Wall clock time and date at job start Mon Mar 30 2020 07:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46791 * 2 1 4 4 C 1.52998 * 109.47027 * 240.00179 * 2 1 3 5 5 C 1.50700 * 109.47194 * 119.99846 * 2 1 3 6 6 C 1.38313 * 119.91813 * 240.01781 * 5 2 1 7 7 C 1.38022 * 119.90828 * 180.09423 * 6 5 2 8 8 C 1.39080 * 120.03462 * 359.93646 * 7 6 5 9 9 C 1.38603 * 120.01965 * 359.92532 * 8 7 6 10 10 C 1.38121 * 119.91847 * 60.00802 * 5 2 1 11 11 C 1.50600 * 121.50478 * 180.21380 * 9 8 7 12 12 H 1.08996 * 109.13351 * 99.69882 * 11 9 8 13 13 C 1.50695 * 109.29883 * 219.18098 * 11 9 8 14 14 H 1.08000 * 120.00129 * 6.72851 * 13 11 9 15 15 C 1.37879 * 119.99896 * 186.73350 * 13 11 9 16 16 N 1.31514 * 120.00013 * 198.81592 * 15 13 11 17 17 Si 1.86795 * 120.00203 * 18.81870 * 15 13 11 18 18 H 1.48501 * 109.47247 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.46927 * 299.99947 * 17 15 13 20 20 H 1.48501 * 109.47236 * 59.99877 * 17 15 13 21 21 C 1.52849 * 110.48898 * 339.49299 * 11 9 8 22 22 C 1.53429 * 108.83947 * 51.31470 * 21 11 9 23 23 N 1.39920 * 119.13410 * 179.88395 * 8 7 6 24 24 H 1.08997 * 109.47084 * 299.99552 * 1 2 3 25 25 H 1.08993 * 109.47471 * 60.00207 * 1 2 3 26 26 H 1.09002 * 109.46715 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47042 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47315 * 299.99961 * 3 2 1 29 29 H 1.08996 * 109.47454 * 60.00253 * 3 2 1 30 30 H 1.08993 * 109.47476 * 299.99629 * 4 2 1 31 31 H 1.08999 * 109.47252 * 59.99933 * 4 2 1 32 32 H 1.09002 * 109.47279 * 179.97438 * 4 2 1 33 33 H 1.07998 * 120.04846 * 0.05658 * 6 5 2 34 34 H 1.08004 * 119.98361 * 179.97438 * 7 6 5 35 35 H 1.07998 * 119.84868 * 359.97438 * 10 5 2 36 36 H 0.97002 * 120.00523 * 354.71166 * 16 15 13 37 37 H 1.09006 * 109.57864 * 171.12419 * 21 11 9 38 38 H 1.09009 * 109.57632 * 291.50844 * 21 11 9 39 39 H 1.09000 * 109.79894 * 56.34307 * 22 21 11 40 40 H 1.09009 * 109.79722 * 177.13669 * 22 21 11 41 41 H 0.96996 * 120.54442 * 346.66273 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 2.8271 -0.0364 2.1400 7 6 3.2887 -0.6878 3.2659 8 6 2.9539 -2.0196 3.4860 9 6 2.1550 -2.6934 2.5755 10 6 1.6978 -2.0328 1.4473 11 6 1.7681 -4.1340 2.7830 12 1 0.7586 -4.1775 3.1916 13 6 1.8013 -4.8542 1.4597 14 1 2.1783 -4.3521 0.5810 15 6 1.3502 -6.1540 1.3708 16 7 1.7041 -6.9046 0.3505 17 14 0.2361 -6.8490 2.6994 18 1 -0.1054 -8.2568 2.3726 19 1 0.9368 -6.8012 4.0078 20 1 -1.0081 -6.0418 2.7744 21 6 2.7351 -4.8134 3.7524 22 6 2.8522 -3.9549 5.0186 23 7 3.4341 -2.6623 4.6324 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7488 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 3.0867 0.9979 1.9691 34 1 3.9097 -0.1628 3.9766 35 1 1.0764 -2.5540 0.7341 36 1 2.2186 -6.5222 -0.3775 37 1 2.3558 -5.8011 4.0145 38 1 3.7148 -4.9089 3.2840 39 1 1.8642 -3.8002 5.4524 40 1 3.4994 -4.4506 5.7422 41 1 4.1399 -2.2611 5.1632 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084018760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:29 Heat of formation + Delta-G solvation = 4.805613 kcal Electronic energy + Delta-G solvation = -19992.269241 eV Core-core repulsion = 17256.686051 eV Total energy + Delta-G solvation = -2735.583190 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -39.66984 -37.43684 -34.51097 -33.70493 -31.51177 -29.60214 -28.55040 -27.00392 -26.90299 -25.50580 -22.82627 -22.18245 -21.05797 -19.72645 -17.74331 -17.47122 -16.83606 -15.65144 -15.12966 -14.24373 -13.95416 -13.83087 -13.62261 -13.23066 -12.92895 -12.83015 -12.60576 -12.32517 -12.19097 -11.91631 -11.67880 -11.57734 -11.40095 -11.35336 -10.80831 -10.67625 -10.61225 -10.43552 -10.03221 -9.96282 -9.88918 -9.53371 -9.10756 -8.77580 -8.22287 -7.84130 -6.64536 -6.41051 -4.02437 2.22178 2.29713 3.34817 3.42824 3.59882 4.07230 4.48896 4.55707 5.05163 5.14565 5.27107 5.33044 5.54333 5.65372 5.66468 5.78161 5.80071 5.90240 5.91539 5.99809 6.02298 6.10107 6.14678 6.21570 6.24089 6.31247 6.34613 6.38065 6.60151 6.63823 6.65194 6.79291 6.90949 6.99056 7.10652 7.27367 7.41422 7.56096 7.67187 7.98824 8.20750 8.37835 8.41174 8.94871 9.64440 10.96139 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.007910 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.880982 B = 3538.867489 C = 4582.500969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.019 4.019 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.135 4.135 6 C -0.099 4.099 7 C -0.202 4.202 8 C 0.197 3.803 9 C -0.100 4.100 10 C -0.056 4.056 11 C 0.060 3.940 12 H 0.028 0.972 13 C -0.589 4.589 14 H 0.061 0.939 15 C 0.030 3.970 16 N -0.907 5.907 17 Si 1.044 2.956 18 H -0.287 1.287 19 H -0.275 1.275 20 H -0.283 1.283 21 C -0.140 4.140 22 C 0.120 3.880 23 N -0.756 5.756 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.267 0.733 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.763 12.586 4.541 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.019 4.019 3 C -0.196 4.196 4 C -0.195 4.195 5 C -0.137 4.137 6 C -0.117 4.117 7 C -0.225 4.225 8 C 0.096 3.904 9 C -0.104 4.104 10 C -0.075 4.075 11 C 0.041 3.959 12 H 0.045 0.955 13 C -0.627 4.627 14 H 0.079 0.921 15 C -0.175 4.175 16 N -0.541 5.541 17 Si 0.873 3.127 18 H -0.213 1.213 19 H -0.202 1.202 20 H -0.210 1.210 21 C -0.178 4.178 22 C -0.005 4.005 23 N -0.388 5.388 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.108 11.004 5.048 12.107 hybrid contribution 1.212 1.509 -0.274 1.955 sum 1.105 12.514 4.774 13.439 Atomic orbital electron populations 1.21881 0.94483 1.02222 1.00853 1.19302 0.95123 0.94218 0.93266 1.21916 1.00866 0.95700 1.01073 1.21882 1.00953 1.00748 0.95904 1.19461 1.02488 0.94777 0.96946 1.20629 0.98262 0.98817 0.94032 1.20455 1.07923 0.93393 1.00693 1.17714 0.94796 0.90631 0.87289 1.19757 1.00054 0.96846 0.93784 1.20867 0.97946 0.92429 0.96257 1.17858 0.93543 0.87980 0.96481 0.95467 1.21988 1.46472 1.00377 0.93857 0.92131 1.25737 0.96721 0.93501 1.01560 1.70852 1.36437 1.36227 1.10559 0.84059 0.76811 0.76187 0.75668 1.21279 1.20162 1.20977 1.22419 1.01973 0.98715 0.94702 1.21629 0.97127 0.84095 0.97636 1.44569 1.43274 1.23003 1.27937 0.92902 0.93184 0.92144 0.92654 0.93131 0.92663 0.92017 0.93241 0.92897 0.86957 0.87602 0.85701 0.92256 0.91173 0.91996 0.93441 0.91829 0.77602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.29 37.16 0.31 -1.62 16 2 C -0.02 -0.28 0.85 -155.66 -0.13 -0.42 16 3 C -0.14 -1.70 7.13 37.16 0.26 -1.44 16 4 C -0.14 -2.06 8.29 37.16 0.31 -1.75 16 5 C -0.13 -2.39 4.76 -104.64 -0.50 -2.89 16 6 C -0.10 -1.64 8.97 -39.63 -0.36 -2.00 16 7 C -0.20 -3.47 9.88 -39.35 -0.39 -3.86 16 8 C 0.20 3.82 6.47 -83.72 -0.54 3.28 16 9 C -0.10 -2.21 5.46 -104.44 -0.57 -2.78 16 10 C -0.06 -1.18 7.42 -39.53 -0.29 -1.47 16 11 C 0.06 1.43 1.84 -93.05 -0.17 1.26 16 12 H 0.03 0.67 6.74 -51.93 -0.35 0.32 16 13 C -0.59 -16.17 7.90 -34.44 -0.27 -16.44 16 14 H 0.06 1.80 7.04 -52.49 -0.37 1.43 16 15 C 0.03 0.84 5.33 -17.82 -0.09 0.74 16 16 N -0.91 -27.45 13.69 55.43 0.76 -26.69 16 17 Si 1.04 24.70 26.49 -169.99 -4.50 20.19 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -5.91 5.50 56.52 0.31 -5.60 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.14 -3.01 5.05 -26.59 -0.13 -3.14 16 22 C 0.12 2.07 7.11 -3.59 -0.03 2.05 16 23 N -0.76 -12.87 5.80 -58.08 -0.34 -13.21 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.92 7.38 -51.93 -0.38 0.54 16 27 H 0.05 0.67 7.51 -51.93 -0.39 0.28 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.65 7.51 -51.93 -0.39 0.26 16 30 H 0.06 1.03 7.38 -51.93 -0.38 0.65 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.11 1.58 5.89 -52.49 -0.31 1.27 16 34 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 35 H 0.13 2.78 6.04 -52.49 -0.32 2.47 16 36 H 0.27 8.11 8.73 -40.82 -0.36 7.76 16 37 H 0.07 1.52 4.93 -51.93 -0.26 1.27 16 38 H 0.06 1.43 8.12 -51.92 -0.42 1.01 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 41 H 0.39 5.45 8.86 -40.82 -0.36 5.09 16 LS Contribution 311.63 15.07 4.70 4.70 Total: -1.00 -29.56 311.63 -8.54 -38.10 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.56 Total: 7.38 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: -2.60 Total: -30.48 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.42 Total: -39.89 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -4.50 Total: 20.19 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.56 -8.54 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084018760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.908 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds