Wall clock time and date at job start Mon Mar 30 2020 07:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47322 * 2 1 4 4 C 1.52997 * 109.47291 * 239.99672 * 2 1 3 5 5 C 1.50706 * 109.47348 * 119.99753 * 2 1 3 6 6 C 1.38314 * 119.91565 * 0.02562 * 5 2 1 7 7 C 1.38025 * 119.90677 * 179.97438 * 6 5 2 8 8 C 1.39073 * 120.03488 * 0.02562 * 7 6 5 9 9 C 1.38613 * 120.02165 * 0.07462 * 8 7 6 10 10 C 1.38117 * 119.92347 * 179.72447 * 5 2 1 11 11 C 1.50598 * 121.49691 * 179.75827 * 9 8 7 12 12 H 1.08991 * 109.29623 * 260.30396 * 11 9 8 13 13 C 1.50705 * 109.13142 * 140.82186 * 11 9 8 14 14 H 1.08003 * 120.00146 * 359.07301 * 13 11 9 15 15 C 1.37873 * 119.99849 * 179.06051 * 13 11 9 16 16 N 1.31517 * 120.00150 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 120.00126 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47048 * 90.00340 * 17 15 13 19 19 H 1.48499 * 109.47187 * 210.00283 * 17 15 13 20 20 H 1.48496 * 109.46708 * 330.00325 * 17 15 13 21 21 C 1.52849 * 110.48630 * 20.61949 * 11 9 8 22 22 C 1.53431 * 108.84275 * 308.65704 * 21 11 9 23 23 N 1.39920 * 119.13334 * 180.23812 * 8 7 6 24 24 H 1.09002 * 109.46857 * 300.00471 * 1 2 3 25 25 H 1.09002 * 109.47200 * 59.99673 * 1 2 3 26 26 H 1.09000 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47120 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46792 * 300.00022 * 3 2 1 29 29 H 1.09002 * 109.47539 * 59.99947 * 3 2 1 30 30 H 1.09001 * 109.47000 * 300.00701 * 4 2 1 31 31 H 1.09002 * 109.46917 * 59.99921 * 4 2 1 32 32 H 1.08995 * 109.47505 * 180.02562 * 4 2 1 33 33 H 1.08001 * 120.04681 * 359.91007 * 6 5 2 34 34 H 1.07995 * 119.97917 * 180.02562 * 7 6 5 35 35 H 1.08010 * 119.84371 * 359.94650 * 10 5 2 36 36 H 0.97001 * 120.00385 * 179.97438 * 16 15 13 37 37 H 1.09011 * 109.57340 * 188.85211 * 21 11 9 38 38 H 1.09000 * 109.58319 * 68.46940 * 21 11 9 39 39 H 1.08998 * 109.79400 * 303.63605 * 22 21 11 40 40 H 1.09001 * 109.79455 * 182.78520 * 22 21 11 41 41 H 0.96996 * 120.54107 * 13.26257 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.1321 -1.2358 2.1396 7 6 1.5924 -1.8868 3.2663 8 6 2.9596 -2.0137 3.4871 9 6 3.8612 -1.4850 2.5766 10 6 3.3906 -0.8406 1.4446 11 6 5.3483 -1.5986 2.7854 12 1 5.7273 -0.6616 3.1933 13 6 6.0137 -1.8705 1.4608 14 1 5.4165 -1.9667 0.5661 15 6 7.3849 -1.9961 1.3912 16 7 8.1122 -1.8792 2.4807 17 14 8.2099 -2.3325 -0.2507 18 1 8.5433 -1.0444 -0.9102 19 1 9.4543 -3.1118 -0.0290 20 1 7.2877 -3.1086 -1.1181 21 6 5.6671 -2.7371 3.7541 22 6 4.8178 -2.5632 5.0200 23 7 3.4055 -2.6817 4.6329 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 0.0704 -1.1359 1.9687 34 1 0.8905 -2.2979 3.9766 35 1 4.0891 -0.4334 0.7285 36 1 9.0769 -1.9680 2.4318 37 1 6.7247 -2.7077 4.0169 38 1 5.4320 -3.6925 3.2850 39 1 5.0003 -1.5804 5.4548 40 1 5.0689 -3.3397 5.7426 41 1 2.7920 -3.2139 5.1632 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084018757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:24 Heat of formation + Delta-G solvation = -10.535243 kcal Electronic energy + Delta-G solvation = -19945.595697 eV Core-core repulsion = 17209.347278 eV Total energy + Delta-G solvation = -2736.248419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.02135 -38.68703 -35.96980 -35.30067 -33.11840 -30.85868 -29.85423 -28.05904 -28.01909 -27.50197 -24.54860 -23.74284 -22.84670 -21.05963 -19.11715 -18.36288 -18.23545 -16.90385 -16.58694 -16.23366 -15.33168 -15.05077 -14.87010 -14.76766 -14.36373 -14.15563 -14.03681 -13.64388 -13.55809 -13.10009 -13.04961 -12.85153 -12.62865 -12.55940 -12.48103 -12.45302 -12.16217 -11.85550 -11.69295 -11.57420 -11.33083 -10.99560 -10.74964 -10.58449 -10.35412 -9.30755 -8.11077 -7.95836 -6.21052 0.81382 0.92287 1.37878 1.38874 1.48952 2.41615 2.81257 3.12445 3.22816 3.92357 4.02602 4.26732 4.28375 4.33816 4.46710 4.52783 4.58721 4.67917 4.77282 4.80719 4.85007 4.94162 4.99017 5.01607 5.09894 5.12191 5.13905 5.23383 5.29636 5.34391 5.49355 5.50841 5.53954 5.59722 5.73262 5.78779 5.88162 6.00954 6.16679 6.27283 6.41603 6.64527 6.86490 7.20678 7.45468 8.95149 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.008302 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.771962 B = 3371.755500 C = 4762.304277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.022 4.022 3 C -0.135 4.135 4 C -0.136 4.136 5 C -0.136 4.136 6 C -0.093 4.093 7 C -0.197 4.197 8 C 0.184 3.816 9 C -0.144 4.144 10 C -0.077 4.077 11 C 0.086 3.914 12 H -0.006 1.006 13 C -0.517 4.517 14 H 0.050 0.950 15 C 0.014 3.986 16 N -0.917 5.917 17 Si 0.948 3.052 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.272 1.272 21 C -0.113 4.113 22 C 0.129 3.871 23 N -0.749 5.749 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.261 0.739 37 H 0.071 0.929 38 H 0.026 0.974 39 H 0.040 0.960 40 H 0.093 0.907 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.515 1.529 -0.628 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.022 4.022 3 C -0.192 4.192 4 C -0.194 4.194 5 C -0.138 4.138 6 C -0.111 4.111 7 C -0.219 4.219 8 C 0.082 3.918 9 C -0.149 4.149 10 C -0.096 4.096 11 C 0.068 3.932 12 H 0.012 0.988 13 C -0.555 4.555 14 H 0.069 0.931 15 C -0.184 4.184 16 N -0.557 5.557 17 Si 0.774 3.226 18 H -0.201 1.201 19 H -0.206 1.206 20 H -0.197 1.197 21 C -0.151 4.151 22 C 0.004 3.996 23 N -0.382 5.382 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -14.127 1.546 -0.528 14.221 hybrid contribution 1.193 -0.409 -0.501 1.357 sum -12.934 1.137 -1.029 13.025 Atomic orbital electron populations 1.21878 0.92503 1.02207 1.02480 1.19396 0.96679 0.94393 0.91683 1.21861 1.00164 0.95143 1.02069 1.21872 1.00111 1.00218 0.97167 1.19765 0.92263 1.03375 0.98375 1.21048 0.99936 0.97054 0.93073 1.20837 0.92420 1.07332 1.01323 1.17892 0.92739 0.93614 0.87553 1.19984 0.96037 1.03224 0.95612 1.20749 0.95126 0.97782 0.95936 1.17397 0.87594 0.93382 0.94826 0.98839 1.21485 0.91862 1.48201 0.93947 0.93129 1.25682 0.98020 0.95256 0.99466 1.69998 1.05773 1.51205 1.28674 0.85697 0.78009 0.78290 0.80573 1.20116 1.20648 1.19683 1.21697 1.00267 0.97761 0.95420 1.21539 0.81038 1.00442 0.96553 1.44523 1.09995 1.56090 1.27570 0.91868 0.91232 0.92101 0.94565 0.90866 0.92735 0.93092 0.90805 0.94711 0.83468 0.84352 0.88407 0.93001 0.91082 0.95513 0.94138 0.88856 0.75686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 7.13 71.98 0.51 -2.22 16 2 C -0.02 -0.59 0.85 -52.93 -0.05 -0.64 16 3 C -0.14 -3.61 8.29 71.98 0.60 -3.01 16 4 C -0.14 -3.80 8.28 71.98 0.60 -3.21 16 5 C -0.14 -4.68 4.76 -19.87 -0.09 -4.78 16 6 C -0.09 -2.84 8.97 22.24 0.20 -2.64 16 7 C -0.20 -6.36 9.88 22.42 0.22 -6.14 16 8 C 0.18 7.24 6.47 38.14 0.25 7.49 16 9 C -0.14 -6.71 5.46 -19.75 -0.11 -6.82 16 10 C -0.08 -3.33 7.41 22.30 0.17 -3.17 16 11 C 0.09 4.58 2.25 -12.37 -0.03 4.55 16 12 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 13 C -0.52 -29.44 7.77 25.60 0.20 -29.24 16 14 H 0.05 2.90 6.54 -2.91 -0.02 2.88 16 15 C 0.01 0.80 5.30 84.65 0.45 1.25 16 16 N -0.92 -53.32 11.42 21.45 0.24 -53.07 16 17 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 21 C -0.11 -5.47 5.02 30.69 0.15 -5.32 16 22 C 0.13 4.86 7.11 86.44 0.61 5.48 16 23 N -0.75 -25.94 5.80 -337.69 -1.96 -27.90 16 24 H 0.06 1.21 7.51 -2.39 -0.02 1.19 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.19 7.51 -2.39 -0.02 1.17 16 27 H 0.04 1.12 7.39 -2.38 -0.02 1.10 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.13 7.36 -2.39 -0.02 1.11 16 33 H 0.15 3.45 5.89 -2.91 -0.02 3.43 16 34 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 35 H 0.10 4.59 5.92 -2.91 -0.02 4.58 16 36 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.07 3.78 6.35 -2.38 -0.02 3.77 16 38 H 0.03 1.34 8.12 -2.39 -0.02 1.32 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.41 10.99 8.86 -92.71 -0.82 10.17 16 Total: -1.00 -63.90 315.99 4.18 -59.71 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.19 Total: 22.94 kcal Atomic # 6 Polarization: -52.09 SS G_CDS: 3.68 Total: -48.41 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.71 Total: -80.97 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.90 4.18 -59.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084018757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.176 kcal (2) G-P(sol) polarization free energy of solvation -63.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds