Wall clock time and date at job start Mon Mar 30 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47682 * 2 1 4 4 C 1.50700 * 109.46877 * 120.00353 * 2 1 3 5 5 C 1.38306 * 119.91676 * 299.99550 * 4 2 1 6 6 C 1.38024 * 119.91010 * 179.89545 * 5 4 2 7 7 C 1.39075 * 120.03065 * 0.03604 * 6 5 4 8 8 C 1.38611 * 120.02611 * 0.16378 * 7 6 5 9 9 C 1.38121 * 119.92128 * 119.97179 * 4 2 1 10 10 C 1.50592 * 121.50065 * 179.45266 * 8 7 6 11 11 H 1.09000 * 109.29762 * 260.51408 * 10 8 7 12 12 C 1.52998 * 109.29908 * 140.93023 * 10 8 7 13 13 C 1.50709 * 109.46790 * 174.99992 * 12 10 8 14 14 H 1.07994 * 120.00320 * 359.97438 * 13 12 10 15 15 C 1.37881 * 119.99599 * 179.97438 * 13 12 10 16 16 N 1.31509 * 120.00237 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99631 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47227 * 60.00215 * 17 15 13 19 19 H 1.48496 * 109.47042 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47129 * 299.99885 * 17 15 13 21 21 C 1.52858 * 110.48814 * 20.82126 * 10 8 7 22 22 C 1.53421 * 108.86585 * 308.66879 * 21 10 8 23 23 N 1.39915 * 119.13848 * 180.43002 * 7 6 5 24 24 H 1.09005 * 109.46826 * 59.99683 * 1 2 3 25 25 H 1.08993 * 109.47302 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46914 * 300.00300 * 1 2 3 27 27 H 1.09003 * 109.46738 * 240.00017 * 2 1 3 28 28 H 1.08994 * 109.47430 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47380 * 300.00293 * 3 2 1 30 30 H 1.09004 * 109.46563 * 59.99914 * 3 2 1 31 31 H 1.08002 * 120.04715 * 359.88130 * 5 4 2 32 32 H 1.07997 * 119.98604 * 180.02562 * 6 5 4 33 33 H 1.08010 * 119.84782 * 0.02562 * 9 4 2 34 34 H 1.08999 * 109.47209 * 294.99510 * 12 10 8 35 35 H 1.08996 * 109.47398 * 55.00089 * 12 10 8 36 36 H 0.97000 * 120.00389 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.57341 * 68.48940 * 21 10 8 38 38 H 1.09008 * 109.56801 * 188.85160 * 21 10 8 39 39 H 1.08996 * 109.79059 * 182.71812 * 22 21 10 40 40 H 1.08996 * 109.79627 * 303.56229 * 22 21 10 41 41 H 0.97005 * 120.54236 * 13.50529 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6972 -0.2365 2.4858 6 6 2.1555 -0.8886 3.6126 7 6 2.9538 -2.0203 3.4856 8 6 3.2927 -2.4923 2.2271 9 6 2.8258 -1.8337 1.1018 10 6 4.1649 -3.7072 2.0510 11 1 5.1862 -3.3900 1.8405 12 6 3.6420 -4.5394 0.8785 13 6 4.5812 -5.6895 0.6205 14 1 5.4630 -5.8141 1.2314 15 6 4.3146 -6.5827 -0.3955 16 7 3.2411 -6.4307 -1.1398 17 14 5.4790 -8.0077 -0.7157 18 1 5.5642 -8.8596 0.4976 19 1 4.9715 -8.8155 -1.8537 20 1 6.8274 -7.4805 -1.0461 21 6 4.1526 -4.5628 3.3176 22 6 4.4732 -3.6694 4.5230 23 7 3.4006 -2.6720 4.6402 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6769 1.9563 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 1.0779 0.6428 2.5842 32 1 1.8942 -0.5198 4.5935 33 1 3.0844 -2.1995 0.1190 34 1 2.6520 -4.9261 1.1203 35 1 3.5803 -3.9140 -0.0120 36 1 3.0533 -7.0592 -1.8543 37 1 3.1671 -5.0102 3.4465 38 1 4.9041 -5.3482 3.2350 39 1 4.5158 -4.2735 5.4292 40 1 5.4285 -3.1683 4.3673 41 1 3.0092 -2.4681 5.5041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084018751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:18 Heat of formation + Delta-G solvation = -3.944636 kcal Electronic energy + Delta-G solvation = -19466.952111 eV Core-core repulsion = 16730.989482 eV Total energy + Delta-G solvation = -2735.962629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.77682 -37.03674 -34.43991 -33.86315 -32.15835 -29.53079 -29.01310 -27.28345 -26.93765 -24.16529 -23.17401 -22.39086 -20.91052 -20.19214 -18.15627 -17.01983 -16.36420 -15.93784 -15.08514 -14.51140 -14.16344 -13.76393 -13.45032 -13.36543 -13.15923 -12.97970 -12.71579 -12.39263 -12.29371 -12.05964 -11.91451 -11.52200 -11.10487 -11.02741 -10.87127 -10.83948 -10.63276 -10.45342 -10.34388 -9.96974 -9.81832 -9.43654 -9.07805 -8.96865 -8.31645 -8.06135 -6.81733 -5.96980 -3.98970 1.99473 2.10452 3.33873 3.38852 3.40595 3.88902 4.35145 4.47769 5.05841 5.11292 5.33803 5.37811 5.44331 5.46402 5.52377 5.65799 5.72759 5.77947 5.83049 5.92395 5.96850 5.98821 6.12352 6.12766 6.16294 6.31337 6.41618 6.45133 6.47102 6.65878 6.78068 6.84787 6.96324 7.05578 7.15678 7.31940 7.41458 7.71424 7.79412 7.88690 8.03376 8.17982 8.44913 9.06910 9.64264 11.14061 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.006210 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.588844 B = 4507.628334 C = 5754.207060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 C -0.140 4.140 4 C -0.134 4.134 5 C -0.086 4.086 6 C -0.198 4.198 7 C 0.204 3.796 8 C -0.124 4.124 9 C -0.068 4.068 10 C -0.040 4.040 11 H 0.064 0.936 12 C 0.034 3.966 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.119 4.119 22 C 0.121 3.879 23 N -0.756 5.756 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.016 0.984 35 H 0.021 0.979 36 H 0.260 0.740 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 12.019 7.955 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.135 4.135 5 C -0.104 4.104 6 C -0.221 4.221 7 C 0.103 3.897 8 C -0.128 4.128 9 C -0.087 4.087 10 C -0.058 4.058 11 H 0.083 0.917 12 C -0.003 4.003 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.157 4.157 22 C -0.004 4.004 23 N -0.388 5.388 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.035 0.965 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.305 11.798 7.760 14.308 hybrid contribution 0.398 -0.833 0.146 0.935 sum -1.908 10.965 7.906 13.652 Atomic orbital electron populations 1.21840 0.95096 1.01954 1.00979 1.19980 0.95352 0.95420 0.96106 1.21838 1.01136 0.95741 1.01056 1.19488 1.02102 0.97910 0.94033 1.20485 0.99325 0.98939 0.91699 1.20488 1.05716 0.97583 0.98278 1.17619 0.94181 0.90983 0.86942 1.19726 1.03348 0.98839 0.90859 1.21049 0.95423 0.93429 0.98751 1.20044 0.97080 0.91480 0.97232 0.91744 1.19184 0.96272 0.93658 0.91180 1.21219 1.08514 1.10377 1.15492 0.92690 1.25002 0.95296 0.97905 0.96144 1.69953 1.25968 1.37151 1.20268 0.86712 0.81293 0.82581 0.77723 1.20325 1.21372 1.20301 1.21829 1.02663 0.97726 0.93512 1.21623 0.89621 0.89954 0.99164 1.44616 1.42240 1.45416 1.06517 0.93068 0.92444 0.92953 0.90690 0.92714 0.93059 0.92925 0.87189 0.87264 0.85507 0.96524 0.96099 0.93008 0.91852 0.90234 0.91321 0.93083 0.77333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.01 37.16 0.33 -1.42 16 2 C -0.05 -0.69 3.09 -91.77 -0.28 -0.98 16 3 C -0.14 -1.65 9.01 37.16 0.33 -1.31 16 4 C -0.13 -2.16 4.78 -104.64 -0.50 -2.66 16 5 C -0.09 -1.28 8.70 -39.64 -0.34 -1.63 16 6 C -0.20 -3.04 9.88 -39.35 -0.39 -3.43 16 7 C 0.20 3.51 6.48 -83.72 -0.54 2.97 16 8 C -0.12 -2.41 5.47 -104.44 -0.57 -2.98 16 9 C -0.07 -1.29 8.72 -39.53 -0.34 -1.64 16 10 C -0.04 -0.84 2.29 -91.90 -0.21 -1.05 16 11 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 12 C 0.03 0.87 4.06 -27.88 -0.11 0.75 16 13 C -0.52 -14.27 8.49 -34.43 -0.29 -14.56 16 14 H 0.05 1.46 7.00 -52.49 -0.37 1.09 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 17 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.12 -2.23 5.03 -26.59 -0.13 -2.36 16 22 C 0.12 1.79 7.11 -3.59 -0.03 1.76 16 23 N -0.76 -11.21 5.80 -58.09 -0.34 -11.54 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 27 H 0.07 1.09 7.87 -51.93 -0.41 0.68 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.57 7.38 -51.93 -0.38 0.19 16 31 H 0.11 1.39 7.10 -52.49 -0.37 1.02 16 32 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.13 2.56 6.12 -52.48 -0.32 2.24 16 34 H 0.02 0.46 8.13 -51.93 -0.42 0.04 16 35 H 0.02 0.56 6.21 -51.93 -0.32 0.24 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 38 H 0.08 1.51 7.15 -51.92 -0.37 1.14 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.39 4.73 8.86 -40.82 -0.36 4.37 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -29.90 322.18 -9.60 -39.50 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.65 Total: 3.72 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -3.18 Total: -27.00 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.40 Total: -37.53 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.90 -9.60 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084018751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.551 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds