Wall clock time and date at job start Mon Mar 30 2020 07:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46791 * 2 1 4 4 C 1.52998 * 109.47027 * 240.00179 * 2 1 3 5 5 C 1.50700 * 109.47194 * 119.99846 * 2 1 3 6 6 C 1.38313 * 119.91813 * 240.01781 * 5 2 1 7 7 C 1.38022 * 119.90828 * 180.09423 * 6 5 2 8 8 C 1.39080 * 120.03462 * 359.93646 * 7 6 5 9 9 C 1.38603 * 120.01965 * 359.92532 * 8 7 6 10 10 C 1.38121 * 119.91847 * 60.00802 * 5 2 1 11 11 C 1.50600 * 121.50478 * 180.21380 * 9 8 7 12 12 H 1.08996 * 109.13351 * 99.69882 * 11 9 8 13 13 C 1.50695 * 109.29883 * 219.18098 * 11 9 8 14 14 H 1.08000 * 120.00129 * 6.72851 * 13 11 9 15 15 C 1.37879 * 119.99896 * 186.73350 * 13 11 9 16 16 N 1.31514 * 120.00013 * 198.81592 * 15 13 11 17 17 Si 1.86795 * 120.00203 * 18.81870 * 15 13 11 18 18 H 1.48501 * 109.47247 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.46927 * 299.99947 * 17 15 13 20 20 H 1.48501 * 109.47236 * 59.99877 * 17 15 13 21 21 C 1.52849 * 110.48898 * 339.49299 * 11 9 8 22 22 C 1.53429 * 108.83947 * 51.31470 * 21 11 9 23 23 N 1.39920 * 119.13410 * 179.88395 * 8 7 6 24 24 H 1.08997 * 109.47084 * 299.99552 * 1 2 3 25 25 H 1.08993 * 109.47471 * 60.00207 * 1 2 3 26 26 H 1.09002 * 109.46715 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47042 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47315 * 299.99961 * 3 2 1 29 29 H 1.08996 * 109.47454 * 60.00253 * 3 2 1 30 30 H 1.08993 * 109.47476 * 299.99629 * 4 2 1 31 31 H 1.08999 * 109.47252 * 59.99933 * 4 2 1 32 32 H 1.09002 * 109.47279 * 179.97438 * 4 2 1 33 33 H 1.07998 * 120.04846 * 0.05658 * 6 5 2 34 34 H 1.08004 * 119.98361 * 179.97438 * 7 6 5 35 35 H 1.07998 * 119.84868 * 359.97438 * 10 5 2 36 36 H 0.97002 * 120.00523 * 354.71166 * 16 15 13 37 37 H 1.09006 * 109.57864 * 171.12419 * 21 11 9 38 38 H 1.09009 * 109.57632 * 291.50844 * 21 11 9 39 39 H 1.09000 * 109.79894 * 56.34307 * 22 21 11 40 40 H 1.09009 * 109.79722 * 177.13669 * 22 21 11 41 41 H 0.96996 * 120.54442 * 346.66273 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 2.8271 -0.0364 2.1400 7 6 3.2887 -0.6878 3.2659 8 6 2.9539 -2.0196 3.4860 9 6 2.1550 -2.6934 2.5755 10 6 1.6978 -2.0328 1.4473 11 6 1.7681 -4.1340 2.7830 12 1 0.7586 -4.1775 3.1916 13 6 1.8013 -4.8542 1.4597 14 1 2.1783 -4.3521 0.5810 15 6 1.3502 -6.1540 1.3708 16 7 1.7041 -6.9046 0.3505 17 14 0.2361 -6.8490 2.6994 18 1 -0.1054 -8.2568 2.3726 19 1 0.9368 -6.8012 4.0078 20 1 -1.0081 -6.0418 2.7744 21 6 2.7351 -4.8134 3.7524 22 6 2.8522 -3.9549 5.0186 23 7 3.4341 -2.6623 4.6324 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7488 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 3.0867 0.9979 1.9691 34 1 3.9097 -0.1628 3.9766 35 1 1.0764 -2.5540 0.7341 36 1 2.2186 -6.5222 -0.3775 37 1 2.3558 -5.8011 4.0145 38 1 3.7148 -4.9089 3.2840 39 1 1.8642 -3.8002 5.4524 40 1 3.4994 -4.4506 5.7422 41 1 4.1399 -2.2611 5.1632 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084018760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:28 Heat of formation + Delta-G solvation = -12.573376 kcal Electronic energy + Delta-G solvation = -19993.022850 eV Core-core repulsion = 17256.686051 eV Total energy + Delta-G solvation = -2736.336799 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.12278 -38.79612 -36.04348 -35.39448 -33.45534 -31.06597 -30.01863 -28.13507 -28.09876 -27.32587 -24.32787 -23.79903 -22.70393 -21.16036 -19.61540 -19.19215 -18.27654 -17.02864 -16.57961 -15.84663 -15.47732 -15.17521 -15.04174 -14.70548 -14.59527 -14.25281 -14.17661 -13.77851 -13.63293 -13.43277 -13.16580 -13.03304 -12.62546 -12.55455 -12.47846 -12.26576 -12.03668 -11.87379 -11.68336 -11.49232 -11.40640 -11.12596 -10.77251 -10.59328 -10.33623 -9.41875 -8.70829 -8.04019 -6.30814 0.73136 0.84269 1.41743 1.51615 1.70815 2.48341 2.74296 3.01657 3.16153 3.85093 3.94255 4.18117 4.19296 4.21943 4.32165 4.39225 4.48379 4.55730 4.69162 4.71140 4.76266 4.81403 4.87802 4.91794 4.95321 5.04513 5.05235 5.07860 5.17317 5.23790 5.31880 5.40647 5.44682 5.46068 5.55497 5.64744 5.87813 5.99106 6.05795 6.10839 6.25620 6.57477 6.62042 7.13972 7.44827 8.65596 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.007910 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.880982 B = 3538.867489 C = 4582.500969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.022 4.022 3 C -0.133 4.133 4 C -0.135 4.135 5 C -0.138 4.138 6 C -0.091 4.091 7 C -0.195 4.195 8 C 0.188 3.812 9 C -0.144 4.144 10 C -0.077 4.077 11 C 0.059 3.941 12 H 0.021 0.979 13 C -0.584 4.584 14 H 0.016 0.984 15 C -0.023 4.023 16 N -0.941 5.941 17 Si 1.082 2.918 18 H -0.290 1.290 19 H -0.235 1.235 20 H -0.271 1.271 21 C -0.136 4.136 22 C 0.126 3.874 23 N -0.748 5.748 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.088 0.912 36 H 0.248 0.752 37 H 0.067 0.933 38 H 0.036 0.964 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 15.484 7.231 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.022 4.022 3 C -0.190 4.190 4 C -0.192 4.192 5 C -0.140 4.140 6 C -0.109 4.109 7 C -0.218 4.218 8 C 0.086 3.914 9 C -0.148 4.148 10 C -0.096 4.096 11 C 0.040 3.960 12 H 0.039 0.961 13 C -0.622 4.622 14 H 0.035 0.965 15 C -0.220 4.220 16 N -0.577 5.577 17 Si 0.903 3.097 18 H -0.217 1.217 19 H -0.159 1.159 20 H -0.196 1.196 21 C -0.175 4.175 22 C 0.002 3.998 23 N -0.381 5.381 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 0.456 13.936 7.762 15.958 hybrid contribution 1.080 0.712 -1.237 1.789 sum 1.536 14.648 6.525 16.109 Atomic orbital electron populations 1.21851 0.94134 1.00874 1.02291 1.19405 0.95496 0.95841 0.91480 1.21873 1.01151 0.93266 1.02682 1.21856 1.00609 0.99161 0.97599 1.19767 1.02245 0.93559 0.98399 1.21074 0.96522 1.00292 0.93011 1.20873 1.07243 0.92408 1.01245 1.17819 0.94348 0.91667 0.87557 1.19747 1.02999 0.96278 0.95782 1.20721 0.98798 0.94144 0.95893 1.17779 0.94066 0.89540 0.94604 0.96092 1.22152 1.44869 1.00460 0.94706 0.96547 1.27202 0.97445 0.94360 1.03006 1.70997 1.38449 1.36862 1.11406 0.83618 0.75768 0.75313 0.74987 1.21675 1.15904 1.19619 1.22244 0.99604 0.99344 0.96294 1.21606 0.98857 0.83608 0.95759 1.44506 1.43550 1.22742 1.27337 0.92251 0.90867 0.94941 0.92152 0.91207 0.91477 0.95568 0.90702 0.93315 0.83314 0.83954 0.89359 0.94275 0.91450 0.94502 0.92562 0.87874 0.75395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 8.29 71.98 0.60 -3.11 16 2 C -0.02 -0.64 0.85 -52.93 -0.05 -0.68 16 3 C -0.13 -2.78 7.13 71.98 0.51 -2.26 16 4 C -0.13 -4.12 8.29 71.98 0.60 -3.52 16 5 C -0.14 -4.83 4.76 -19.87 -0.09 -4.93 16 6 C -0.09 -2.74 8.97 22.24 0.20 -2.54 16 7 C -0.20 -6.04 9.88 22.42 0.22 -5.82 16 8 C 0.19 6.98 6.47 38.14 0.25 7.23 16 9 C -0.14 -6.48 5.46 -19.75 -0.11 -6.59 16 10 C -0.08 -3.38 7.42 22.31 0.17 -3.21 16 11 C 0.06 2.89 1.84 -12.37 -0.02 2.86 16 12 H 0.02 1.05 6.74 -2.39 -0.02 1.03 16 13 C -0.58 -34.27 7.90 25.60 0.20 -34.06 16 14 H 0.02 1.07 7.04 -2.91 -0.02 1.05 16 15 C -0.02 -1.37 5.33 84.66 0.45 -0.91 16 16 N -0.94 -60.43 13.69 21.45 0.29 -60.13 16 17 Si 1.08 50.52 26.49 68.60 1.82 52.34 16 18 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 19 H -0.23 -9.41 5.50 99.48 0.55 -8.86 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C -0.14 -5.81 5.05 30.69 0.15 -5.65 16 22 C 0.13 3.99 7.11 86.44 0.61 4.61 16 23 N -0.75 -23.15 5.80 -337.66 -1.96 -25.11 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.03 1.05 7.38 -2.39 -0.02 1.03 16 27 H 0.06 1.22 7.51 -2.39 -0.02 1.20 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.27 7.51 -2.39 -0.02 1.25 16 30 H 0.03 0.95 7.38 -2.39 -0.02 0.93 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.15 3.42 5.89 -2.91 -0.02 3.40 16 34 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.09 4.41 6.04 -2.91 -0.02 4.39 16 36 H 0.25 16.34 8.73 -92.71 -0.81 15.53 16 37 H 0.07 2.84 4.93 -2.38 -0.01 2.83 16 38 H 0.04 1.71 8.12 -2.38 -0.02 1.69 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 41 H 0.41 9.66 8.86 -92.71 -0.82 8.84 16 Total: -1.00 -70.13 311.63 3.84 -66.29 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.00 Total: 25.20 kcal Atomic # 6 Polarization: -62.28 SS G_CDS: 3.69 Total: -58.59 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -1.66 Total: -85.24 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 1.82 Total: 52.34 kcal Total: -70.13 3.84 -66.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084018760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.714 kcal (2) G-P(sol) polarization free energy of solvation -70.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds