Wall clock time and date at job start Mon Mar 30 2020 06:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50690 * 109.47250 * 2 1 4 4 C 1.38123 * 120.04032 * 265.78224 * 3 2 1 5 5 C 1.38265 * 120.07378 * 180.02562 * 4 3 2 6 6 C 1.38307 * 120.15175 * 359.97438 * 5 4 3 7 7 C 1.38079 * 120.07418 * 359.74348 * 6 5 4 8 8 C 1.50701 * 120.03910 * 180.27118 * 7 6 5 9 9 C 1.38898 * 120.03527 * 85.80533 * 3 2 1 10 10 N 1.39667 * 120.07189 * 359.95262 * 9 3 2 11 11 C 1.47849 * 110.99745 * 126.45856 * 10 9 3 12 12 C 1.54904 * 104.79694 * 146.36001 * 11 10 9 13 13 C 1.55137 * 101.65416 * 322.93221 * 12 11 10 14 14 H 1.09003 * 110.85819 * 277.19535 * 13 12 11 15 15 C 1.50705 * 110.70745 * 154.03589 * 13 12 11 16 16 H 1.08002 * 119.99746 * 246.40255 * 15 13 12 17 17 C 1.37874 * 120.00353 * 66.12409 * 15 13 12 18 18 N 1.31517 * 119.99479 * 0.27653 * 17 15 13 19 19 Si 1.86795 * 120.00338 * 180.27853 * 17 15 13 20 20 H 1.48507 * 109.47089 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47163 * 119.99961 * 19 17 15 22 22 H 1.48504 * 109.47043 * 240.00052 * 19 17 15 23 23 C 1.47446 * 111.00258 * 247.29910 * 10 9 3 24 24 H 1.08999 * 109.46989 * 295.00979 * 1 2 3 25 25 H 1.08993 * 109.47392 * 55.00960 * 1 2 3 26 26 H 1.09001 * 109.47151 * 175.01483 * 1 2 3 27 27 H 1.09008 * 109.46833 * 240.00151 * 2 1 3 28 28 H 1.09004 * 109.47292 * 120.00786 * 2 1 3 29 29 H 1.08001 * 119.96538 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.92471 * 179.97438 * 5 4 3 31 31 H 1.08005 * 119.96294 * 179.97438 * 6 5 4 32 32 H 1.08993 * 109.47510 * 272.52356 * 8 7 6 33 33 H 1.09002 * 109.46805 * 32.52835 * 8 7 6 34 34 H 1.08999 * 109.47252 * 152.51905 * 8 7 6 35 35 H 1.08998 * 110.37588 * 265.19447 * 11 10 9 36 36 H 1.09004 * 110.37084 * 27.53529 * 11 10 9 37 37 H 1.09000 * 110.99372 * 204.84032 * 12 11 10 38 38 H 1.09004 * 110.98834 * 81.01952 * 12 11 10 39 39 H 0.97003 * 120.00051 * 180.02562 * 18 17 15 40 40 H 1.08989 * 109.89001 * 117.33533 * 23 10 9 41 41 H 1.09004 * 110.02148 * 356.22307 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3457 2.0433 -1.1925 5 6 2.8072 3.3467 -1.1932 6 6 2.9561 4.0316 -0.0009 7 6 2.6391 3.4172 1.1943 8 6 2.7959 4.1663 2.4925 9 6 2.1811 2.1055 1.1992 10 7 1.8647 1.4791 2.4068 11 6 2.9974 1.5520 3.3542 12 6 2.3379 1.6666 4.7512 13 6 1.1103 2.5645 4.4455 14 1 1.3915 3.6176 4.4402 15 6 0.0065 2.3148 5.4407 16 1 -0.9224 1.8694 5.1163 17 6 0.1845 2.6496 6.7662 18 7 1.3157 3.1920 7.1612 19 14 -1.1808 2.3330 8.0011 20 1 -2.3425 1.7200 7.3083 21 1 -0.6898 1.4105 9.0562 22 1 -1.5957 3.6174 8.6205 23 6 0.6867 2.1057 3.0343 24 1 -0.3633 0.4345 0.9313 25 1 -0.3634 0.5893 -0.8418 26 1 -0.3633 -1.0238 -0.0893 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5140 0.8899 29 1 2.2302 1.5115 -2.1253 30 1 3.0519 3.8310 -2.1270 31 1 3.3172 5.0495 -0.0050 32 1 3.8132 4.0419 2.8633 33 1 2.5962 5.2251 2.3274 34 1 2.0914 3.7739 3.2258 35 1 3.6021 0.6472 3.2931 36 1 3.6074 2.4317 3.1493 37 1 3.0086 2.1506 5.4611 38 1 2.0249 0.6885 5.1166 39 1 1.4412 3.4272 8.0938 40 1 -0.1239 1.3808 3.1077 41 1 0.3635 2.9649 2.4466 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084506671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:29 Heat of formation + Delta-G solvation = 35.664335 kcal Electronic energy + Delta-G solvation = -20136.114311 eV Core-core repulsion = 17401.869256 eV Total energy + Delta-G solvation = -2734.245055 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38322 -37.39030 -34.19644 -33.26089 -31.34651 -30.40567 -28.35458 -28.03814 -26.33307 -24.36756 -23.40515 -21.60187 -20.07750 -20.03404 -19.44693 -16.87701 -16.34375 -15.46728 -15.11483 -14.57035 -14.21471 -13.87361 -13.73748 -13.30964 -13.03356 -12.82942 -12.63434 -11.99400 -11.84338 -11.82305 -11.57527 -11.49873 -11.21123 -11.06533 -10.92169 -10.69465 -10.65252 -10.49499 -10.46137 -10.15328 -9.61488 -9.43843 -8.80144 -8.42192 -8.26520 -8.09356 -7.69346 -6.07293 -4.09592 1.63377 1.67034 3.27503 3.36043 3.40041 3.98668 4.40154 4.60833 5.07015 5.11381 5.21531 5.26457 5.45235 5.55461 5.69181 5.72388 5.79089 5.83268 5.95044 6.00602 6.07609 6.11227 6.23209 6.25830 6.28105 6.28793 6.41627 6.52995 6.59264 6.70216 6.74495 6.79769 6.84838 6.95441 7.09092 7.18541 7.23706 7.50421 7.55778 7.82272 7.91383 8.10526 8.35701 8.91729 9.54575 11.02477 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.027618 B = 0.006001 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.573492 B = 4665.003231 C = 5185.309743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.064 4.064 4 C -0.127 4.127 5 C -0.129 4.129 6 C -0.124 4.124 7 C -0.106 4.106 8 C -0.161 4.161 9 C 0.101 3.899 10 N -0.495 5.495 11 C 0.022 3.978 12 C -0.104 4.104 13 C 0.029 3.971 14 H 0.047 0.953 15 C -0.510 4.510 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.052 3.948 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.260 0.740 40 H 0.072 0.928 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 -1.606 -13.164 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.065 4.065 4 C -0.146 4.146 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.108 4.108 8 C -0.216 4.216 9 C 0.007 3.993 10 N -0.216 5.216 11 C -0.104 4.104 12 C -0.143 4.143 13 C 0.011 3.989 14 H 0.064 0.936 15 C -0.549 4.549 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.072 4.072 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.077 -2.073 -13.093 13.609 hybrid contribution -0.383 0.822 0.785 1.200 sum 2.694 -1.252 -12.308 12.661 Atomic orbital electron populations 1.21680 0.95069 1.00906 1.02196 1.20335 0.95986 0.92411 1.02215 1.19785 0.98780 0.96418 0.91520 1.20869 1.01431 0.95180 0.97075 1.20982 1.01264 0.94986 0.97515 1.20893 1.01597 0.99674 0.92094 1.20644 0.99500 0.94776 0.95878 1.21815 1.04106 0.99566 0.96104 1.18919 0.98028 0.90429 0.91966 1.61228 1.05786 1.52720 1.01914 1.23580 0.92925 1.00227 0.93670 1.22655 0.98305 1.00703 0.92617 1.20043 0.93973 0.95156 0.89755 0.93587 1.21101 1.00240 1.41000 0.92542 0.92340 1.24963 0.95575 0.94871 0.98432 1.69956 1.24189 1.42240 1.16423 0.86547 0.82320 0.77880 0.81342 1.19727 1.21031 1.21090 1.23089 0.91481 0.96524 0.96156 0.91764 0.93579 0.93045 0.92511 0.89823 0.86553 0.86747 0.86776 0.91227 0.92420 0.86430 0.92162 0.92610 0.91019 0.92335 0.93035 0.91016 0.94453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 37.16 0.37 -1.54 16 2 C -0.07 -1.01 5.77 -27.89 -0.16 -1.17 16 3 C -0.06 -1.00 5.15 -104.42 -0.54 -1.54 16 4 C -0.13 -1.75 9.68 -39.61 -0.38 -2.14 16 5 C -0.13 -1.74 10.04 -39.55 -0.40 -2.14 16 6 C -0.12 -1.84 9.71 -39.61 -0.38 -2.22 16 7 C -0.11 -1.81 5.21 -104.42 -0.54 -2.35 16 8 C -0.16 -2.80 7.98 36.01 0.29 -2.51 16 9 C 0.10 1.79 4.57 -83.79 -0.38 1.41 16 10 N -0.50 -9.42 4.19 -167.92 -0.70 -10.12 16 11 C 0.02 0.42 6.03 -2.30 -0.01 0.41 16 12 C -0.10 -2.34 5.92 -24.60 -0.15 -2.49 16 13 C 0.03 0.70 2.07 -89.95 -0.19 0.51 16 14 H 0.05 1.18 5.99 -51.93 -0.31 0.87 16 15 C -0.51 -13.54 8.47 -34.44 -0.29 -13.83 16 16 H 0.06 1.55 7.53 -52.49 -0.40 1.15 16 17 C 0.06 1.71 5.36 -17.82 -0.10 1.61 16 18 N -0.89 -24.74 12.47 55.43 0.69 -24.05 16 19 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.05 1.10 5.46 -2.84 -0.02 1.08 16 24 H 0.06 1.00 8.02 -51.93 -0.42 0.58 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.68 8.06 -51.92 -0.42 0.26 16 28 H 0.08 1.28 7.60 -51.93 -0.39 0.89 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.07 1.17 6.85 -51.93 -0.36 0.81 16 33 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 34 H 0.12 2.35 1.57 -51.93 -0.08 2.27 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.05 4.10 -51.93 -0.21 0.83 16 37 H 0.07 1.71 7.75 -51.93 -0.40 1.31 16 38 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.07 1.55 7.58 -51.94 -0.39 1.16 16 41 H 0.04 0.78 6.92 -51.93 -0.36 0.42 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -27.12 313.82 -9.44 -36.55 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.25 Total: 3.91 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -2.88 Total: -26.91 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.01 Total: -34.16 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.12 -9.44 -36.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084506671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.218 kcal (2) G-P(sol) polarization free energy of solvation -27.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds