Wall clock time and date at job start Mon Mar 30 2020 07:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47238 * 2 1 4 4 C 1.50704 * 109.47296 * 119.99852 * 2 1 3 5 5 C 1.38279 * 119.92267 * 120.00031 * 4 2 1 6 6 C 1.38108 * 120.07054 * 180.02562 * 5 4 2 7 7 C 1.38910 * 119.92823 * 359.97438 * 6 5 4 8 8 N 1.39669 * 120.07731 * 179.97438 * 7 6 5 9 9 C 1.48561 * 111.00411 * 300.13199 * 8 7 6 10 10 C 1.54380 * 104.59536 * 200.95626 * 9 8 7 11 11 C 1.54260 * 105.05834 * 23.85274 * 10 9 8 12 12 H 1.09005 * 110.32119 * 240.99737 * 11 10 9 13 13 C 1.50706 * 110.32252 * 118.89766 * 11 10 9 14 14 H 1.08000 * 119.99302 * 241.45094 * 13 11 10 15 15 C 1.37871 * 120.00436 * 61.17627 * 13 11 10 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13 19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13 21 21 C 1.48563 * 111.00080 * 184.70932 * 8 7 6 22 22 C 1.38915 * 119.84724 * 0.25748 * 7 6 5 23 23 C 1.38107 * 119.92540 * 359.49470 * 22 7 6 24 24 H 1.08995 * 109.47078 * 300.00344 * 1 2 3 25 25 H 1.08996 * 109.46831 * 59.99888 * 1 2 3 26 26 H 1.08996 * 109.47066 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47206 * 240.00339 * 2 1 3 28 28 H 1.08998 * 109.46719 * 300.00304 * 3 2 1 29 29 H 1.09002 * 109.47083 * 59.99633 * 3 2 1 30 30 H 1.08993 * 109.47265 * 179.97438 * 3 2 1 31 31 H 1.07993 * 119.96974 * 0.04255 * 5 4 2 32 32 H 1.08004 * 120.03788 * 180.02562 * 6 5 4 33 33 H 1.09003 * 110.41086 * 82.17805 * 9 8 7 34 34 H 1.08998 * 110.41089 * 319.73909 * 9 8 7 35 35 H 1.08991 * 110.32487 * 264.95377 * 10 9 8 36 36 H 1.08996 * 110.40877 * 142.79139 * 10 9 8 37 37 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 38 38 H 1.09001 * 110.40901 * 40.26604 * 21 8 7 39 39 H 1.08996 * 110.40950 * 277.82053 * 21 8 7 40 40 H 1.07999 * 120.03523 * 179.72259 * 22 7 6 41 41 H 1.08000 * 119.96308 * 180.25061 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8273 -1.8345 1.1018 6 6 3.2889 -2.4882 2.2274 7 6 2.9544 -2.0150 3.4898 8 7 3.4191 -2.6739 4.6302 9 6 2.9443 -4.0813 4.6626 10 6 3.0515 -4.4939 6.1464 11 6 2.9909 -3.1701 6.9359 12 1 3.9072 -3.0289 7.5092 13 6 1.7946 -3.1616 7.8525 14 1 1.0240 -2.4154 7.7274 15 6 1.6812 -4.1099 8.8469 16 7 2.6168 -5.0222 8.9953 17 14 0.1980 -4.0998 9.9824 18 1 -0.8773 -4.9420 9.3997 19 1 0.5869 -4.6414 11.3093 20 1 -0.2945 -2.7079 10.1410 21 6 2.8521 -2.0689 5.8629 22 6 2.1516 -0.8882 3.6154 23 6 1.6976 -0.2363 2.4857 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 3.0877 -2.2016 0.1201 32 1 3.9101 -3.3659 2.1262 33 1 3.5835 -4.7125 4.0453 34 1 1.9096 -4.1412 4.3252 35 1 3.9982 -5.0016 6.3306 36 1 2.2171 -5.1383 6.4230 37 1 2.5369 -5.6896 9.6946 38 1 1.8029 -1.8140 5.7133 39 1 3.4220 -1.1851 6.1493 40 1 1.8859 -0.5203 4.5954 41 1 1.0768 0.6421 2.5826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084506678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:25 Heat of formation + Delta-G solvation = 15.358292 kcal Electronic energy + Delta-G solvation = -19140.912064 eV Core-core repulsion = 16405.786473 eV Total energy + Delta-G solvation = -2735.125591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.91844 -37.86659 -35.06855 -33.00815 -30.91888 -30.64440 -28.29736 -27.40859 -27.21745 -24.62475 -22.85539 -22.29134 -20.77236 -19.50474 -19.18801 -17.12712 -15.99396 -15.52514 -15.02261 -14.74447 -14.59858 -14.05298 -13.96571 -13.56480 -13.13203 -13.08464 -12.70635 -12.52444 -12.29444 -12.12801 -11.57245 -11.49332 -11.15012 -11.08740 -11.01717 -10.81970 -10.68570 -10.56740 -10.47013 -10.27105 -9.83297 -9.38294 -9.01158 -8.79888 -8.64692 -8.42306 -7.35518 -6.06079 -4.10570 1.66602 1.69008 3.27686 3.34896 3.37694 3.97572 4.38109 4.62137 4.73105 4.81588 5.15194 5.20482 5.25175 5.27418 5.42733 5.52301 5.61875 5.64949 5.71205 5.74149 5.84773 5.89839 5.93295 6.07617 6.15009 6.15756 6.16794 6.26168 6.34196 6.43714 6.60961 6.64147 6.79132 6.88118 7.05592 7.11743 7.16449 7.47185 7.62148 7.77286 7.89465 7.94582 8.38818 8.91880 9.53950 11.03058 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032483 B = 0.004346 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.773715 B = 6441.506564 C = 6901.037929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.143 4.143 4 C -0.118 4.118 5 C -0.098 4.098 6 C -0.142 4.142 7 C 0.115 3.885 8 N -0.475 5.475 9 C 0.041 3.959 10 C -0.093 4.093 11 C 0.048 3.952 12 H 0.035 0.965 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.036 3.964 22 C -0.169 4.169 23 C -0.090 4.090 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.261 0.739 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.130 0.870 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 7.558 -16.042 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.200 4.200 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.163 4.163 7 C 0.016 3.984 8 N -0.190 5.190 9 C -0.084 4.084 10 C -0.132 4.132 11 C 0.029 3.971 12 H 0.054 0.946 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.524 5.524 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.090 4.090 22 C -0.189 4.189 23 C -0.109 4.109 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.148 0.852 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.984 7.378 -15.865 17.525 hybrid contribution -1.466 -0.116 0.696 1.627 sum -2.451 7.263 -15.169 16.996 Atomic orbital electron populations 1.21858 0.94781 1.01909 1.01552 1.20018 0.95590 0.95747 0.95520 1.21857 1.01189 0.95457 1.01543 1.19634 1.00826 0.97103 0.94300 1.20810 0.97740 0.95242 0.97826 1.20766 1.02831 1.01610 0.91045 1.19353 0.92369 0.94887 0.91795 1.62433 1.51327 1.04031 1.01194 1.23253 0.97462 0.87018 1.00647 1.22256 1.01288 1.00103 0.89557 1.19403 0.97792 0.88661 0.91293 0.94640 1.21165 1.05857 1.14031 1.14558 0.92609 1.24959 0.96203 0.95468 0.97239 1.69984 1.33122 1.16387 1.32926 0.86619 0.83001 0.78294 0.80264 1.20697 1.21187 1.19888 1.23526 0.97171 0.99259 0.89072 1.21455 0.99401 0.98676 0.99409 1.20756 0.99315 0.99083 0.91720 0.92507 0.92828 0.92608 0.90978 0.92828 0.92528 0.92625 0.86632 0.86217 0.91567 0.94064 0.93306 0.90986 0.92947 0.93007 0.91628 0.85226 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.01 37.16 0.33 -1.02 16 2 C -0.05 -0.51 3.09 -91.77 -0.28 -0.80 16 3 C -0.14 -1.32 9.01 37.16 0.33 -0.98 16 4 C -0.12 -1.53 4.79 -104.59 -0.50 -2.03 16 5 C -0.10 -1.32 9.66 -39.61 -0.38 -1.70 16 6 C -0.14 -2.22 9.37 -39.38 -0.37 -2.59 16 7 C 0.12 2.04 5.48 -83.79 -0.46 1.58 16 8 N -0.48 -9.41 5.43 -166.71 -0.91 -10.32 16 9 C 0.04 0.81 5.92 -2.18 -0.01 0.80 16 10 C -0.09 -2.18 5.74 -25.35 -0.15 -2.32 16 11 C 0.05 1.18 3.00 -90.39 -0.27 0.91 16 12 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 13 C -0.52 -13.93 8.38 -34.44 -0.29 -14.22 16 14 H 0.06 1.48 7.58 -52.49 -0.40 1.08 16 15 C 0.06 1.73 5.09 -17.82 -0.09 1.64 16 16 N -0.89 -25.05 12.32 55.43 0.68 -24.37 16 17 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.04 0.76 4.78 -2.18 -0.01 0.75 16 22 C -0.17 -2.79 8.82 -39.38 -0.35 -3.14 16 23 C -0.09 -1.27 8.70 -39.61 -0.34 -1.61 16 24 H 0.06 0.54 7.38 -51.93 -0.38 0.16 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.53 7.38 -51.93 -0.38 0.14 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.12 1.28 7.94 -52.49 -0.42 0.86 16 32 H 0.12 1.76 7.90 -52.48 -0.41 1.35 16 33 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 34 H 0.04 0.81 7.97 -51.93 -0.41 0.40 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.82 7.21 -51.93 -0.37 1.45 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.05 1.10 5.86 -51.93 -0.30 0.79 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.13 2.16 5.79 -52.49 -0.30 1.85 16 41 H 0.12 1.39 7.09 -52.49 -0.37 1.02 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -27.90 322.75 -9.90 -37.81 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.68 Total: 0.81 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -2.84 Total: -24.73 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.22 Total: -34.69 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.90 -9.90 -37.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084506678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.164 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds