Wall clock time and date at job start Mon Mar 30 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47284 * 2 1 4 4 C 1.50702 * 109.47280 * 119.99892 * 2 1 3 5 5 C 1.38316 * 119.91874 * 300.00220 * 4 2 1 6 6 C 1.38018 * 119.91267 * 180.02562 * 5 4 2 7 7 C 1.39078 * 120.02880 * 359.97438 * 6 5 4 8 8 C 1.38600 * 120.02733 * 359.81718 * 7 6 5 9 9 C 1.38123 * 119.92351 * 119.97440 * 4 2 1 10 10 C 1.50592 * 121.50379 * 180.52432 * 8 7 6 11 11 H 1.08997 * 109.30276 * 99.41189 * 10 8 7 12 12 C 1.53001 * 109.29921 * 218.99293 * 10 8 7 13 13 C 1.50706 * 109.46913 * 184.99736 * 12 10 8 14 14 H 1.07999 * 120.00229 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99847 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00132 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99907 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47038 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46900 * 120.00556 * 17 15 13 20 20 H 1.48496 * 109.47025 * 240.00377 * 17 15 13 21 21 C 1.52859 * 110.48680 * 339.30529 * 10 8 7 22 22 C 1.53017 * 108.97178 * 51.21220 * 21 10 8 23 23 N 1.39925 * 119.13051 * 179.80460 * 7 6 5 24 24 H 1.09005 * 109.47410 * 299.99974 * 1 2 3 25 25 H 1.09000 * 109.47417 * 60.00343 * 1 2 3 26 26 H 1.09005 * 109.47018 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46948 * 239.99788 * 2 1 3 28 28 H 1.08994 * 109.47419 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46614 * 300.00149 * 3 2 1 30 30 H 1.09006 * 109.47182 * 59.99257 * 3 2 1 31 31 H 1.08005 * 120.03974 * 0.05313 * 5 4 2 32 32 H 1.07998 * 119.98653 * 180.02562 * 6 5 4 33 33 H 1.07999 * 119.84073 * 0.05700 * 9 4 2 34 34 H 1.08992 * 109.47665 * 305.00142 * 12 10 8 35 35 H 1.09002 * 109.47348 * 65.00297 * 12 10 8 36 36 H 0.96996 * 120.00167 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.57503 * 171.14772 * 21 10 8 38 38 H 1.09003 * 109.57119 * 291.40176 * 21 10 8 39 39 H 1.08994 * 109.75748 * 177.40488 * 22 21 10 40 40 H 1.09004 * 109.60815 * 56.69027 * 22 21 10 41 41 H 0.97001 * 120.53985 * 346.45109 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6972 -0.2364 2.4859 6 6 2.1578 -0.8868 3.6127 7 6 2.9574 -2.0176 3.4857 8 6 3.2893 -2.4945 2.2274 9 6 2.8259 -1.8336 1.1019 10 6 4.1431 -3.7224 2.0512 11 1 3.5030 -4.5794 1.8418 12 6 5.1011 -3.5081 0.8776 13 6 5.8714 -4.7775 0.6198 14 1 5.6950 -5.6500 1.2314 15 6 6.8006 -4.8254 -0.3978 16 7 7.0150 -3.7632 -1.1430 17 14 7.7548 -6.3991 -0.7179 18 1 7.3307 -7.4410 0.2514 19 1 7.4840 -6.8697 -2.1000 20 1 9.2080 -6.1376 -0.5599 21 6 4.9511 -3.9986 3.3191 22 6 4.0047 -4.0013 4.5214 23 7 3.4174 -2.6598 4.6406 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9562 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.0754 0.6413 2.5842 32 1 1.8964 -0.5179 4.5936 33 1 3.0849 -2.1990 0.1192 34 1 4.5314 -3.2416 -0.0125 35 1 5.7964 -2.7039 1.1183 36 1 7.6690 -3.7968 -1.8586 37 1 5.4403 -4.9691 3.2362 38 1 5.7033 -3.2205 3.4494 39 1 4.5606 -4.2427 5.4274 40 1 3.2158 -4.7369 4.3644 41 1 3.3534 -2.2248 5.5052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084018753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:20 Heat of formation + Delta-G solvation = -4.102357 kcal Electronic energy + Delta-G solvation = -19467.443809 eV Core-core repulsion = 16731.474341 eV Total energy + Delta-G solvation = -2735.969468 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.78145 -37.04471 -34.44147 -33.86956 -32.16089 -29.54191 -29.01917 -27.29303 -26.93725 -24.17286 -23.17291 -22.39447 -20.90733 -20.19391 -18.15416 -17.02220 -16.36948 -15.94239 -15.08974 -14.50701 -14.16407 -13.77295 -13.45063 -13.36501 -13.15964 -12.97908 -12.72252 -12.39049 -12.30029 -12.06115 -11.92453 -11.52929 -11.11676 -11.02849 -10.87288 -10.81726 -10.64928 -10.44199 -10.34435 -9.96048 -9.82118 -9.43661 -9.08832 -8.95043 -8.32430 -8.06185 -6.81773 -5.97499 -3.99306 1.99409 2.10435 3.31541 3.39424 3.42533 3.88666 4.35109 4.47561 5.05800 5.11264 5.33572 5.37654 5.44306 5.46373 5.52207 5.65860 5.72675 5.77925 5.83273 5.92777 5.96767 5.98780 6.12272 6.12694 6.16266 6.31326 6.41378 6.45122 6.47058 6.65874 6.77969 6.84622 6.96166 7.05297 7.15602 7.31885 7.41396 7.71678 7.79277 7.88513 8.03102 8.17850 8.44730 9.07040 9.64106 11.13607 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018152 B = 0.006212 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.130473 B = 4506.662861 C = 5754.336451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.086 4.086 6 C -0.198 4.198 7 C 0.204 3.796 8 C -0.124 4.124 9 C -0.068 4.068 10 C -0.040 4.040 11 H 0.064 0.936 12 C 0.033 3.967 13 C -0.516 4.516 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.120 4.120 22 C 0.121 3.879 23 N -0.756 5.756 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.021 0.979 35 H 0.016 0.984 36 H 0.259 0.741 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.554 6.236 7.989 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.199 4.199 4 C -0.135 4.135 5 C -0.104 4.104 6 C -0.221 4.221 7 C 0.103 3.897 8 C -0.128 4.128 9 C -0.086 4.086 10 C -0.058 4.058 11 H 0.082 0.918 12 C -0.004 4.004 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.716 3.284 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.158 4.158 22 C -0.003 4.003 23 N -0.388 5.388 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -10.372 6.101 7.803 14.342 hybrid contribution 0.667 -0.635 0.125 0.930 sum -9.704 5.466 7.928 13.671 Atomic orbital electron populations 1.21840 0.95223 1.01653 1.01055 1.19979 0.95109 0.95663 0.96105 1.21840 1.01485 0.95565 1.00979 1.19492 1.02198 0.97821 0.94032 1.20486 0.99451 0.98806 0.91698 1.20486 1.04219 0.99077 0.98279 1.17619 0.92922 0.92240 0.86942 1.19722 1.01706 1.00507 0.90862 1.21049 0.94973 0.93870 0.98751 1.20040 0.95663 0.92903 0.97195 0.91765 1.19193 0.93040 0.96956 0.91174 1.21293 1.20937 0.97911 1.15291 0.92579 1.25009 0.97154 0.96077 0.96166 1.69977 1.34688 1.28441 1.20225 0.86597 0.79854 0.83843 0.78076 1.19780 1.21093 1.21126 1.21756 0.97443 1.03033 0.93575 1.21535 0.95983 0.83642 0.99151 1.44616 1.69369 1.18372 1.06415 0.92924 0.93059 0.92715 0.90689 0.92445 0.93069 0.92952 0.87188 0.87260 0.85504 0.96072 0.96514 0.93128 0.90202 0.91888 0.91322 0.93107 0.77324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.01 37.16 0.33 -1.31 16 2 C -0.05 -0.69 3.09 -91.77 -0.28 -0.98 16 3 C -0.14 -1.76 9.01 37.16 0.33 -1.42 16 4 C -0.13 -2.16 4.78 -104.63 -0.50 -2.66 16 5 C -0.09 -1.28 8.70 -39.63 -0.34 -1.63 16 6 C -0.20 -3.03 9.88 -39.35 -0.39 -3.42 16 7 C 0.20 3.51 6.48 -83.72 -0.54 2.97 16 8 C -0.12 -2.42 5.47 -104.44 -0.57 -2.99 16 9 C -0.07 -1.29 8.72 -39.53 -0.34 -1.63 16 10 C -0.04 -0.84 2.29 -91.90 -0.21 -1.05 16 11 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 12 C 0.03 0.85 4.06 -27.88 -0.11 0.74 16 13 C -0.52 -14.22 8.49 -34.44 -0.29 -14.51 16 14 H 0.06 1.49 7.00 -52.49 -0.37 1.13 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 C -0.12 -2.24 5.02 -26.79 -0.13 -2.37 16 22 C 0.12 1.80 7.09 -3.80 -0.03 1.77 16 23 N -0.76 -11.20 5.80 -58.30 -0.34 -11.54 16 24 H 0.05 0.57 7.38 -51.93 -0.38 0.19 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.09 7.87 -51.93 -0.41 0.68 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 31 H 0.11 1.39 7.10 -52.48 -0.37 1.02 16 32 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.13 2.56 6.11 -52.49 -0.32 2.24 16 34 H 0.02 0.57 6.21 -51.93 -0.32 0.25 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.08 1.51 7.15 -51.93 -0.37 1.14 16 38 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.39 4.72 8.86 -40.82 -0.36 4.36 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -29.94 322.17 -9.60 -39.54 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.65 Total: 3.64 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -3.18 Total: -26.98 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.40 Total: -37.50 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.94 -9.60 -39.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084018753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.439 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds