Wall clock time and date at job start Mon Mar 30 2020 07:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47682 * 2 1 4 4 C 1.50700 * 109.46877 * 120.00353 * 2 1 3 5 5 C 1.38306 * 119.91676 * 299.99550 * 4 2 1 6 6 C 1.38024 * 119.91010 * 179.89545 * 5 4 2 7 7 C 1.39075 * 120.03065 * 0.03604 * 6 5 4 8 8 C 1.38611 * 120.02611 * 0.16378 * 7 6 5 9 9 C 1.38121 * 119.92128 * 119.97179 * 4 2 1 10 10 C 1.50592 * 121.50065 * 179.45266 * 8 7 6 11 11 H 1.09000 * 109.29762 * 260.51408 * 10 8 7 12 12 C 1.52998 * 109.29908 * 140.93023 * 10 8 7 13 13 C 1.50709 * 109.46790 * 174.99992 * 12 10 8 14 14 H 1.07994 * 120.00320 * 359.97438 * 13 12 10 15 15 C 1.37881 * 119.99599 * 179.97438 * 13 12 10 16 16 N 1.31509 * 120.00237 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99631 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47227 * 60.00215 * 17 15 13 19 19 H 1.48496 * 109.47042 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47129 * 299.99885 * 17 15 13 21 21 C 1.52858 * 110.48814 * 20.82126 * 10 8 7 22 22 C 1.53421 * 108.86585 * 308.66879 * 21 10 8 23 23 N 1.39915 * 119.13848 * 180.43002 * 7 6 5 24 24 H 1.09005 * 109.46826 * 59.99683 * 1 2 3 25 25 H 1.08993 * 109.47302 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46914 * 300.00300 * 1 2 3 27 27 H 1.09003 * 109.46738 * 240.00017 * 2 1 3 28 28 H 1.08994 * 109.47430 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47380 * 300.00293 * 3 2 1 30 30 H 1.09004 * 109.46563 * 59.99914 * 3 2 1 31 31 H 1.08002 * 120.04715 * 359.88130 * 5 4 2 32 32 H 1.07997 * 119.98604 * 180.02562 * 6 5 4 33 33 H 1.08010 * 119.84782 * 0.02562 * 9 4 2 34 34 H 1.08999 * 109.47209 * 294.99510 * 12 10 8 35 35 H 1.08996 * 109.47398 * 55.00089 * 12 10 8 36 36 H 0.97000 * 120.00389 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.57341 * 68.48940 * 21 10 8 38 38 H 1.09008 * 109.56801 * 188.85160 * 21 10 8 39 39 H 1.08996 * 109.79059 * 182.71812 * 22 21 10 40 40 H 1.08996 * 109.79627 * 303.56229 * 22 21 10 41 41 H 0.97005 * 120.54236 * 13.50529 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6972 -0.2365 2.4858 6 6 2.1555 -0.8886 3.6126 7 6 2.9538 -2.0203 3.4856 8 6 3.2927 -2.4923 2.2271 9 6 2.8258 -1.8337 1.1018 10 6 4.1649 -3.7072 2.0510 11 1 5.1862 -3.3900 1.8405 12 6 3.6420 -4.5394 0.8785 13 6 4.5812 -5.6895 0.6205 14 1 5.4630 -5.8141 1.2314 15 6 4.3146 -6.5827 -0.3955 16 7 3.2411 -6.4307 -1.1398 17 14 5.4790 -8.0077 -0.7157 18 1 5.5642 -8.8596 0.4976 19 1 4.9715 -8.8155 -1.8537 20 1 6.8274 -7.4805 -1.0461 21 6 4.1526 -4.5628 3.3176 22 6 4.4732 -3.6694 4.5230 23 7 3.4006 -2.6720 4.6402 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6769 1.9563 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 1.0779 0.6428 2.5842 32 1 1.8942 -0.5198 4.5935 33 1 3.0844 -2.1995 0.1190 34 1 2.6520 -4.9261 1.1203 35 1 3.5803 -3.9140 -0.0120 36 1 3.0533 -7.0592 -1.8543 37 1 3.1671 -5.0102 3.4465 38 1 4.9041 -5.3482 3.2350 39 1 4.5158 -4.2735 5.4292 40 1 5.4285 -3.1683 4.3673 41 1 3.0092 -2.4681 5.5041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084018751.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:13 Heat of formation + Delta-G solvation = -20.079498 kcal Electronic energy + Delta-G solvation = -19467.651771 eV Core-core repulsion = 16730.989482 eV Total energy + Delta-G solvation = -2736.662289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -41.13086 -38.31804 -36.12393 -35.08635 -34.13172 -30.90039 -30.46550 -29.00219 -27.90154 -25.98891 -24.46419 -23.88411 -22.32512 -21.67364 -19.58078 -18.59666 -18.14783 -17.23975 -16.54870 -16.39331 -15.31399 -15.15421 -14.89943 -14.67373 -14.50641 -14.31985 -14.21050 -14.00155 -13.58899 -13.40631 -13.13364 -12.97159 -12.81791 -12.73855 -12.44401 -12.30277 -12.07992 -11.97883 -11.61842 -11.51310 -11.44624 -10.98713 -10.93536 -10.57629 -10.48888 -9.47120 -8.17999 -8.07663 -6.28169 0.64356 0.79255 1.39094 1.42384 1.49957 2.41255 2.71326 3.02127 3.15088 3.85945 3.99115 4.07030 4.16867 4.21429 4.28907 4.42673 4.47670 4.59524 4.62150 4.72402 4.76676 4.83411 4.87790 4.90491 5.03799 5.04670 5.18947 5.20187 5.27815 5.34245 5.36602 5.39447 5.47923 5.50830 5.57314 5.68056 5.83739 5.84477 6.00337 6.09701 6.27327 6.52449 6.87293 7.10266 7.40154 8.94268 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.006210 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.588844 B = 4507.628334 C = 5754.207060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 C -0.134 4.134 4 C -0.135 4.135 5 C -0.078 4.078 6 C -0.190 4.190 7 C 0.197 3.803 8 C -0.157 4.157 9 C -0.095 4.095 10 C -0.033 4.033 11 H 0.053 0.947 12 C 0.046 3.954 13 C -0.533 4.533 14 H 0.064 0.936 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.963 3.037 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.267 1.267 21 C -0.116 4.116 22 C 0.130 3.870 23 N -0.748 5.748 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.093 0.907 34 H -0.021 1.021 35 H -0.009 1.009 36 H 0.262 0.738 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.057 0.943 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 13.450 10.320 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.073 4.073 3 C -0.191 4.191 4 C -0.137 4.137 5 C -0.097 4.097 6 C -0.212 4.212 7 C 0.094 3.906 8 C -0.161 4.161 9 C -0.114 4.114 10 C -0.051 4.051 11 H 0.071 0.929 12 C 0.010 3.990 13 C -0.570 4.570 14 H 0.082 0.918 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.788 3.212 18 H -0.189 1.189 19 H -0.211 1.211 20 H -0.192 1.192 21 C -0.154 4.154 22 C 0.005 3.995 23 N -0.381 5.381 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.111 0.889 34 H -0.003 1.003 35 H 0.009 0.991 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.075 0.925 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.208 13.238 10.160 16.832 hybrid contribution 0.311 -1.227 -0.629 1.414 sum -1.897 12.010 9.530 15.449 Atomic orbital electron populations 1.21809 0.93663 1.01160 1.02784 1.20042 0.96505 0.96533 0.94215 1.21785 1.00512 0.94067 1.02731 1.19738 1.01108 0.96881 0.96005 1.20873 0.98603 0.99510 0.90675 1.20896 1.04012 0.96266 1.00063 1.17726 0.94466 0.91815 0.86557 1.19645 1.04993 0.98977 0.92518 1.20957 0.97670 0.95391 0.97377 1.19822 0.96567 0.92198 0.96516 0.92863 1.18966 0.94320 0.93544 0.92213 1.21632 1.08920 1.10872 1.15624 0.91775 1.25983 0.97040 1.01038 0.95841 1.70116 1.28071 1.38430 1.20955 0.85531 0.79013 0.78793 0.77902 1.18943 1.21124 1.19194 1.21737 1.01332 0.97939 0.94382 1.21583 0.89745 0.89621 0.98511 1.44565 1.42067 1.44846 1.06602 0.91236 0.94532 0.91156 0.92899 0.93697 0.91334 0.91264 0.83689 0.83650 0.88880 1.00307 0.99098 0.92962 0.93835 0.90922 0.87571 0.92491 0.75214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.01 71.98 0.65 -2.59 16 2 C -0.05 -1.50 3.09 -11.54 -0.04 -1.54 16 3 C -0.13 -2.89 9.01 71.98 0.65 -2.24 16 4 C -0.14 -4.41 4.78 -19.88 -0.10 -4.51 16 5 C -0.08 -2.13 8.70 22.23 0.19 -1.94 16 6 C -0.19 -5.24 9.88 22.42 0.22 -5.02 16 7 C 0.20 6.53 6.48 38.14 0.25 6.78 16 8 C -0.16 -6.39 5.47 -19.75 -0.11 -6.50 16 9 C -0.10 -3.89 8.72 22.30 0.19 -3.69 16 10 C -0.03 -1.46 2.29 -11.62 -0.03 -1.48 16 11 H 0.05 2.42 8.14 -2.39 -0.02 2.41 16 12 C 0.05 2.58 4.06 29.85 0.12 2.70 16 13 C -0.53 -30.73 8.49 25.60 0.22 -30.51 16 14 H 0.06 3.49 7.00 -2.91 -0.02 3.47 16 15 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 16 N -0.94 -58.60 13.29 21.45 0.28 -58.31 16 17 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 C -0.12 -4.40 5.03 30.69 0.15 -4.24 16 22 C 0.13 3.58 7.11 86.44 0.61 4.20 16 23 N -0.75 -20.30 5.80 -337.69 -1.96 -22.25 16 24 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.40 7.39 -2.39 -0.02 1.38 16 27 H 0.05 1.65 7.87 -2.39 -0.02 1.63 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.27 7.38 -2.39 -0.02 1.25 16 31 H 0.15 2.96 7.10 -2.91 -0.02 2.94 16 32 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.09 4.29 6.12 -2.91 -0.02 4.27 16 34 H -0.02 -1.33 8.13 -2.39 -0.02 -1.35 16 35 H -0.01 -0.56 6.21 -2.39 -0.01 -0.57 16 36 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.04 1.80 8.12 -2.39 -0.02 1.78 16 38 H 0.07 2.80 7.15 -2.38 -0.02 2.79 16 39 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.41 8.32 8.86 -92.70 -0.82 7.49 16 Total: -1.00 -69.10 322.18 4.00 -65.11 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.19 Total: 18.72 kcal Atomic # 6 Polarization: -53.68 SS G_CDS: 3.46 Total: -50.22 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -1.67 Total: -80.56 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -69.10 4.00 -65.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084018751.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.030 kcal (2) G-P(sol) polarization free energy of solvation -69.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds