 0.99268 0.98430 0.96549 1.22118 0.91236 0.94679 0.94110 0.93267 1.61095 1.28768 1.38559 1.02283 1.18072 0.89323 0.92721 0.87033 0.96190 1.21709 1.01314 0.93098 1.42126 0.94454 1.25294 0.94842 1.00556 0.94742 1.69717 1.09795 1.29881 1.42601 0.86009 0.78374 0.81805 0.78086 1.20295 1.21092 1.20754 1.20300 0.95914 0.93763 0.94348 1.21064 0.98512 1.03090 0.94600 1.21116 0.92736 1.02424 0.99710 1.21151 0.97600 1.02119 0.95930 1.21366 0.98733 1.02186 0.95151 1.21216 0.91523 0.94929 1.00931 0.94658 0.92887 0.93472 0.92523 0.90005 0.91829 0.90713 0.94187 0.93943 0.81637 0.92611 0.87576 0.84997 0.84876 0.86283 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.57 8.06 71.98 0.58 -2.99 16 2 C -0.09 -2.69 3.50 -10.07 -0.04 -2.72 16 3 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.11 -3.09 6.36 31.67 0.20 -2.89 16 5 C -0.12 -3.52 6.91 31.89 0.22 -3.29 16 6 C -0.13 -5.04 5.46 31.67 0.17 -4.87 16 7 C 0.09 3.47 3.20 45.64 0.15 3.62 16 8 H 0.05 1.96 7.46 -2.39 -0.02 1.94 16 9 N -0.67 -29.73 3.40 -473.47 -1.61 -31.34 16 10 C 0.24 11.50 2.50 43.42 0.11 11.61 16 11 H 0.02 0.98 7.39 -2.39 -0.02 0.96 16 12 C -0.54 -28.21 7.80 25.60 0.20 -28.01 16 13 H 0.04 2.01 7.81 -2.91 -0.02 1.99 16 14 C 0.05 2.42 5.06 84.65 0.43 2.85 16 15 N -0.88 -44.76 7.97 21.45 0.17 -44.59 16 16 Si 0.93 42.20 29.54 68.60 2.03 44.22 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 C -0.04 -1.99 4.79 -19.87 -0.10 -2.09 16 21 C -0.15 -6.63 9.70 22.27 0.22 -6.42 16 22 C -0.14 -5.28 10.05 22.27 0.22 -5.06 16 23 C -0.15 -5.44 10.05 22.27 0.22 -5.21 16 24 C -0.16 -6.29 10.05 22.27 0.22 -6.06 16 25 C -0.07 -3.11 7.66 22.27 0.17 -2.93 16 26 H 0.03 1.27 7.44 -2.39 -0.02 1.25 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.68 7.81 -2.38 -0.02 1.66 16 29 H 0.06 1.63 7.84 -2.39 -0.02 1.61 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.76 7.58 -2.39 -0.02 1.74 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.36 17.11 4.43 -89.70 -0.40 16.71 16 36 H 0.26 13.07 8.31 -92.71 -0.77 12.30 16 37 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 38 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 39 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 40 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 41 H 0.13 6.21 5.60 -2.91 -0.02 6.19 16 Total: -1.00 -53.19 316.12 4.17 -49.02 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: 0.60 Total: 37.16 kcal Atomic # 6 Polarization: -57.47 SS G_CDS: 2.98 Total: -54.48 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -1.44 Total: -75.93 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -53.19 4.17 -49.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071207203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.276 kcal (2) G-P(sol) polarization free energy of solvation -53.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds