Wall clock time and date at job start Mon Mar 30 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47284 * 2 1 4 4 C 1.50702 * 109.47280 * 119.99892 * 2 1 3 5 5 C 1.38316 * 119.91874 * 300.00220 * 4 2 1 6 6 C 1.38018 * 119.91267 * 180.02562 * 5 4 2 7 7 C 1.39078 * 120.02880 * 359.97438 * 6 5 4 8 8 C 1.38600 * 120.02733 * 359.81718 * 7 6 5 9 9 C 1.38123 * 119.92351 * 119.97440 * 4 2 1 10 10 C 1.50592 * 121.50379 * 180.52432 * 8 7 6 11 11 H 1.08997 * 109.30276 * 99.41189 * 10 8 7 12 12 C 1.53001 * 109.29921 * 218.99293 * 10 8 7 13 13 C 1.50706 * 109.46913 * 184.99736 * 12 10 8 14 14 H 1.07999 * 120.00229 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99847 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00132 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99907 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47038 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46900 * 120.00556 * 17 15 13 20 20 H 1.48496 * 109.47025 * 240.00377 * 17 15 13 21 21 C 1.52859 * 110.48680 * 339.30529 * 10 8 7 22 22 C 1.53017 * 108.97178 * 51.21220 * 21 10 8 23 23 N 1.39925 * 119.13051 * 179.80460 * 7 6 5 24 24 H 1.09005 * 109.47410 * 299.99974 * 1 2 3 25 25 H 1.09000 * 109.47417 * 60.00343 * 1 2 3 26 26 H 1.09005 * 109.47018 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46948 * 239.99788 * 2 1 3 28 28 H 1.08994 * 109.47419 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46614 * 300.00149 * 3 2 1 30 30 H 1.09006 * 109.47182 * 59.99257 * 3 2 1 31 31 H 1.08005 * 120.03974 * 0.05313 * 5 4 2 32 32 H 1.07998 * 119.98653 * 180.02562 * 6 5 4 33 33 H 1.07999 * 119.84073 * 0.05700 * 9 4 2 34 34 H 1.08992 * 109.47665 * 305.00142 * 12 10 8 35 35 H 1.09002 * 109.47348 * 65.00297 * 12 10 8 36 36 H 0.96996 * 120.00167 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.57503 * 171.14772 * 21 10 8 38 38 H 1.09003 * 109.57119 * 291.40176 * 21 10 8 39 39 H 1.08994 * 109.75748 * 177.40488 * 22 21 10 40 40 H 1.09004 * 109.60815 * 56.69027 * 22 21 10 41 41 H 0.97001 * 120.53985 * 346.45109 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6972 -0.2364 2.4859 6 6 2.1578 -0.8868 3.6127 7 6 2.9574 -2.0176 3.4857 8 6 3.2893 -2.4945 2.2274 9 6 2.8259 -1.8336 1.1019 10 6 4.1431 -3.7224 2.0512 11 1 3.5030 -4.5794 1.8418 12 6 5.1011 -3.5081 0.8776 13 6 5.8714 -4.7775 0.6198 14 1 5.6950 -5.6500 1.2314 15 6 6.8006 -4.8254 -0.3978 16 7 7.0150 -3.7632 -1.1430 17 14 7.7548 -6.3991 -0.7179 18 1 7.3307 -7.4410 0.2514 19 1 7.4840 -6.8697 -2.1000 20 1 9.2080 -6.1376 -0.5599 21 6 4.9511 -3.9986 3.3191 22 6 4.0047 -4.0013 4.5214 23 7 3.4174 -2.6598 4.6406 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9562 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.0754 0.6413 2.5842 32 1 1.8964 -0.5179 4.5936 33 1 3.0849 -2.1990 0.1192 34 1 4.5314 -3.2416 -0.0125 35 1 5.7964 -2.7039 1.1183 36 1 7.6690 -3.7968 -1.8586 37 1 5.4403 -4.9691 3.2362 38 1 5.7033 -3.2205 3.4494 39 1 4.5606 -4.2427 5.4274 40 1 3.2158 -4.7369 4.3644 41 1 3.3534 -2.2248 5.5052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084018753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:20 Heat of formation + Delta-G solvation = -20.271278 kcal Electronic energy + Delta-G solvation = -19468.144946 eV Core-core repulsion = 16731.474341 eV Total energy + Delta-G solvation = -2736.670605 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.13507 -38.32526 -36.12373 -35.09407 -34.13257 -30.90569 -30.47812 -29.00867 -27.90078 -25.99720 -24.46194 -23.88775 -22.32368 -21.67197 -19.57809 -18.60205 -18.15025 -17.24462 -16.54429 -16.39730 -15.31403 -15.16353 -14.89826 -14.67393 -14.50597 -14.32380 -14.21376 -14.01085 -13.58879 -13.41100 -13.14723 -12.98046 -12.83694 -12.69736 -12.46890 -12.29334 -12.08018 -11.97288 -11.60907 -11.51284 -11.43295 -10.98661 -10.92921 -10.58306 -10.50037 -9.47100 -8.18441 -8.07639 -6.28399 0.64365 0.79304 1.39053 1.39429 1.52543 2.40956 2.71150 3.02157 3.14859 3.85945 3.99116 4.06843 4.16987 4.21576 4.28739 4.42673 4.47910 4.59854 4.62223 4.72408 4.76590 4.83501 4.87791 4.90367 5.03814 5.04669 5.18942 5.20202 5.27811 5.34236 5.36586 5.39455 5.47908 5.51011 5.57305 5.68006 5.83745 5.84470 6.00341 6.09694 6.27278 6.52427 6.87477 7.10241 7.40038 8.94207 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018152 B = 0.006212 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.130473 B = 4506.662861 C = 5754.336451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 C -0.137 4.137 4 C -0.136 4.136 5 C -0.078 4.078 6 C -0.190 4.190 7 C 0.197 3.803 8 C -0.157 4.157 9 C -0.095 4.095 10 C -0.032 4.032 11 H 0.053 0.947 12 C 0.046 3.954 13 C -0.530 4.530 14 H 0.064 0.936 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.963 3.037 18 H -0.259 1.259 19 H -0.281 1.281 20 H -0.280 1.280 21 C -0.116 4.116 22 C 0.130 3.870 23 N -0.747 5.747 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.093 0.907 34 H -0.009 1.009 35 H -0.021 1.021 36 H 0.261 0.739 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.106 0.894 40 H 0.056 0.944 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.935 6.643 10.343 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 C -0.194 4.194 4 C -0.137 4.137 5 C -0.097 4.097 6 C -0.212 4.212 7 C 0.094 3.906 8 C -0.162 4.162 9 C -0.114 4.114 10 C -0.051 4.051 11 H 0.071 0.929 12 C 0.009 3.991 13 C -0.568 4.568 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.576 5.576 17 Si 0.788 3.212 18 H -0.182 1.182 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.154 4.154 22 C 0.006 3.994 23 N -0.381 5.381 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.111 0.889 34 H 0.009 0.991 35 H -0.003 1.003 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.075 0.925 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -11.763 6.507 10.190 16.868 hybrid contribution 1.070 -0.690 -0.649 1.429 sum -10.693 5.817 9.541 15.467 Atomic orbital electron populations 1.21788 0.93009 1.01571 1.02729 1.20041 0.96900 0.96137 0.94215 1.21809 1.00155 0.94671 1.02784 1.19742 1.01242 0.96756 0.96004 1.20875 0.98787 0.99319 0.90675 1.20894 1.02560 0.97714 1.00065 1.17727 0.93273 0.93006 0.86558 1.19640 1.03235 1.00760 0.92519 1.20957 0.97147 0.95903 0.97378 1.19818 0.94989 0.93785 0.96493 0.92894 1.18974 0.92787 0.95127 0.92218 1.21687 1.21089 0.98620 1.15406 0.91773 1.25986 0.98325 0.99773 0.95878 1.70132 1.35569 1.30965 1.20933 0.85422 0.78141 0.79466 0.78177 1.18225 1.20642 1.20546 1.21665 0.97590 1.01773 0.94409 1.21497 0.95469 0.83952 0.98522 1.44564 1.68711 1.18274 1.06501 0.91262 0.91335 0.93701 0.92899 0.94528 0.91240 0.91154 0.83689 0.83645 0.88875 0.99055 1.00285 0.92980 0.90899 0.93839 0.87566 0.92541 0.75203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.01 71.98 0.65 -2.24 16 2 C -0.05 -1.50 3.09 -11.54 -0.04 -1.53 16 3 C -0.14 -3.24 9.01 71.98 0.65 -2.59 16 4 C -0.14 -4.42 4.78 -19.87 -0.10 -4.51 16 5 C -0.08 -2.13 8.70 22.24 0.19 -1.94 16 6 C -0.19 -5.23 9.88 22.42 0.22 -5.01 16 7 C 0.20 6.53 6.48 38.14 0.25 6.78 16 8 C -0.16 -6.39 5.47 -19.75 -0.11 -6.50 16 9 C -0.10 -3.88 8.72 22.31 0.19 -3.69 16 10 C -0.03 -1.45 2.29 -11.62 -0.03 -1.48 16 11 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 12 C 0.05 2.54 4.06 29.85 0.12 2.67 16 13 C -0.53 -30.57 8.49 25.60 0.22 -30.35 16 14 H 0.06 3.51 7.00 -2.91 -0.02 3.49 16 15 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 16 N -0.94 -58.55 13.29 21.45 0.28 -58.26 16 17 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 18 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 21 C -0.12 -4.41 5.02 30.55 0.15 -4.26 16 22 C 0.13 3.59 7.09 86.30 0.61 4.20 16 23 N -0.75 -20.27 5.80 -338.37 -1.96 -22.24 16 24 H 0.07 1.27 7.38 -2.38 -0.02 1.25 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.05 1.65 7.87 -2.39 -0.02 1.63 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.40 7.39 -2.38 -0.02 1.38 16 31 H 0.15 2.96 7.10 -2.91 -0.02 2.94 16 32 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.09 4.29 6.11 -2.91 -0.02 4.27 16 34 H -0.01 -0.53 6.21 -2.39 -0.01 -0.55 16 35 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.07 2.81 7.15 -2.39 -0.02 2.79 16 38 H 0.04 1.79 8.13 -2.39 -0.02 1.77 16 39 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.41 8.30 8.86 -92.71 -0.82 7.48 16 Total: -1.00 -69.13 322.17 3.99 -65.15 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.19 Total: 18.49 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 3.45 Total: -50.13 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -1.68 Total: -80.50 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -69.13 3.99 -65.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084018753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.876 kcal (2) G-P(sol) polarization free energy of solvation -69.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds