Wall clock time and date at job start Mon Mar 30 2020 07:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47322 * 2 1 4 4 C 1.52997 * 109.47291 * 239.99672 * 2 1 3 5 5 C 1.50706 * 109.47348 * 119.99753 * 2 1 3 6 6 C 1.38314 * 119.91565 * 0.02562 * 5 2 1 7 7 C 1.38025 * 119.90677 * 179.97438 * 6 5 2 8 8 C 1.39073 * 120.03488 * 0.02562 * 7 6 5 9 9 C 1.38613 * 120.02165 * 0.07462 * 8 7 6 10 10 C 1.38117 * 119.92347 * 179.72447 * 5 2 1 11 11 C 1.50598 * 121.49691 * 179.75827 * 9 8 7 12 12 H 1.08991 * 109.29623 * 260.30396 * 11 9 8 13 13 C 1.50705 * 109.13142 * 140.82186 * 11 9 8 14 14 H 1.08003 * 120.00146 * 359.07301 * 13 11 9 15 15 C 1.37873 * 119.99849 * 179.06051 * 13 11 9 16 16 N 1.31517 * 120.00150 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 120.00126 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47048 * 90.00340 * 17 15 13 19 19 H 1.48499 * 109.47187 * 210.00283 * 17 15 13 20 20 H 1.48496 * 109.46708 * 330.00325 * 17 15 13 21 21 C 1.52849 * 110.48630 * 20.61949 * 11 9 8 22 22 C 1.53431 * 108.84275 * 308.65704 * 21 11 9 23 23 N 1.39920 * 119.13334 * 180.23812 * 8 7 6 24 24 H 1.09002 * 109.46857 * 300.00471 * 1 2 3 25 25 H 1.09002 * 109.47200 * 59.99673 * 1 2 3 26 26 H 1.09000 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47120 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46792 * 300.00022 * 3 2 1 29 29 H 1.09002 * 109.47539 * 59.99947 * 3 2 1 30 30 H 1.09001 * 109.47000 * 300.00701 * 4 2 1 31 31 H 1.09002 * 109.46917 * 59.99921 * 4 2 1 32 32 H 1.08995 * 109.47505 * 180.02562 * 4 2 1 33 33 H 1.08001 * 120.04681 * 359.91007 * 6 5 2 34 34 H 1.07995 * 119.97917 * 180.02562 * 7 6 5 35 35 H 1.08010 * 119.84371 * 359.94650 * 10 5 2 36 36 H 0.97001 * 120.00385 * 179.97438 * 16 15 13 37 37 H 1.09011 * 109.57340 * 188.85211 * 21 11 9 38 38 H 1.09000 * 109.58319 * 68.46940 * 21 11 9 39 39 H 1.08998 * 109.79400 * 303.63605 * 22 21 11 40 40 H 1.09001 * 109.79455 * 182.78520 * 22 21 11 41 41 H 0.96996 * 120.54107 * 13.26257 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.1321 -1.2358 2.1396 7 6 1.5924 -1.8868 3.2663 8 6 2.9596 -2.0137 3.4871 9 6 3.8612 -1.4850 2.5766 10 6 3.3906 -0.8406 1.4446 11 6 5.3483 -1.5986 2.7854 12 1 5.7273 -0.6616 3.1933 13 6 6.0137 -1.8705 1.4608 14 1 5.4165 -1.9667 0.5661 15 6 7.3849 -1.9961 1.3912 16 7 8.1122 -1.8792 2.4807 17 14 8.2099 -2.3325 -0.2507 18 1 8.5433 -1.0444 -0.9102 19 1 9.4543 -3.1118 -0.0290 20 1 7.2877 -3.1086 -1.1181 21 6 5.6671 -2.7371 3.7541 22 6 4.8178 -2.5632 5.0200 23 7 3.4055 -2.6817 4.6329 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 0.0704 -1.1359 1.9687 34 1 0.8905 -2.2979 3.9766 35 1 4.0891 -0.4334 0.7285 36 1 9.0769 -1.9680 2.4318 37 1 6.7247 -2.7077 4.0169 38 1 5.4320 -3.6925 3.2850 39 1 5.0003 -1.5804 5.4548 40 1 5.0689 -3.3397 5.7426 41 1 2.7920 -3.2139 5.1632 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084018757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:26 Heat of formation + Delta-G solvation = 3.790641 kcal Electronic energy + Delta-G solvation = -19944.974480 eV Core-core repulsion = 17209.347278 eV Total energy + Delta-G solvation = -2735.627202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.53711 -37.29606 -34.38199 -33.61877 -31.25109 -29.32342 -28.34592 -26.92437 -26.87484 -25.61153 -22.92298 -22.12224 -21.25423 -19.60676 -17.62255 -16.75160 -16.27568 -15.46804 -14.95157 -14.53881 -13.93408 -13.90591 -13.37718 -13.13742 -12.77409 -12.66431 -12.35260 -12.25507 -12.11906 -11.82544 -11.52095 -11.37033 -11.33457 -10.99812 -10.90238 -10.68901 -10.63999 -10.48445 -10.10513 -10.01002 -9.80329 -9.34230 -9.00288 -8.78673 -8.39716 -7.72423 -6.47385 -6.00931 -4.05049 2.32934 2.40719 3.30038 3.37025 3.41092 4.25158 4.42218 4.68703 5.10072 5.19059 5.30204 5.36855 5.67085 5.76743 5.78674 5.82493 5.92961 5.93360 6.05547 6.13351 6.19869 6.21118 6.24011 6.33034 6.36045 6.39838 6.48461 6.56350 6.66950 6.69704 6.88829 7.08412 7.15082 7.21072 7.44646 7.53197 7.63884 7.76899 7.90586 8.09088 8.16644 8.43484 8.54083 8.97274 9.58951 11.05704 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.008302 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.771962 B = 3371.755500 C = 4762.304277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.019 4.019 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.137 4.137 6 C -0.101 4.101 7 C -0.204 4.204 8 C 0.199 3.801 9 C -0.104 4.104 10 C -0.062 4.062 11 C 0.085 3.915 12 H 0.036 0.964 13 C -0.503 4.503 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.121 4.121 22 C 0.119 3.881 23 N -0.757 5.757 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.260 0.740 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.499 1.798 -0.329 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 C -0.194 4.194 4 C -0.195 4.195 5 C -0.139 4.139 6 C -0.120 4.120 7 C -0.227 4.227 8 C 0.097 3.903 9 C -0.108 4.108 10 C -0.081 4.081 11 C 0.067 3.933 12 H 0.054 0.946 13 C -0.541 4.541 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.160 4.160 22 C -0.006 4.006 23 N -0.388 5.388 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.091 1.822 -0.239 11.242 hybrid contribution 0.300 -0.539 -0.564 0.836 sum -10.790 1.283 -0.802 10.896 Atomic orbital electron populations 1.21914 0.95237 1.01380 1.01006 1.19293 0.94567 0.94697 0.93318 1.21882 1.01660 0.95088 1.00793 1.21888 1.01779 0.99909 0.95941 1.19428 0.93583 1.03922 0.96948 1.20592 0.98311 0.98892 0.94165 1.20454 0.93227 1.08362 1.00658 1.17732 0.91878 0.93274 0.87378 1.20090 0.97247 1.00084 0.93407 1.20844 0.93717 0.97020 0.96510 1.17561 0.85354 0.94874 0.95510 0.94614 1.21232 0.91372 1.48344 0.93164 0.92157 1.24963 0.97456 0.95282 0.96306 1.69873 1.05674 1.50553 1.27073 0.86625 0.78980 0.78324 0.84332 1.20676 1.21306 1.19888 1.21933 1.00866 0.99528 0.93653 1.21721 0.81033 0.99437 0.98371 1.44672 1.10270 1.56038 1.27832 0.92681 0.93230 0.92665 0.92129 0.93303 0.92901 0.92863 0.93329 0.92037 0.87148 0.87786 0.85873 0.93031 0.88484 0.93715 0.93625 0.92341 0.77936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.13 37.16 0.26 -1.44 16 2 C -0.02 -0.28 0.85 -155.66 -0.13 -0.41 16 3 C -0.14 -1.91 8.29 37.16 0.31 -1.60 16 4 C -0.14 -2.00 8.28 37.16 0.31 -1.69 16 5 C -0.14 -2.43 4.76 -104.64 -0.50 -2.93 16 6 C -0.10 -1.71 8.97 -39.63 -0.36 -2.06 16 7 C -0.20 -3.61 9.88 -39.35 -0.39 -4.00 16 8 C 0.20 3.99 6.47 -83.72 -0.54 3.45 16 9 C -0.10 -2.34 5.46 -104.44 -0.57 -2.91 16 10 C -0.06 -1.29 7.41 -39.53 -0.29 -1.59 16 11 C 0.09 2.12 2.25 -93.05 -0.21 1.91 16 12 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 13 C -0.50 -13.52 7.77 -34.44 -0.27 -13.78 16 14 H 0.06 1.62 6.54 -52.48 -0.34 1.28 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -24.83 11.42 55.43 0.63 -24.20 16 17 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.12 -2.81 5.02 -26.59 -0.13 -2.95 16 22 C 0.12 2.24 7.11 -3.59 -0.03 2.22 16 23 N -0.76 -13.66 5.80 -58.09 -0.34 -13.99 16 24 H 0.05 0.65 7.51 -51.93 -0.39 0.26 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.67 7.51 -51.93 -0.39 0.28 16 27 H 0.06 0.91 7.39 -51.93 -0.38 0.53 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.98 7.36 -51.93 -0.38 0.59 16 33 H 0.11 1.58 5.89 -52.49 -0.31 1.28 16 34 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.12 2.66 5.92 -52.48 -0.31 2.35 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.10 2.45 6.35 -51.92 -0.33 2.12 16 38 H 0.04 1.09 8.12 -51.93 -0.42 0.67 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.39 5.80 8.86 -40.82 -0.36 5.44 16 LS Contribution 315.99 15.07 4.76 4.76 Total: -1.00 -27.90 315.99 -9.15 -37.06 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.56 Total: 6.53 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -2.63 Total: -26.22 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.30 Total: -38.19 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.90 -9.15 -37.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084018757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.848 kcal (2) G-P(sol) polarization free energy of solvation -27.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds