Wall clock time and date at job start Mon Mar 30 2020 07:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47238 * 2 1 4 4 C 1.50704 * 109.47296 * 119.99852 * 2 1 3 5 5 C 1.38279 * 119.92267 * 120.00031 * 4 2 1 6 6 C 1.38108 * 120.07054 * 180.02562 * 5 4 2 7 7 C 1.38910 * 119.92823 * 359.97438 * 6 5 4 8 8 N 1.39669 * 120.07731 * 179.97438 * 7 6 5 9 9 C 1.48561 * 111.00411 * 300.13199 * 8 7 6 10 10 C 1.54380 * 104.59536 * 200.95626 * 9 8 7 11 11 C 1.54260 * 105.05834 * 23.85274 * 10 9 8 12 12 H 1.09005 * 110.32119 * 240.99737 * 11 10 9 13 13 C 1.50706 * 110.32252 * 118.89766 * 11 10 9 14 14 H 1.08000 * 119.99302 * 241.45094 * 13 11 10 15 15 C 1.37871 * 120.00436 * 61.17627 * 13 11 10 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13 19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13 21 21 C 1.48563 * 111.00080 * 184.70932 * 8 7 6 22 22 C 1.38915 * 119.84724 * 0.25748 * 7 6 5 23 23 C 1.38107 * 119.92540 * 359.49470 * 22 7 6 24 24 H 1.08995 * 109.47078 * 300.00344 * 1 2 3 25 25 H 1.08996 * 109.46831 * 59.99888 * 1 2 3 26 26 H 1.08996 * 109.47066 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47206 * 240.00339 * 2 1 3 28 28 H 1.08998 * 109.46719 * 300.00304 * 3 2 1 29 29 H 1.09002 * 109.47083 * 59.99633 * 3 2 1 30 30 H 1.08993 * 109.47265 * 179.97438 * 3 2 1 31 31 H 1.07993 * 119.96974 * 0.04255 * 5 4 2 32 32 H 1.08004 * 120.03788 * 180.02562 * 6 5 4 33 33 H 1.09003 * 110.41086 * 82.17805 * 9 8 7 34 34 H 1.08998 * 110.41089 * 319.73909 * 9 8 7 35 35 H 1.08991 * 110.32487 * 264.95377 * 10 9 8 36 36 H 1.08996 * 110.40877 * 142.79139 * 10 9 8 37 37 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 38 38 H 1.09001 * 110.40901 * 40.26604 * 21 8 7 39 39 H 1.08996 * 110.40950 * 277.82053 * 21 8 7 40 40 H 1.07999 * 120.03523 * 179.72259 * 22 7 6 41 41 H 1.08000 * 119.96308 * 180.25061 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8273 -1.8345 1.1018 6 6 3.2889 -2.4882 2.2274 7 6 2.9544 -2.0150 3.4898 8 7 3.4191 -2.6739 4.6302 9 6 2.9443 -4.0813 4.6626 10 6 3.0515 -4.4939 6.1464 11 6 2.9909 -3.1701 6.9359 12 1 3.9072 -3.0289 7.5092 13 6 1.7946 -3.1616 7.8525 14 1 1.0240 -2.4154 7.7274 15 6 1.6812 -4.1099 8.8469 16 7 2.6168 -5.0222 8.9953 17 14 0.1980 -4.0998 9.9824 18 1 -0.8773 -4.9420 9.3997 19 1 0.5869 -4.6414 11.3093 20 1 -0.2945 -2.7079 10.1410 21 6 2.8521 -2.0689 5.8629 22 6 2.1516 -0.8882 3.6154 23 6 1.6976 -0.2363 2.4857 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 3.0877 -2.2016 0.1201 32 1 3.9101 -3.3659 2.1262 33 1 3.5835 -4.7125 4.0453 34 1 1.9096 -4.1412 4.3252 35 1 3.9982 -5.0016 6.3306 36 1 2.2171 -5.1383 6.4230 37 1 2.5369 -5.6896 9.6946 38 1 1.8029 -1.8140 5.7133 39 1 3.4220 -1.1851 6.1493 40 1 1.8859 -0.5203 4.5954 41 1 1.0768 0.6421 2.5826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084506678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:25 Heat of formation + Delta-G solvation = 1.555080 kcal Electronic energy + Delta-G solvation = -19141.510616 eV Core-core repulsion = 16405.786473 eV Total energy + Delta-G solvation = -2735.724143 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.24394 -39.21945 -36.28376 -34.77800 -32.37449 -32.04036 -30.00734 -28.76734 -27.91725 -26.51706 -24.04790 -23.70775 -22.11403 -20.98885 -20.60577 -18.74830 -17.75052 -16.81216 -16.53528 -16.31751 -16.09521 -15.29683 -15.04612 -14.63001 -14.38424 -14.30216 -14.20664 -13.84096 -13.64242 -13.13411 -13.08129 -12.92174 -12.80956 -12.59270 -12.49558 -12.21859 -12.01038 -11.93002 -11.78020 -11.57067 -11.46286 -11.25212 -10.82503 -10.51565 -10.39244 -9.80775 -8.70225 -8.15746 -6.27165 0.47814 0.53371 1.40623 1.41462 1.51646 2.40771 2.77425 3.15416 3.18313 3.83206 3.89811 3.99630 4.12144 4.14308 4.31677 4.36104 4.40044 4.49661 4.55006 4.61426 4.68163 4.71320 4.86359 4.92254 4.95808 5.01929 5.05141 5.07183 5.16773 5.19712 5.22893 5.36500 5.43612 5.45031 5.52776 5.57306 5.76228 5.81076 5.83536 5.95274 6.01344 6.34737 6.47683 6.82235 7.40848 8.93332 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032483 B = 0.004346 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.773715 B = 6441.506564 C = 6901.037929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C -0.142 4.142 4 C -0.108 4.108 5 C -0.097 4.097 6 C -0.146 4.146 7 C 0.081 3.919 8 N -0.479 5.479 9 C 0.053 3.947 10 C -0.085 4.085 11 C 0.039 3.961 12 H 0.002 0.998 13 C -0.534 4.534 14 H 0.055 0.945 15 C 0.015 3.985 16 N -0.916 5.916 17 Si 0.955 3.045 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.267 1.267 21 C 0.051 3.949 22 C -0.183 4.183 23 C -0.092 4.092 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.146 0.854 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.262 0.738 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.120 0.880 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 8.595 -18.444 20.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 C -0.200 4.200 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.166 4.166 7 C -0.017 4.017 8 N -0.195 5.195 9 C -0.072 4.072 10 C -0.124 4.124 11 C 0.020 3.980 12 H 0.020 0.980 13 C -0.573 4.573 14 H 0.073 0.927 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.781 3.219 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.076 4.076 22 C -0.203 4.203 23 C -0.111 4.111 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.164 0.836 32 H 0.144 0.856 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.138 0.862 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.074 8.435 -18.292 20.249 hybrid contribution -1.127 -0.376 1.338 1.790 sum -3.201 8.059 -16.953 19.042 Atomic orbital electron populations 1.21855 0.94086 1.01754 1.02352 1.20104 0.96089 0.96145 0.94440 1.21851 1.00914 0.94830 1.02357 1.20057 0.99213 0.96503 0.95067 1.21170 0.96945 0.94936 0.98463 1.20937 1.02835 1.02011 0.90789 1.19468 0.94593 0.95929 0.91663 1.62476 1.51892 1.03701 1.01398 1.23109 0.98061 0.87919 0.98104 1.22021 0.99415 0.98794 0.92129 1.19366 0.95601 0.90962 0.92088 0.98027 1.21474 1.06432 1.14067 1.15289 0.92696 1.25737 0.98901 0.95067 0.98710 1.70105 1.34853 1.16968 1.33553 0.85594 0.79619 0.78527 0.78180 1.20058 1.20866 1.19187 1.23240 0.97262 0.98057 0.89017 1.21495 0.99990 0.98850 0.99973 1.20975 0.99180 0.99468 0.91471 0.92921 0.90920 0.93248 0.89495 0.90951 0.92884 0.93070 0.83641 0.85552 0.89215 0.94145 0.94530 0.93545 0.92912 0.93201 0.91365 0.86244 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.01 71.98 0.65 -1.57 16 2 C -0.05 -0.83 3.09 -11.54 -0.04 -0.86 16 3 C -0.14 -2.13 9.01 71.98 0.65 -1.48 16 4 C -0.11 -2.49 4.79 -19.84 -0.09 -2.58 16 5 C -0.10 -2.32 9.66 22.25 0.21 -2.11 16 6 C -0.15 -4.29 9.37 22.40 0.21 -4.08 16 7 C 0.08 2.83 5.48 38.22 0.21 3.04 16 8 N -0.48 -19.11 5.43 -681.34 -3.70 -22.82 16 9 C 0.05 2.11 5.92 86.45 0.51 2.62 16 10 C -0.08 -4.11 5.74 31.49 0.18 -3.93 16 11 C 0.04 2.02 3.00 -10.64 -0.03 1.98 16 12 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 13 C -0.53 -29.58 8.38 25.60 0.21 -29.37 16 14 H 0.05 2.97 7.58 -2.91 -0.02 2.95 16 15 C 0.02 0.85 5.09 84.65 0.43 1.28 16 16 N -0.92 -53.27 12.32 21.45 0.26 -53.01 16 17 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.05 2.22 4.78 86.45 0.41 2.63 16 22 C -0.18 -5.93 8.82 22.40 0.20 -5.74 16 23 C -0.09 -2.43 8.70 22.25 0.19 -2.24 16 24 H 0.05 0.86 7.38 -2.39 -0.02 0.84 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 1.24 7.87 -2.39 -0.02 1.22 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.83 7.38 -2.39 -0.02 0.81 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.15 2.61 7.94 -2.91 -0.02 2.59 16 32 H 0.13 3.48 7.90 -2.91 -0.02 3.46 16 33 H 0.09 3.12 8.03 -2.39 -0.02 3.10 16 34 H 0.04 1.60 7.97 -2.39 -0.02 1.58 16 35 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 2.44 7.21 -2.39 -0.02 2.42 16 37 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 38 H 0.05 2.17 5.86 -2.39 -0.01 2.16 16 39 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.12 4.03 5.79 -2.91 -0.02 4.01 16 41 H 0.13 2.95 7.09 -2.91 -0.02 2.92 16 Total: -1.00 -60.98 322.75 3.48 -57.50 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.98 Total: 15.21 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 3.91 Total: -42.39 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -3.44 Total: -75.82 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -60.98 3.48 -57.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084506678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.050 kcal (2) G-P(sol) polarization free energy of solvation -60.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds