Wall clock time and date at job start Mon Mar 30 2020 07:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47344 * 2 1 4 4 H 1.08998 * 110.02000 * 54.29968 * 3 2 1 5 5 C 1.54272 * 110.03291 * 292.91068 * 3 2 1 6 6 C 1.54966 * 104.15658 * 217.13422 * 5 3 2 7 7 C 1.54893 * 102.77864 * 37.88893 * 6 5 3 8 8 H 1.09004 * 110.48547 * 80.75994 * 7 6 5 9 9 N 1.46499 * 110.48477 * 203.40032 * 7 6 5 10 10 C 1.38849 * 120.00188 * 269.77207 * 9 7 6 11 11 C 1.39573 * 119.84255 * 359.73149 * 10 9 7 12 12 C 1.36341 * 120.15756 * 179.71402 * 11 10 9 13 13 C 1.40881 * 119.83967 * 0.55703 * 12 11 10 14 14 C 1.41139 * 120.15775 * 179.69959 * 13 12 11 15 15 H 1.07995 * 120.00064 * 155.11104 * 14 13 12 16 16 C 1.39860 * 119.99549 * 335.10417 * 14 13 12 17 17 N 1.30902 * 120.00642 * 342.13206 * 16 14 13 18 18 Si 1.86807 * 119.99801 * 162.13160 * 16 14 13 19 19 H 1.48495 * 109.47000 * 94.65183 * 18 16 14 20 20 H 1.48492 * 109.47130 * 214.65470 * 18 16 14 21 21 H 1.48500 * 109.47066 * 334.65440 * 18 16 14 22 22 C 1.40888 * 119.68776 * 359.71204 * 13 12 11 23 23 C 1.36339 * 119.83885 * 0.02562 * 22 13 12 24 24 C 1.53870 * 110.03186 * 175.69164 * 3 2 1 25 25 H 1.09006 * 109.46740 * 299.99885 * 1 2 3 26 26 H 1.09001 * 109.46816 * 59.99801 * 1 2 3 27 27 H 1.08995 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46816 * 120.00199 * 2 1 3 29 29 H 1.09006 * 109.46740 * 240.00115 * 2 1 3 30 30 H 1.08996 * 110.48513 * 335.78433 * 5 3 2 31 31 H 1.09000 * 110.48510 * 98.42441 * 5 3 2 32 32 H 1.08997 * 110.72153 * 279.57338 * 6 5 3 33 33 H 1.09004 * 110.75931 * 156.22155 * 6 5 3 34 34 H 0.96997 * 119.99446 * 89.77795 * 9 7 6 35 35 H 1.07995 * 119.91773 * 359.97438 * 11 10 9 36 36 H 1.08002 * 120.07779 * 180.27160 * 12 11 10 37 37 H 0.96993 * 120.00456 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.08274 * 180.02562 * 22 13 12 39 39 H 1.07997 * 119.91937 * 179.97438 * 23 22 13 40 40 H 1.09001 * 110.03129 * 238.57048 * 24 3 2 41 41 H 1.08992 * 110.03451 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6010 1.9934 0.8317 5 6 1.6843 2.1288 -1.3350 6 6 2.9104 3.0266 -1.6382 7 6 4.0994 2.1541 -1.1647 8 1 4.3569 1.4157 -1.9240 9 7 5.2581 2.9936 -0.8502 10 6 6.1898 3.2887 -1.8365 11 6 6.0222 2.7791 -3.1251 12 6 6.9300 3.0695 -4.1000 13 6 8.0455 3.8764 -3.8011 14 6 8.9928 4.1761 -4.8036 15 1 9.5956 5.0689 -4.7274 16 6 9.1508 3.3166 -5.8956 17 7 8.7009 2.0890 -5.8330 18 14 10.0039 3.9207 -7.4438 19 1 11.4423 3.5553 -7.3910 20 1 9.3764 3.2904 -8.6328 21 1 9.8714 5.3968 -7.5382 22 6 8.2112 4.3826 -2.4968 23 6 7.2926 4.0885 -1.5332 24 6 3.5749 1.4588 0.1086 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 1.5513 1.3864 -2.1220 31 1 0.7848 2.7345 -1.2247 32 1 2.8601 3.9537 -1.0672 33 1 2.9837 3.2328 -2.7060 34 1 5.3744 3.3432 0.0470 35 1 5.1691 2.1568 -3.3514 36 1 6.7967 2.6782 -5.0977 37 1 8.8101 1.4931 -6.5904 38 1 9.0638 5.0022 -2.2608 39 1 7.4186 4.4755 -0.5329 40 1 3.8807 2.0184 0.9926 41 1 3.9563 0.4392 0.1618 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080453209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:19 Heat of formation + Delta-G solvation = -4.474909 kcal Electronic energy + Delta-G solvation = -18839.722134 eV Core-core repulsion = 16103.736511 eV Total energy + Delta-G solvation = -2735.985623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.02212 -37.48843 -34.79819 -33.19689 -31.71277 -29.44104 -28.94847 -28.28327 -26.38176 -24.01830 -22.77888 -21.37510 -20.55559 -19.81665 -19.22971 -17.17887 -16.34204 -15.77142 -14.95385 -14.75201 -14.61365 -13.91902 -13.66694 -13.29454 -13.18933 -12.72963 -12.54916 -12.14859 -12.02326 -11.94410 -11.64159 -11.44153 -11.29305 -10.99211 -10.91592 -10.76148 -10.69671 -10.52271 -10.42532 -10.40917 -10.28387 -9.67089 -9.24191 -9.14473 -8.48224 -7.45255 -6.60585 -6.33138 -3.99547 2.94180 3.13754 3.16862 3.21962 3.38419 4.08087 4.32103 4.61954 4.67505 4.80709 4.84589 5.10986 5.24038 5.36425 5.51466 5.59014 5.62666 5.72971 5.79404 5.84000 5.87101 5.88386 5.95906 6.09675 6.10045 6.19214 6.30824 6.34589 6.39583 6.49207 6.53239 6.97534 7.01248 7.24157 7.39420 7.61360 7.73259 7.88722 8.19038 8.34243 8.55251 8.75764 8.85280 9.09707 9.19456 10.40842 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035853 B = 0.003888 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.788884 B = 7199.490550 C = 7642.181123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.089 4.089 4 H 0.068 0.932 5 C -0.118 4.118 6 C -0.140 4.140 7 C 0.160 3.840 8 H 0.078 0.922 9 N -0.754 5.754 10 C 0.094 3.906 11 C -0.164 4.164 12 C -0.124 4.124 13 C 0.074 3.926 14 C -0.468 4.468 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.809 5.809 18 Si 0.901 3.099 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.187 4.187 23 C -0.161 4.161 24 C -0.127 4.127 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.382 0.618 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.275 0.725 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.688 -2.924 8.265 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.108 4.108 4 H 0.087 0.913 5 C -0.156 4.156 6 C -0.179 4.179 7 C 0.053 3.947 8 H 0.096 0.904 9 N -0.388 5.388 10 C -0.003 4.003 11 C -0.186 4.186 12 C -0.144 4.144 13 C 0.071 3.929 14 C -0.499 4.499 15 H 0.090 0.910 16 C -0.140 4.140 17 N -0.436 5.436 18 Si 0.726 3.274 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.207 4.207 23 C -0.183 4.183 24 C -0.165 4.165 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.215 0.785 35 H 0.107 0.893 36 H 0.135 0.865 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.771 -3.251 8.004 15.419 hybrid contribution 0.487 0.275 -0.380 0.676 sum -12.284 -2.977 7.624 14.761 Atomic orbital electron populations 1.21790 0.96131 1.01260 1.01776 1.21666 0.95642 0.96337 1.01927 1.21741 0.95153 0.95789 0.98140 0.91341 1.22418 0.97924 0.98602 0.96666 1.23035 0.94733 0.98594 1.01582 1.21439 0.85511 0.91986 0.95793 0.90387 1.43961 1.25092 1.58816 1.10884 1.17371 0.91990 1.01704 0.89199 1.20118 1.01103 1.04680 0.92720 1.20930 0.93588 1.01497 0.98363 1.17485 0.92088 0.92137 0.91209 1.19353 1.18793 1.07467 1.04270 0.91019 1.25783 0.94686 0.93978 0.99560 1.69856 1.38501 1.04480 1.30766 0.86426 0.79541 0.80208 0.81198 1.19896 1.20308 1.18699 1.20543 0.99604 1.07165 0.93396 1.19806 0.96569 1.03980 0.97939 1.22473 0.94729 1.00952 0.98375 0.93008 0.92568 0.93083 0.92252 0.91785 0.91592 0.92120 0.91618 0.91522 0.78493 0.89332 0.86494 0.91395 0.89137 0.89698 0.91772 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.76 37.16 0.36 -0.88 16 2 C -0.12 -1.09 5.06 -26.73 -0.14 -1.23 16 3 C -0.09 -0.92 2.93 -89.50 -0.26 -1.19 16 4 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 5 C -0.12 -1.31 5.50 -25.03 -0.14 -1.44 16 6 C -0.14 -1.94 6.58 -24.70 -0.16 -2.10 16 7 C 0.16 2.41 2.92 -66.27 -0.19 2.21 16 8 H 0.08 1.31 6.35 -51.93 -0.33 0.98 16 9 N -0.75 -13.25 5.30 -50.43 -0.27 -13.51 16 10 C 0.09 2.08 6.67 -83.69 -0.56 1.52 16 11 C -0.16 -3.90 9.15 -39.77 -0.36 -4.26 16 12 C -0.12 -3.29 8.63 -39.27 -0.34 -3.63 16 13 C 0.07 2.02 5.57 -106.79 -0.59 1.43 16 14 C -0.47 -12.89 9.03 -37.87 -0.34 -13.23 16 15 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 16 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 17 N -0.81 -21.73 10.98 55.54 0.61 -21.12 16 18 Si 0.90 19.44 29.60 -169.99 -5.03 14.41 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 22 C -0.19 -4.71 9.74 -39.26 -0.38 -5.09 16 23 C -0.16 -3.67 9.82 -39.77 -0.39 -4.06 16 24 C -0.13 -1.53 6.19 -25.61 -0.16 -1.69 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 7.48 -51.93 -0.39 0.07 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.62 8.02 -51.93 -0.42 0.21 16 30 H 0.07 0.72 7.77 -51.93 -0.40 0.32 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.38 6.04 8.37 -40.82 -0.34 5.70 16 35 H 0.09 1.93 6.16 -52.49 -0.32 1.60 16 36 H 0.12 3.22 6.18 -52.49 -0.32 2.90 16 37 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 38 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 39 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.06 0.74 7.73 -51.93 -0.40 0.34 16 41 H 0.07 0.80 7.67 -51.93 -0.40 0.40 16 LS Contribution 324.91 15.07 4.90 4.90 Total: -1.00 -27.95 324.91 -10.22 -38.17 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.68 Total: 8.92 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: -3.75 Total: -31.77 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.34 Total: -34.63 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.95 -10.22 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080453209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.693 kcal (2) G-P(sol) polarization free energy of solvation -27.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds