Wall clock time and date at job start Mon Mar 30 2020 07:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47332 * 2 1 4 4 H 1.08994 * 110.01561 * 54.93723 * 3 2 1 5 5 C 1.53877 * 110.03171 * 293.54506 * 3 2 1 6 6 C 1.54261 * 106.59999 * 240.71286 * 5 3 2 7 7 C 1.54890 * 104.19705 * 336.39334 * 6 5 3 8 8 H 1.08998 * 110.91254 * 279.55207 * 7 6 5 9 9 N 1.46501 * 110.75564 * 156.25582 * 7 6 5 10 10 C 1.38858 * 120.00108 * 91.66980 * 9 7 6 11 11 C 1.39570 * 119.83829 * 359.72539 * 10 9 7 12 12 C 1.36343 * 120.15764 * 179.75660 * 11 10 9 13 13 C 1.40889 * 119.83293 * 0.53718 * 12 11 10 14 14 C 1.41142 * 120.15469 * 179.73757 * 13 12 11 15 15 H 1.08003 * 119.99664 * 334.52988 * 14 13 12 16 16 C 1.39860 * 120.00311 * 154.52005 * 14 13 12 17 17 N 1.30914 * 119.99953 * 343.05130 * 16 14 13 18 18 Si 1.86804 * 120.00282 * 163.04608 * 16 14 13 19 19 H 1.48493 * 109.46961 * 60.00194 * 18 16 14 20 20 H 1.48502 * 109.46962 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.46818 * 300.00070 * 18 16 14 22 22 C 1.40880 * 119.69154 * 359.71439 * 13 12 11 23 23 C 1.36336 * 119.83722 * 0.02562 * 22 13 12 24 24 C 1.54262 * 110.03168 * 176.38173 * 3 2 1 25 25 H 1.08997 * 109.46851 * 300.00198 * 1 2 3 26 26 H 1.09004 * 109.47048 * 59.99898 * 1 2 3 27 27 H 1.09000 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46987 * 240.00246 * 2 1 3 29 29 H 1.08994 * 109.47047 * 120.00260 * 2 1 3 30 30 H 1.09003 * 110.03394 * 0.02562 * 5 3 2 31 31 H 1.09006 * 110.03004 * 121.42809 * 5 3 2 32 32 H 1.09008 * 110.48475 * 95.06751 * 6 5 3 33 33 H 1.09004 * 110.48679 * 217.71007 * 6 5 3 34 34 H 0.96996 * 119.99816 * 271.67038 * 9 7 6 35 35 H 1.07999 * 119.92290 * 359.97438 * 11 10 9 36 36 H 1.07995 * 120.08477 * 180.27773 * 12 11 10 37 37 H 0.97000 * 119.99875 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.07998 * 179.97438 * 22 13 12 39 39 H 1.08005 * 119.91920 * 179.97438 * 23 22 13 40 40 H 1.09000 * 110.48203 * 261.57230 * 24 3 2 41 41 H 1.08993 * 110.49096 * 24.21380 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6098 1.9903 0.8383 5 6 1.6713 2.1319 -1.3253 6 6 2.9999 2.5429 -1.9929 7 6 4.0021 2.6406 -0.8159 8 1 3.8934 3.5892 -0.2901 9 7 5.3775 2.4663 -1.2894 10 6 6.1311 3.5734 -1.6561 11 6 5.5730 4.8503 -1.5778 12 6 6.3087 5.9423 -1.9315 13 6 7.6316 5.7783 -2.3876 14 6 8.3975 6.9036 -2.7608 15 1 7.9053 7.8051 -3.0947 16 6 9.7937 6.8513 -2.6981 17 7 10.3829 5.9150 -1.9980 18 14 10.8179 8.1174 -3.6133 19 1 10.4871 9.4762 -3.1141 20 1 12.2601 7.8441 -3.3877 21 1 10.5209 8.0377 -5.0660 22 6 8.1865 4.4860 -2.4691 23 6 7.4409 3.4035 -2.1070 24 6 3.5799 1.4585 0.0915 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.1286 1.4390 -1.9683 31 1 1.0627 3.0149 -1.1301 32 1 3.3205 1.7822 -2.7047 33 1 2.8959 3.5091 -2.4866 34 1 5.7616 1.5775 -1.3467 35 1 4.5571 4.9739 -1.2328 36 1 5.8772 6.9301 -1.8661 37 1 11.3512 5.8786 -1.9548 38 1 9.1999 4.3530 -2.8183 39 1 7.8649 2.4121 -2.1693 40 1 3.8991 1.6333 1.1189 41 1 3.9941 0.5227 -0.2837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080453203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:09 Heat of formation + Delta-G solvation = -17.937928 kcal Electronic energy + Delta-G solvation = -18750.074795 eV Core-core repulsion = 16013.505372 eV Total energy + Delta-G solvation = -2736.569423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.29291 -39.10109 -36.35245 -34.76405 -33.01255 -31.36364 -30.44833 -29.44778 -27.67243 -25.82060 -23.64606 -23.14394 -22.22520 -21.03772 -20.20527 -19.09930 -17.84852 -17.11033 -16.75635 -16.50760 -15.72162 -15.13466 -14.88212 -14.43799 -14.41367 -14.20857 -13.99593 -13.83733 -13.53732 -13.38015 -12.88643 -12.74730 -12.68149 -12.55290 -12.37537 -12.16349 -12.03459 -11.76391 -11.53033 -11.36147 -11.28602 -11.19203 -11.15090 -11.01501 -10.24261 -9.39824 -8.53449 -8.13392 -6.00464 1.11253 1.19655 1.39989 1.51096 1.60201 2.27833 2.84594 2.90751 3.68926 3.77162 3.87563 3.94614 4.26483 4.37663 4.44453 4.47105 4.49594 4.58110 4.66315 4.72996 4.81915 4.88492 4.96487 5.01565 5.05830 5.16706 5.18910 5.22163 5.28649 5.31521 5.36037 5.37656 5.45689 5.53086 5.61475 5.75178 5.80978 5.93956 6.18940 6.42082 6.69621 6.90514 7.09092 7.15811 7.33111 8.49590 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.064688 B = 0.003476 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.740263 B = 8052.176250 C = 8280.082505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.085 4.085 4 H 0.077 0.923 5 C -0.112 4.112 6 C -0.137 4.137 7 C 0.150 3.850 8 H 0.067 0.933 9 N -0.744 5.744 10 C 0.117 3.883 11 C -0.168 4.168 12 C -0.197 4.197 13 C 0.034 3.966 14 C -0.507 4.507 15 H 0.067 0.933 16 C 0.031 3.969 17 N -0.844 5.844 18 Si 0.977 3.023 19 H -0.262 1.262 20 H -0.270 1.270 21 H -0.263 1.263 22 C -0.140 4.140 23 C -0.177 4.177 24 C -0.119 4.119 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.394 0.606 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.282 0.718 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.606 -10.516 3.146 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.104 4.104 4 H 0.095 0.905 5 C -0.150 4.150 6 C -0.177 4.177 7 C 0.044 3.956 8 H 0.085 0.915 9 N -0.377 5.377 10 C 0.017 3.983 11 C -0.190 4.190 12 C -0.217 4.217 13 C 0.032 3.968 14 C -0.539 4.539 15 H 0.085 0.915 16 C -0.181 4.181 17 N -0.472 5.472 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.194 1.194 21 H -0.188 1.188 22 C -0.160 4.160 23 C -0.199 4.199 24 C -0.157 4.157 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.228 0.772 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.541 -10.509 3.287 18.239 hybrid contribution 0.999 0.465 -0.408 1.175 sum -13.542 -10.044 2.880 17.104 Atomic orbital electron populations 1.21806 0.95266 1.01868 1.02049 1.21589 0.96337 0.95188 1.02000 1.21708 0.93872 0.96925 0.97891 0.90503 1.22165 0.96145 1.00406 0.96296 1.22800 0.95960 1.00699 0.98202 1.21802 0.81003 0.98744 0.94094 0.91500 1.43982 1.12821 1.05402 1.75509 1.17461 0.91008 0.87825 1.01989 1.20123 0.99485 0.91452 1.07923 1.20772 0.96426 0.97154 1.07344 1.17804 0.92476 0.93418 0.93136 1.19562 0.92023 0.99823 1.42467 0.91492 1.26617 0.99267 0.98376 0.93822 1.69914 1.11645 1.33431 1.32225 0.85335 0.76841 0.78589 0.79353 1.18650 1.19434 1.18783 1.20857 0.99373 0.92230 1.03538 1.20244 0.94050 0.97955 1.07673 1.22621 0.96121 0.97686 0.99282 0.92579 0.92540 0.92322 0.92132 0.91718 0.90699 0.91543 0.92071 0.93240 0.77184 0.86917 0.88759 0.90781 0.88239 0.87510 0.91437 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.73 71.98 0.70 -1.21 16 2 C -0.11 -1.64 5.08 30.59 0.16 -1.48 16 3 C -0.09 -1.46 2.95 -10.07 -0.03 -1.49 16 4 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 5 C -0.11 -2.10 5.95 31.32 0.19 -1.91 16 6 C -0.14 -3.43 6.51 31.67 0.21 -3.22 16 7 C 0.15 4.10 2.96 46.28 0.14 4.24 16 8 H 0.07 2.03 6.35 -2.39 -0.02 2.02 16 9 N -0.74 -24.76 5.32 -312.46 -1.66 -26.42 16 10 C 0.12 5.05 6.67 38.67 0.26 5.30 16 11 C -0.17 -7.59 9.14 22.15 0.20 -7.39 16 12 C -0.20 -10.13 9.74 22.48 0.22 -9.91 16 13 C 0.03 1.96 5.57 -21.27 -0.12 1.84 16 14 C -0.51 -29.07 9.03 23.38 0.21 -28.86 16 15 H 0.07 3.72 7.90 -2.91 -0.02 3.69 16 16 C 0.03 1.65 5.15 85.22 0.44 2.09 16 17 N -0.84 -46.83 10.96 21.82 0.24 -46.59 16 18 Si 0.98 40.75 29.59 68.60 2.03 42.78 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 20 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 C -0.14 -7.69 8.63 22.47 0.19 -7.49 16 23 C -0.18 -8.42 9.82 22.15 0.22 -8.20 16 24 C -0.12 -2.48 5.98 31.67 0.19 -2.29 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.71 6.90 -2.39 -0.02 0.69 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.25 6.78 -2.39 -0.02 1.24 16 31 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.39 11.70 8.57 -92.71 -0.79 10.90 16 35 H 0.11 4.48 6.16 -2.91 -0.02 4.46 16 36 H 0.09 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 38 H 0.10 5.74 6.19 -2.91 -0.02 5.72 16 39 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.47 7.73 -2.39 -0.02 1.45 16 Total: -1.00 -61.52 324.36 3.98 -57.53 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.21 Total: 32.68 kcal Atomic # 6 Polarization: -63.15 SS G_CDS: 3.17 Total: -59.98 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.42 Total: -73.02 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -61.52 3.98 -57.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080453203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.594 kcal (2) G-P(sol) polarization free energy of solvation -61.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds