Wall clock time and date at job start Mon Mar 30 2020 07:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47344 * 2 1 4 4 H 1.08998 * 110.02000 * 54.29968 * 3 2 1 5 5 C 1.54272 * 110.03291 * 292.91068 * 3 2 1 6 6 C 1.54966 * 104.15658 * 217.13422 * 5 3 2 7 7 C 1.54893 * 102.77864 * 37.88893 * 6 5 3 8 8 H 1.09004 * 110.48547 * 80.75994 * 7 6 5 9 9 N 1.46499 * 110.48477 * 203.40032 * 7 6 5 10 10 C 1.38849 * 120.00188 * 269.77207 * 9 7 6 11 11 C 1.39573 * 119.84255 * 359.73149 * 10 9 7 12 12 C 1.36341 * 120.15756 * 179.71402 * 11 10 9 13 13 C 1.40881 * 119.83967 * 0.55703 * 12 11 10 14 14 C 1.41139 * 120.15775 * 179.69959 * 13 12 11 15 15 H 1.07995 * 120.00064 * 155.11104 * 14 13 12 16 16 C 1.39860 * 119.99549 * 335.10417 * 14 13 12 17 17 N 1.30902 * 120.00642 * 342.13206 * 16 14 13 18 18 Si 1.86807 * 119.99801 * 162.13160 * 16 14 13 19 19 H 1.48495 * 109.47000 * 94.65183 * 18 16 14 20 20 H 1.48492 * 109.47130 * 214.65470 * 18 16 14 21 21 H 1.48500 * 109.47066 * 334.65440 * 18 16 14 22 22 C 1.40888 * 119.68776 * 359.71204 * 13 12 11 23 23 C 1.36339 * 119.83885 * 0.02562 * 22 13 12 24 24 C 1.53870 * 110.03186 * 175.69164 * 3 2 1 25 25 H 1.09006 * 109.46740 * 299.99885 * 1 2 3 26 26 H 1.09001 * 109.46816 * 59.99801 * 1 2 3 27 27 H 1.08995 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46816 * 120.00199 * 2 1 3 29 29 H 1.09006 * 109.46740 * 240.00115 * 2 1 3 30 30 H 1.08996 * 110.48513 * 335.78433 * 5 3 2 31 31 H 1.09000 * 110.48510 * 98.42441 * 5 3 2 32 32 H 1.08997 * 110.72153 * 279.57338 * 6 5 3 33 33 H 1.09004 * 110.75931 * 156.22155 * 6 5 3 34 34 H 0.96997 * 119.99446 * 89.77795 * 9 7 6 35 35 H 1.07995 * 119.91773 * 359.97438 * 11 10 9 36 36 H 1.08002 * 120.07779 * 180.27160 * 12 11 10 37 37 H 0.96993 * 120.00456 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.08274 * 180.02562 * 22 13 12 39 39 H 1.07997 * 119.91937 * 179.97438 * 23 22 13 40 40 H 1.09001 * 110.03129 * 238.57048 * 24 3 2 41 41 H 1.08992 * 110.03451 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6010 1.9934 0.8317 5 6 1.6843 2.1288 -1.3350 6 6 2.9104 3.0266 -1.6382 7 6 4.0994 2.1541 -1.1647 8 1 4.3569 1.4157 -1.9240 9 7 5.2581 2.9936 -0.8502 10 6 6.1898 3.2887 -1.8365 11 6 6.0222 2.7791 -3.1251 12 6 6.9300 3.0695 -4.1000 13 6 8.0455 3.8764 -3.8011 14 6 8.9928 4.1761 -4.8036 15 1 9.5956 5.0689 -4.7274 16 6 9.1508 3.3166 -5.8956 17 7 8.7009 2.0890 -5.8330 18 14 10.0039 3.9207 -7.4438 19 1 11.4423 3.5553 -7.3910 20 1 9.3764 3.2904 -8.6328 21 1 9.8714 5.3968 -7.5382 22 6 8.2112 4.3826 -2.4968 23 6 7.2926 4.0885 -1.5332 24 6 3.5749 1.4588 0.1086 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 1.5513 1.3864 -2.1220 31 1 0.7848 2.7345 -1.2247 32 1 2.8601 3.9537 -1.0672 33 1 2.9837 3.2328 -2.7060 34 1 5.3744 3.3432 0.0470 35 1 5.1691 2.1568 -3.3514 36 1 6.7967 2.6782 -5.0977 37 1 8.8101 1.4931 -6.5904 38 1 9.0638 5.0022 -2.2608 39 1 7.4186 4.4755 -0.5329 40 1 3.8807 2.0184 0.9926 41 1 3.9563 0.4392 0.1618 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080453209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:15 Heat of formation + Delta-G solvation = -17.650574 kcal Electronic energy + Delta-G solvation = -18840.293474 eV Core-core repulsion = 16103.736511 eV Total energy + Delta-G solvation = -2736.556963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -40.30750 -39.08984 -36.33979 -34.79581 -32.97350 -31.35498 -30.50406 -29.44036 -27.67692 -25.79949 -23.67127 -23.01852 -22.26525 -21.04787 -20.35958 -19.15149 -17.97645 -17.04249 -16.70385 -15.98281 -15.69929 -15.45994 -14.92583 -14.52914 -14.44139 -14.10654 -14.09597 -13.80811 -13.57174 -13.34081 -13.01503 -12.76762 -12.72574 -12.40994 -12.25746 -12.10492 -12.04426 -11.72496 -11.58255 -11.51246 -11.26996 -11.25440 -11.11921 -10.98091 -10.24716 -9.39898 -8.54267 -8.13127 -5.99821 1.11304 1.19048 1.39942 1.52734 1.59539 2.27714 2.84695 2.92478 3.67529 3.75205 3.87572 3.91301 4.27854 4.38899 4.42948 4.50764 4.55074 4.56904 4.65896 4.71257 4.76617 4.90624 4.96358 5.03057 5.04380 5.15365 5.16263 5.23569 5.25657 5.30794 5.36430 5.38827 5.46585 5.48223 5.62162 5.71862 5.83073 5.97582 6.19624 6.40521 6.69138 6.89864 7.09099 7.17332 7.35273 8.49062 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035853 B = 0.003888 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.788884 B = 7199.490550 C = 7642.181123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.082 4.082 4 H 0.082 0.918 5 C -0.111 4.111 6 C -0.138 4.138 7 C 0.151 3.849 8 H 0.058 0.942 9 N -0.743 5.743 10 C 0.115 3.885 11 C -0.175 4.175 12 C -0.143 4.143 13 C 0.034 3.966 14 C -0.507 4.507 15 H 0.067 0.933 16 C 0.031 3.969 17 N -0.843 5.843 18 Si 0.976 3.024 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.261 1.261 22 C -0.196 4.196 23 C -0.167 4.167 24 C -0.120 4.120 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.396 0.604 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.282 0.718 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.045 -3.014 9.687 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.101 4.101 4 H 0.100 0.900 5 C -0.149 4.149 6 C -0.177 4.177 7 C 0.045 3.955 8 H 0.076 0.924 9 N -0.377 5.377 10 C 0.015 3.985 11 C -0.197 4.197 12 C -0.163 4.163 13 C 0.032 3.968 14 C -0.538 4.538 15 H 0.085 0.915 16 C -0.180 4.180 17 N -0.471 5.471 18 Si 0.798 3.202 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.185 1.185 22 C -0.216 4.216 23 C -0.190 4.190 24 C -0.158 4.158 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.230 0.770 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.164 -3.350 9.471 17.365 hybrid contribution 0.798 0.277 -0.656 1.070 sum -13.366 -3.073 8.814 16.303 Atomic orbital electron populations 1.21777 0.95140 1.01832 1.02070 1.21651 0.96499 0.95449 1.01889 1.21713 0.93767 0.96650 0.97993 0.89975 1.22386 0.97117 0.98234 0.97163 1.22958 0.95555 0.98962 1.00237 1.21631 0.84969 0.91701 0.97231 0.92417 1.44025 1.24716 1.58461 1.10500 1.17470 0.92046 0.99575 0.89382 1.20251 1.01126 1.05156 0.93153 1.20852 0.94603 1.02558 0.98300 1.17809 0.92853 0.93731 0.92457 1.19584 1.19993 1.08115 1.06118 0.91456 1.26616 0.95304 0.93759 1.02354 1.69921 1.39767 1.05499 1.31902 0.85292 0.78556 0.79487 0.76891 1.18997 1.19280 1.18541 1.20763 1.00474 1.07085 0.93279 1.20107 0.96112 1.03820 0.98925 1.22425 0.95919 1.00654 0.96777 0.92280 0.92688 0.92474 0.91602 0.92598 0.91636 0.90559 0.91530 0.93541 0.76957 0.87991 0.88491 0.90803 0.88537 0.86456 0.90724 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.76 71.98 0.70 -1.33 16 2 C -0.12 -1.86 5.06 30.59 0.15 -1.70 16 3 C -0.08 -1.45 2.93 -10.07 -0.03 -1.48 16 4 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.11 -2.20 5.50 31.70 0.17 -2.02 16 6 C -0.14 -3.61 6.58 31.91 0.21 -3.40 16 7 C 0.15 4.31 2.92 46.07 0.13 4.45 16 8 H 0.06 1.91 6.35 -2.39 -0.02 1.89 16 9 N -0.74 -24.70 5.30 -313.46 -1.66 -26.37 16 10 C 0.11 4.97 6.67 38.67 0.26 5.22 16 11 C -0.17 -8.42 9.15 22.15 0.20 -8.22 16 12 C -0.14 -7.91 8.63 22.47 0.19 -7.72 16 13 C 0.03 1.95 5.57 -21.27 -0.12 1.84 16 14 C -0.51 -29.05 9.03 23.38 0.21 -28.83 16 15 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 16 C 0.03 1.68 5.13 85.22 0.44 2.12 16 17 N -0.84 -46.85 10.98 21.81 0.24 -46.61 16 18 Si 0.98 40.75 29.60 68.60 2.03 42.78 16 19 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 C -0.20 -10.01 9.74 22.48 0.22 -9.79 16 23 C -0.17 -7.47 9.82 22.15 0.22 -7.26 16 24 C -0.12 -2.56 6.19 31.32 0.19 -2.36 16 25 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.05 0.75 7.48 -2.39 -0.02 0.73 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.98 8.02 -2.38 -0.02 0.96 16 30 H 0.06 1.31 7.77 -2.39 -0.02 1.30 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.40 11.32 8.37 -92.71 -0.78 10.54 16 35 H 0.10 4.52 6.16 -2.91 -0.02 4.51 16 36 H 0.10 5.65 6.18 -2.91 -0.02 5.63 16 37 H 0.28 14.24 8.30 -92.71 -0.77 13.47 16 38 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.07 1.47 7.73 -2.39 -0.02 1.45 16 41 H 0.07 1.46 7.67 -2.39 -0.02 1.44 16 Total: -1.00 -61.89 324.91 4.00 -57.89 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.23 Total: 32.78 kcal Atomic # 6 Polarization: -63.65 SS G_CDS: 3.16 Total: -60.49 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -1.42 Total: -72.97 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -61.89 4.00 -57.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080453209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.243 kcal (2) G-P(sol) polarization free energy of solvation -61.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds