Wall clock time and date at job start Mon Mar 30 2020 07:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47332 * 2 1 4 4 H 1.08994 * 110.01561 * 54.93723 * 3 2 1 5 5 C 1.53877 * 110.03171 * 293.54506 * 3 2 1 6 6 C 1.54261 * 106.59999 * 240.71286 * 5 3 2 7 7 C 1.54890 * 104.19705 * 336.39334 * 6 5 3 8 8 H 1.08998 * 110.91254 * 279.55207 * 7 6 5 9 9 N 1.46501 * 110.75564 * 156.25582 * 7 6 5 10 10 C 1.38858 * 120.00108 * 91.66980 * 9 7 6 11 11 C 1.39570 * 119.83829 * 359.72539 * 10 9 7 12 12 C 1.36343 * 120.15764 * 179.75660 * 11 10 9 13 13 C 1.40889 * 119.83293 * 0.53718 * 12 11 10 14 14 C 1.41142 * 120.15469 * 179.73757 * 13 12 11 15 15 H 1.08003 * 119.99664 * 334.52988 * 14 13 12 16 16 C 1.39860 * 120.00311 * 154.52005 * 14 13 12 17 17 N 1.30914 * 119.99953 * 343.05130 * 16 14 13 18 18 Si 1.86804 * 120.00282 * 163.04608 * 16 14 13 19 19 H 1.48493 * 109.46961 * 60.00194 * 18 16 14 20 20 H 1.48502 * 109.46962 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.46818 * 300.00070 * 18 16 14 22 22 C 1.40880 * 119.69154 * 359.71439 * 13 12 11 23 23 C 1.36336 * 119.83722 * 0.02562 * 22 13 12 24 24 C 1.54262 * 110.03168 * 176.38173 * 3 2 1 25 25 H 1.08997 * 109.46851 * 300.00198 * 1 2 3 26 26 H 1.09004 * 109.47048 * 59.99898 * 1 2 3 27 27 H 1.09000 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46987 * 240.00246 * 2 1 3 29 29 H 1.08994 * 109.47047 * 120.00260 * 2 1 3 30 30 H 1.09003 * 110.03394 * 0.02562 * 5 3 2 31 31 H 1.09006 * 110.03004 * 121.42809 * 5 3 2 32 32 H 1.09008 * 110.48475 * 95.06751 * 6 5 3 33 33 H 1.09004 * 110.48679 * 217.71007 * 6 5 3 34 34 H 0.96996 * 119.99816 * 271.67038 * 9 7 6 35 35 H 1.07999 * 119.92290 * 359.97438 * 11 10 9 36 36 H 1.07995 * 120.08477 * 180.27773 * 12 11 10 37 37 H 0.97000 * 119.99875 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.07998 * 179.97438 * 22 13 12 39 39 H 1.08005 * 119.91920 * 179.97438 * 23 22 13 40 40 H 1.09000 * 110.48203 * 261.57230 * 24 3 2 41 41 H 1.08993 * 110.49096 * 24.21380 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6098 1.9903 0.8383 5 6 1.6713 2.1319 -1.3253 6 6 2.9999 2.5429 -1.9929 7 6 4.0021 2.6406 -0.8159 8 1 3.8934 3.5892 -0.2901 9 7 5.3775 2.4663 -1.2894 10 6 6.1311 3.5734 -1.6561 11 6 5.5730 4.8503 -1.5778 12 6 6.3087 5.9423 -1.9315 13 6 7.6316 5.7783 -2.3876 14 6 8.3975 6.9036 -2.7608 15 1 7.9053 7.8051 -3.0947 16 6 9.7937 6.8513 -2.6981 17 7 10.3829 5.9150 -1.9980 18 14 10.8179 8.1174 -3.6133 19 1 10.4871 9.4762 -3.1141 20 1 12.2601 7.8441 -3.3877 21 1 10.5209 8.0377 -5.0660 22 6 8.1865 4.4860 -2.4691 23 6 7.4409 3.4035 -2.1070 24 6 3.5799 1.4585 0.0915 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.1286 1.4390 -1.9683 31 1 1.0627 3.0149 -1.1301 32 1 3.3205 1.7822 -2.7047 33 1 2.8959 3.5091 -2.4866 34 1 5.7616 1.5775 -1.3467 35 1 4.5571 4.9739 -1.2328 36 1 5.8772 6.9301 -1.8661 37 1 11.3512 5.8786 -1.9548 38 1 9.1999 4.3530 -2.8183 39 1 7.8649 2.4121 -2.1693 40 1 3.8991 1.6333 1.1189 41 1 3.9941 0.5227 -0.2837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080453203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:09 Heat of formation + Delta-G solvation = -4.782211 kcal Electronic energy + Delta-G solvation = -18749.504320 eV Core-core repulsion = 16013.505372 eV Total energy + Delta-G solvation = -2735.998949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -39.03230 -37.50728 -34.82176 -33.17832 -31.74753 -29.50463 -28.90784 -28.26080 -26.41700 -24.04408 -22.84869 -21.51665 -20.40988 -19.72005 -19.22380 -17.14931 -16.37738 -15.61506 -15.54739 -14.96880 -14.25560 -13.82993 -13.68605 -13.31378 -13.18010 -12.76498 -12.50448 -12.17612 -12.07220 -11.73888 -11.68742 -11.51672 -11.42310 -10.99812 -10.92795 -10.85405 -10.79411 -10.51354 -10.39646 -10.37469 -10.27192 -9.63514 -9.25926 -9.16600 -8.48328 -7.45236 -6.59759 -6.33493 -4.00191 2.95816 3.13658 3.16249 3.19587 3.38944 4.08100 4.26806 4.62609 4.64920 4.81386 4.86249 5.10281 5.21724 5.24505 5.49239 5.58205 5.61647 5.67451 5.74329 5.82586 5.84385 5.87158 5.95872 6.04438 6.10019 6.17470 6.30987 6.34783 6.37116 6.45948 6.50905 6.91916 7.10365 7.24226 7.35797 7.65010 7.70635 7.84421 8.18472 8.38151 8.55096 8.73234 8.84895 9.09644 9.19238 10.41665 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.064688 B = 0.003476 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.740263 B = 8052.176250 C = 8280.082505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.090 4.090 4 H 0.070 0.930 5 C -0.119 4.119 6 C -0.140 4.140 7 C 0.160 3.840 8 H 0.079 0.921 9 N -0.753 5.753 10 C 0.095 3.905 11 C -0.161 4.161 12 C -0.188 4.188 13 C 0.074 3.926 14 C -0.468 4.468 15 H 0.071 0.929 16 C 0.074 3.926 17 N -0.810 5.810 18 Si 0.903 3.097 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.266 1.266 22 C -0.121 4.121 23 C -0.165 4.165 24 C -0.127 4.127 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.384 0.616 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.276 0.724 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.127 -9.378 2.751 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.109 4.109 4 H 0.088 0.912 5 C -0.157 4.157 6 C -0.180 4.180 7 C 0.052 3.948 8 H 0.097 0.903 9 N -0.387 5.387 10 C -0.002 4.002 11 C -0.183 4.183 12 C -0.208 4.208 13 C 0.071 3.929 14 C -0.499 4.499 15 H 0.090 0.910 16 C -0.141 4.141 17 N -0.438 5.438 18 Si 0.729 3.271 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.141 4.141 23 C -0.187 4.187 24 C -0.165 4.165 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.216 0.784 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.018 -9.331 2.875 16.273 hybrid contribution 0.695 0.246 -0.352 0.817 sum -12.323 -9.085 2.523 15.517 Atomic orbital electron populations 1.21815 0.96105 1.01249 1.01892 1.21615 0.95633 0.96350 1.01779 1.21729 0.95261 0.95839 0.98098 0.91151 1.22199 0.97659 0.99783 0.96051 1.22875 0.94775 1.01515 0.98801 1.21570 0.82462 0.97790 0.92945 0.90263 1.43891 1.11958 1.06180 1.76626 1.17369 0.91414 0.86675 1.04722 1.19892 0.98491 0.91733 1.08203 1.20574 0.96768 0.96014 1.07423 1.17483 0.91207 0.92874 0.91338 1.19328 0.90702 0.99549 1.40366 0.91050 1.25787 0.98603 0.96144 0.93530 1.69847 1.11102 1.31640 1.31196 0.86460 0.78360 0.81357 0.80972 1.19299 1.20616 1.19131 1.20914 0.99657 0.91413 1.02137 1.20044 0.93333 0.97726 1.07609 1.22671 0.94841 0.98962 1.00042 0.92878 0.92536 0.93100 0.92003 0.92229 0.91908 0.92129 0.91730 0.91707 0.78381 0.89384 0.89186 0.91327 0.86398 0.89604 0.91614 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.73 37.16 0.36 -0.83 16 2 C -0.12 -1.02 5.08 -26.73 -0.14 -1.16 16 3 C -0.09 -0.92 2.95 -89.50 -0.26 -1.18 16 4 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.12 -1.28 5.95 -25.61 -0.15 -1.43 16 6 C -0.14 -1.89 6.51 -25.07 -0.16 -2.05 16 7 C 0.16 2.35 2.96 -65.94 -0.20 2.16 16 8 H 0.08 1.28 6.35 -51.93 -0.33 0.95 16 9 N -0.75 -13.22 5.32 -50.11 -0.27 -13.49 16 10 C 0.10 2.10 6.67 -83.69 -0.56 1.54 16 11 C -0.16 -3.68 9.14 -39.77 -0.36 -4.04 16 12 C -0.19 -4.73 9.74 -39.26 -0.38 -5.11 16 13 C 0.07 2.03 5.57 -106.79 -0.59 1.43 16 14 C -0.47 -12.91 9.03 -37.87 -0.34 -13.25 16 15 H 0.07 1.90 7.90 -52.48 -0.41 1.48 16 16 C 0.07 1.94 5.15 -17.34 -0.09 1.85 16 17 N -0.81 -21.83 10.96 55.54 0.61 -21.22 16 18 Si 0.90 19.51 29.59 -169.99 -5.03 14.48 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 C -0.12 -3.22 8.63 -39.27 -0.34 -3.56 16 23 C -0.17 -3.92 9.82 -39.77 -0.39 -4.31 16 24 C -0.13 -1.50 5.98 -25.07 -0.15 -1.65 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.44 6.90 -51.93 -0.36 0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.62 6.78 -51.93 -0.35 0.27 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.38 6.14 8.57 -40.82 -0.35 5.79 16 35 H 0.09 1.80 6.16 -52.49 -0.32 1.48 16 36 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 38 H 0.12 3.25 6.19 -52.48 -0.32 2.92 16 39 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.77 7.73 -51.93 -0.40 0.37 16 LS Contribution 324.36 15.07 4.89 4.89 Total: -1.00 -27.94 324.36 -10.20 -38.13 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.64 Total: 8.81 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: -3.76 Total: -31.60 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.34 Total: -34.71 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.94 -10.20 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080453203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.353 kcal (2) G-P(sol) polarization free energy of solvation -27.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds